pycom12g13510

dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0013835
Physical Location & Seq
Forward (+)
15991066 .. 15992287
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1035 bp
ATGGTTTTCTCTTCCATTCCAGCTTATCTTGATCCGGCCAATTGGCAGCAGCAACCAAATCATCACCACCACTTAACAGGAAGCAACACCAATAACATTAGCAACAACAACATCAACAACAACAACTCTCACTTCCTTCCGCCTCCTCCTCCGCCGCTGCCTTCAAACCCTCATGACGGCTGTGGGGTAGGTGGTGCGGGCTCGATCAGGCCAGGCTCTATGGCAGATCGAGCTCGCATGGCCAACATCCCCCTCCCAGAGCAAGCACTAAAATGTCCGCGGTGCGAATCCACAAACACTAAGTTCTGCTACTTCAACAACTACAGCCTCACACAGCCCCGCCACTTCTGCAAGACTTGTAGAAGGTACTGGACGCGAGGCGGGGCCCTGCGTAATGTTCCAGTTGGCGGCGGCTGCAGGAGAAACAAAAGGAGCAAAGGAACCAGTAGCAGCGCCTCCAAGTCCCCAGCCAGCAGCTCGGACCGGCCAACCTGTTCGGCCGGTTCGTCGGGCCACTCAAATTTAGGGTTAAACAACAGTAGCACGGCCGGCTCGGCGGATAATAATAACATGAGGATGAGCCCGCAAATCCCACCTCTGCGTTTCATGTCGCCTTTCGCCACCGACATGGCCTTAAATTTCGGCATGATGAACAATAATAATAGCAGTAATTATGGAGTTGGAGACTTGAATGGTTTTCATCAGATGGGGAGTGGTCTAGGAGCTAGCGGTGGATCGCTCTTTAATTTCCAGCAGCAGACGCCGTCATTTCCGTTCATGGCCGGGTTGGATCCTACGCCGGCGGGGCTTATGTTCGAGACCAGCGGAGTTGAGGTACCGGGGTATAATCAGGTGCGGCCGAGAGCACCGTCTGCTGGGATGAGTATATCTCAAATGGCTTCGGTGAAGATGGAATTAGAAAGTCAGCAACAACAACAACAACAGCAACAGAATCAGGAGTTGAACTTGTCGAGGCAGTTGTTGGGGATGAATAATAATTCAGGAAATGATCCATCGCTTTTAGTTCTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

345

Amino Acids

37.03

Weight (kDa)

9.24

Isoelectric Point (pI)

57.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 88 - 144 8.8e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02460
fragaria_vesca FvH4_6g14000
malus_domestica MD04G1126500.v1.1 MD12G1078400.v1.1
prunus_persica Prupe.6G253300_v2.0.a1
pyrus_communis pycom04g11350 pycom12g13510
rosa_chinensis RchiOBHm_Chr3g0466831
rosa_laevigata RLG00000024548
rosa_multiflora Rmu_sc0017982.1_g000002
rosa_roxburghii Rroxscaffold_6G00414100
rosa_rugosa Rorug03G0083900
rosa_samantha Rh3AG131600 Rh3BG152700 Rh3CG152900 Rh3DG153800
rosa_wichuraiana Rw3G012440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 835
AccB1I GGYRCC 1 cut(s) 835
AccII CGCG 2 cut(s) 280, 376
AclWI GGATC 5 cut(s) 26, 742, 785, 798, 1004
AcoI YGGCCR 7 cut(s) 36, 240, 485, 498, 546, 780, 857
AcsI RAATTY 2 cut(s) 520, 637
AcyI GRCGYC 1 cut(s) 761
AfaI GTAC 2 cut(s) 368, 837
AfiI CCNNNNNNNGG 3 cut(s) 176, 407, 875
AgsI TTSAA 4 cut(s) 165, 316, 691, 964
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 4 cut(s) 23, 233, 477, 725
AluI AGCT 4 cut(s) 23, 233, 477, 725
Alw21I GWGCWC 2 cut(s) 235, 868
Alw26I GTCTC 2 cut(s) 678, 812
AlwI GGATC 5 cut(s) 26, 742, 785, 798, 1004
ApaI GGGCCC 1 cut(s) 388
ApeKI GCWGC 7 cut(s) 46, 49, 157, 414, 450, 474, 754
ApoI RAATTY 2 cut(s) 520, 637
Asp718I GGTACC 1 cut(s) 835
AspLEI GCGC 1 cut(s) 455
AspS9I GGNCC 4 cut(s) 384, 385, 481, 511
AsuC2I CCSGG 2 cut(s) 784, 840
AsuHPI GGTGA 2 cut(s) 56, 916
AsuNHI GCTAGC 1 cut(s) 725
AvaII GGWCC 1 cut(s) 481
BaeGI GKGCMC 1 cut(s) 388
BaeI ACNNNNGTAYC 2 cut(s) 827, 860
BalI TGGCCA 1 cut(s) 242
BamHI GGATCC 1 cut(s) 790
BanI GGYRCC 1 cut(s) 835
BanII GRGCYC 4 cut(s) 203, 235, 388, 584
Bbv12I GWGCWC 2 cut(s) 235, 868
BbvI GCAGC 7 cut(s) 58, 61, 144, 401, 462, 486, 766
BccI CCATC 3 cut(s) 700, 904, 1021
BceAI ACGGC 3 cut(s) 193, 561, 748
BciT130I CCWGG 1 cut(s) 213
BcnI CCSGG 2 cut(s) 784, 840
BcoDI GTCTC 2 cut(s) 678, 812
BfaI CTAG 2 cut(s) 719, 726
BfmI CTRYAG 2 cut(s) 322, 415
BfoI RGCGCY 1 cut(s) 456
BglI GCCNNNNNGGC 2 cut(s) 554, 805
Bme1390I CCNGG 3 cut(s) 213, 784, 840
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 4 cut(s) 384, 385, 481, 511
BmiI GGNNCC 5 cut(s) 385, 386, 442, 792, 837
BmrFI CCNGG 3 cut(s) 213, 784, 840
BmtI GCTAGC 1 cut(s) 729
BplI GAGNNNNNCTC 2 cut(s) 874, 906
BpuMI CCSGG 2 cut(s) 784, 840
BsaHI GRCGYC 1 cut(s) 761
BsaI GGTCTC 1 cut(s) 812
BsaJI CCNNGG 2 cut(s) 278, 839
BsaXI ACNNNNNCTCC 2 cut(s) 819, 849
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 407, 875
Bse118I RCCGGY 4 cut(s) 483, 500, 548, 799
Bse1I ACTGG 3 cut(s) 374, 401, 444
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 278, 839
BseGI GGATG 4 cut(s) 246, 582, 885, 993
BseLI CCNNNNNNNGG 3 cut(s) 176, 407, 875
BseNI ACTGG 3 cut(s) 374, 401, 444
BseRI GAGGAG 2 cut(s) 135, 138
BseSI GKGCMC 1 cut(s) 388
BseX3I CGGCCG 3 cut(s) 498, 546, 857
BseXI GCAGC 7 cut(s) 58, 61, 144, 401, 462, 486, 766
BseYI CCCAGC 2 cut(s) 466, 875
Bsh1236I CGCG 2 cut(s) 280, 376
Bsh1285I CGRYCG 3 cut(s) 501, 549, 860
BshNI GGYRCC 1 cut(s) 835
BsiEI CGRYCG 3 cut(s) 501, 549, 860
BsiHKAI GWGCWC 2 cut(s) 235, 868
BsiSI CCGG 7 cut(s) 35, 484, 501, 549, 783, 800, 839
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 3 cut(s) 176, 407, 875
BsmAI GTCTC 2 cut(s) 678, 812
BsmFI GGGAC 1 cut(s) 448
Bso31I GGTCTC 1 cut(s) 812
Bsp120I GGGCCC 1 cut(s) 384
Bsp1286I GDGCHC 5 cut(s) 203, 235, 388, 584, 868
Bsp143I GATC 6 cut(s) 31, 204, 226, 734, 790, 1009
BspFNI CGCG 2 cut(s) 280, 376
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 5 cut(s) 385, 386, 442, 792, 837
BspMAI CTGCAG 1 cut(s) 419
BspOI GCTAGC 1 cut(s) 729
BspPI GGATC 5 cut(s) 26, 742, 785, 798, 1004
BspT107I GGYRCC 1 cut(s) 835
BspTNI GGTCTC 1 cut(s) 812
BsrFI RCCGGY 4 cut(s) 483, 500, 548, 799
BsrI ACTGG 3 cut(s) 374, 401, 444
BssAI RCCGGY 4 cut(s) 483, 500, 548, 799
BssECI CCNNGG 2 cut(s) 278, 839
BssMI GATC 6 cut(s) 31, 204, 226, 734, 790, 1009
BssNI GRCGYC 1 cut(s) 761
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 2 cut(s) 539, 870
Bst6I CTCTTC 1 cut(s) 16
BstACI GRCGYC 1 cut(s) 761
BstAPI GCANNNNNTGC 1 cut(s) 872
BstC8I GCNNGC 8 cut(s) 199, 235, 264, 472, 550, 584, 727, 801
BstDEI CTNAG 1 cut(s) 300
BstDSI CCRYGG 1 cut(s) 278
BstF5I GGATG 4 cut(s) 246, 582, 885, 993
BstFNI CGCG 2 cut(s) 280, 376
BstH2I RGCGCY 1 cut(s) 456
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 6 cut(s) 34, 207, 229, 737, 793, 1012
BstMAI GTCTC 2 cut(s) 678, 812
BstMBI GATC 6 cut(s) 31, 204, 226, 734, 790, 1009
BstMCI CGRYCG 3 cut(s) 501, 549, 860
BstMWI GCNNNNNNNGC 9 cut(s) 230, 239, 348, 414, 549, 554, 760, 805, 872
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 3 cut(s) 211, 782, 838
BstSFI CTRYAG 2 cut(s) 322, 415
BstSLI GKGCMC 1 cut(s) 388
BstUI CGCG 2 cut(s) 280, 376
BstV1I GCAGC 7 cut(s) 58, 61, 144, 401, 462, 486, 766
BstX2I RGATCY 1 cut(s) 790
BstXI CCANNNNNNTGG 1 cut(s) 628
BstYI RGATCY 1 cut(s) 790
BstZI CGGCCG 3 cut(s) 498, 546, 857
BtgI CCRYGG 1 cut(s) 278
BtgZI GCGATG 1 cut(s) 999
BtsCI GGATG 4 cut(s) 246, 582, 885, 993
Cac8I GCNNGC 8 cut(s) 199, 235, 264, 472, 550, 584, 727, 801
CciI TCATGA 1 cut(s) 172
CfoI GCGC 1 cut(s) 455
Cfr10I RCCGGY 4 cut(s) 483, 500, 548, 799
Cfr13I GGNCC 4 cut(s) 384, 385, 481, 511
Cfr42I CCGCGG 1 cut(s) 281
CpoI CGGWCCG 1 cut(s) 481
CseI GACGC 2 cut(s) 382, 769
Csp6I GTAC 2 cut(s) 367, 836
CspI CGGWCCG 1 cut(s) 481
CviAII CATG 7 cut(s) 173, 238, 571, 607, 628, 646, 778
CviQI GTAC 2 cut(s) 367, 836
DdeI CTNAG 1 cut(s) 300
DpnI GATC 6 cut(s) 33, 206, 228, 736, 792, 1011
DpnII GATC 6 cut(s) 31, 204, 226, 734, 790, 1009
EaeI YGGCCR 7 cut(s) 36, 240, 485, 498, 546, 780, 857
EagI CGGCCG 3 cut(s) 498, 546, 857
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
EciI GGCGGA 3 cut(s) 129, 141, 572
Ecl136II GAGCTC 1 cut(s) 233
EclXI CGGCCG 3 cut(s) 498, 546, 857
Eco24I GRGCYC 4 cut(s) 203, 235, 388, 584
Eco31I GGTCTC 1 cut(s) 812
Eco47I GGWCC 1 cut(s) 481
Eco52I CGGCCG 3 cut(s) 498, 546, 857
Eco53kI GAGCTC 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 233
EcoO109I RGGNCCY 2 cut(s) 384, 385
EcoRII CCWGG 1 cut(s) 211
EcoT38I GRGCYC 4 cut(s) 203, 235, 388, 584
FaeI CATG 7 cut(s) 176, 241, 574, 610, 631, 649, 781
FaqI GGGAC 1 cut(s) 448
FatI CATG 7 cut(s) 172, 237, 570, 606, 627, 645, 777
FauI CCCGC 5 cut(s) 190, 347, 374, 591, 796
FokI GGATG 4 cut(s) 233, 589, 892, 1000
FriOI GRGCYC 4 cut(s) 203, 235, 388, 584
FspBI CTAG 2 cut(s) 719, 726
GlaI GCGC 1 cut(s) 454
GsaI CCCAGC 2 cut(s) 470, 879
HaeII RGCGCY 1 cut(s) 456
HapII CCGG 7 cut(s) 35, 484, 501, 549, 783, 800, 839
HgaI GACGC 2 cut(s) 382, 769
HhaI GCGC 1 cut(s) 455
Hin1I GRCGYC 1 cut(s) 761
Hin1II CATG 7 cut(s) 176, 241, 574, 610, 631, 649, 781
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HinfI GANTC 2 cut(s) 287, 952
HpaII CCGG 7 cut(s) 35, 484, 501, 549, 783, 800, 839
HphI GGTGA 2 cut(s) 56, 916
Hpy188I TCNGA 2 cut(s) 481, 705
Hpy188III TCNNGA 6 cut(s) 29, 173, 817, 956, 1002, 1028
Hpy99I CGWCG 1 cut(s) 511
HpyAV CCTTC 3 cut(s) 146, 171, 357
HpyCH4III ACNGT 2 cut(s) 539, 870
HpyCH4V TGCA 2 cut(s) 351, 417
HpyF10VI GCNNNNNNNGC 9 cut(s) 230, 239, 348, 414, 549, 554, 760, 805, 872
HpyF3I CTNAG 1 cut(s) 300
Hsp92I GRCGYC 1 cut(s) 761
Hsp92II CATG 7 cut(s) 176, 241, 574, 610, 631, 649, 781
HspAI GCGC 1 cut(s) 453
KpnI GGTACC 1 cut(s) 839
KroI GCCGGC 2 cut(s) 548, 799
KroNI GCCGGC 2 cut(s) 550, 801
KspI CCGCGG 1 cut(s) 281
Kzo9I GATC 6 cut(s) 31, 204, 226, 734, 790, 1009
LmnI GCTCC 2 cut(s) 432, 722
Lsp1109I GCAGC 7 cut(s) 58, 61, 144, 401, 462, 486, 766
MaeI CTAG 2 cut(s) 719, 726
MalI GATC 6 cut(s) 33, 206, 228, 736, 792, 1011
MboI GATC 6 cut(s) 31, 204, 226, 734, 790, 1009
MboII GAAGA 2 cut(s) 3, 919
MfeI CAATTG 1 cut(s) 40
MflI RGATCY 1 cut(s) 790
MhlI GDGCHC 5 cut(s) 203, 235, 388, 584, 868
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 7 cut(s) 40, 520, 637, 670, 745, 914, 997
MluNI TGGCCA 1 cut(s) 242
MmeI TCCRAC 2 cut(s) 661, 768
Mox20I TGGCCA 1 cut(s) 242
MreI CGCCGGCG 1 cut(s) 799
MroNI GCCGGC 2 cut(s) 548, 799
MscI TGGCCA 1 cut(s) 242
MseI TTAA 4 cut(s) 74, 530, 635, 744
MslI CAYNNNNRTG 3 cut(s) 271, 575, 626
Msp20I TGGCCA 1 cut(s) 242
MspA1I CMGCKG 3 cut(s) 157, 280, 825
MspI CCGG 7 cut(s) 35, 484, 501, 549, 783, 800, 839
MspR9I CCNGG 3 cut(s) 213, 784, 840
MunI CAATTG 1 cut(s) 40
MvaI CCWGG 1 cut(s) 213
MvnI CGCG 2 cut(s) 280, 376
MwoI GCNNNNNNNGC 9 cut(s) 230, 239, 348, 414, 549, 554, 760, 805, 872
NaeI GCCGGC 2 cut(s) 550, 801
NciI CCSGG 2 cut(s) 784, 840
NdeII GATC 6 cut(s) 31, 204, 226, 734, 790, 1009
NgoMIV GCCGGC 2 cut(s) 548, 799
NheI GCTAGC 1 cut(s) 725
NlaIII CATG 7 cut(s) 176, 241, 574, 610, 631, 649, 781
NlaIV GGNNCC 5 cut(s) 385, 386, 442, 792, 837
NmeAIII GCCGAG 2 cut(s) 533, 885
PagI TCATGA 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 503
PdiI GCCGGC 2 cut(s) 550, 801
PfeI GAWTC 2 cut(s) 287, 952
PflFI GACNNNGTC 1 cut(s) 763
Psp124BI GAGCTC 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 211
PspFI CCCAGC 2 cut(s) 466, 875
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 5 cut(s) 385, 386, 442, 792, 837
PspOMI GGGCCC 1 cut(s) 384
PspPI GGNCC 4 cut(s) 384, 385, 481, 511
PstI CTGCAG 1 cut(s) 419
PsuI RGATCY 1 cut(s) 790
PsyI GACNNNGTC 1 cut(s) 763
RsaI GTAC 2 cut(s) 368, 837
RsaNI GTAC 2 cut(s) 367, 836
RseI CAYNNNNRTG 3 cut(s) 271, 575, 626
Rsr2I CGGWCCG 1 cut(s) 481
RsrII CGGWCCG 1 cut(s) 481
SacI GAGCTC 1 cut(s) 235
SacII CCGCGG 1 cut(s) 281
SaqAI TTAA 4 cut(s) 74, 530, 635, 744
Sau3AI GATC 6 cut(s) 31, 204, 226, 734, 790, 1009
Sau96I GGNCC 4 cut(s) 384, 385, 481, 511
ScrFI CCNGG 3 cut(s) 213, 784, 840
SduI GDGCHC 5 cut(s) 203, 235, 388, 584, 868
SfcI CTRYAG 2 cut(s) 322, 415
Sfr303I CCGCGG 1 cut(s) 281
SgrAI CRCCGGYG 1 cut(s) 799
SgrBI CCGCGG 1 cut(s) 281
SinI GGWCC 1 cut(s) 481
SmiMI CAYNNNNRTG 3 cut(s) 271, 575, 626
Sse9I AATT 7 cut(s) 40, 520, 637, 670, 745, 914, 997
SspMI CTAG 2 cut(s) 719, 726
SstI GAGCTC 1 cut(s) 235
StyD4I CCNGG 3 cut(s) 211, 782, 838
TaaI ACNGT 2 cut(s) 539, 870
TaqI TCGA 4 cut(s) 203, 229, 816, 971
TasI AATT 7 cut(s) 40, 520, 637, 670, 745, 914, 997
TauI GCSGC 4 cut(s) 157, 411, 414, 859
TfiI GAWTC 2 cut(s) 287, 952
Tru1I TTAA 4 cut(s) 74, 530, 635, 744
Tru9I TTAA 4 cut(s) 74, 530, 635, 744
TseI GCWGC 7 cut(s) 46, 49, 157, 414, 450, 474, 754
TspDTI ATGAA 5 cut(s) 595, 665, 689, 766, 1004
TspGWI ACGGA 1 cut(s) 762
Tth111I GACNNNGTC 1 cut(s) 763
VpaK11BI GGWCC 1 cut(s) 481
XapI RAATTY 2 cut(s) 520, 637
XspI CTAG 2 cut(s) 719, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.