pycom12g15650

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0016832
Physical Location & Seq
Reverse (-)
18106708 .. 18107610
903 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGTCTTCTGTGGAAGTTCCACTATCTCAATCTTCAAACCCAAATGACACTTTTGATGTTCATCAGCCTAAGCCTTCAGCCACTTTTTCTCCCAGCATTTGGGGTGACCATTTTCTGTCCTACGCTTCTTTGGAAGTGGATGCTGAACTTGAACAACATGTACAAGAACTGAAGGAAGAAGTGAGAAGGATGCTAACGACATCACCAGAAAATGTTTCCCAAAAGTTGAACTTGATCGATGACATTCAGCACTTAGGTGTGTCCTACCATTTTGGAAATGAAATTGAAGAAATTTTACAGAAAATTCACAAGAGCTCTTATGATTTGGATGACCTGTACACAGCTGCTCTTCTTTTTCGATTGCTTAGACAACAAGGTTATAACGTTTCATGTGGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

134

Amino Acids

15.14

Weight (kDa)

4.85

Isoelectric Point (pI)

66.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 33 - 131 1.3e-31 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016832)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g27941
prunus_persica Prupe.4G238800_v2.0.a1
pyrus_communis pycom03g15650 pycom12g15550 pycom12g15650
rosa_chinensis RchiOBHm_Chr4g0399341
rosa_laevigata RLG00000035298
rosa_roxburghii Rroxscaffold_5G00344270
rosa_rugosa Rorug01G0225900 Rorug04G0016800
rosa_samantha Rh1AG240000 Rh5BG405500 Rh6AG030200 Rh7CG421600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AccB7I CCANNNNNTGG 1 cut(s) 99
AclI AACGTT 1 cut(s) 384
AcsI RAATTY 2 cut(s) 291, 303
AcuI CTGAAG 2 cut(s) 60, 191
AfaI GTAC 2 cut(s) 162, 338
AfiI CCNNNNNNNGG 1 cut(s) 99
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 4 cut(s) 36, 152, 229, 287
AleI CACNNNNGTG 1 cut(s) 255
AluBI AGCT 2 cut(s) 315, 344
AluI AGCT 2 cut(s) 315, 344
Alw21I GWGCWC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 2 cut(s) 291, 303
AsuHPI GGTGA 2 cut(s) 116, 195
BanII GRGCYC 1 cut(s) 317
BarI GAAGNNNNNNTAC 2 cut(s) 279, 311
Bbv12I GWGCWC 1 cut(s) 317
BbvI GCAGC 1 cut(s) 331
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
BmsI GCATC 2 cut(s) 130, 180
Bpu10I CCTNAGC 1 cut(s) 69
Bsa29I ATCGAT 1 cut(s) 237
BsaBI GATNNNNATC 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse8I GATNNNNATC 1 cut(s) 60
BseCI ATCGAT 1 cut(s) 237
BseGI GGATG 3 cut(s) 145, 195, 334
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 331
BseYI CCCAGC 1 cut(s) 92
BshVI ATCGAT 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 317
Bsp1407I TGTACA 2 cut(s) 160, 336
Bsp143I GATC 1 cut(s) 234
BspDI ATCGAT 1 cut(s) 237
BspQI GCTCTTC 1 cut(s) 354
BsrGI TGTACA 2 cut(s) 160, 336
BssMI GATC 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 354
BstAUI TGTACA 2 cut(s) 160, 336
BstDEI CTNAG 3 cut(s) 69, 253, 365
BstEII GGTNACC 1 cut(s) 104
BstF5I GGATG 3 cut(s) 145, 195, 334
BstKTI GATC 1 cut(s) 237
BstMBI GATC 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 161
BstPI GGTNACC 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 331
Bsu15I ATCGAT 1 cut(s) 237
BsuTUI ATCGAT 1 cut(s) 237
BtsCI GGATG 3 cut(s) 145, 195, 334
ClaI ATCGAT 1 cut(s) 237
Csp6I GTAC 2 cut(s) 161, 337
CviAII CATG 2 cut(s) 158, 390
CviJI RGCY 5 cut(s) 67, 73, 80, 315, 344
CviKI_1 RGCY 5 cut(s) 67, 73, 80, 315, 344
CviQI GTAC 2 cut(s) 161, 337
DdeI CTNAG 3 cut(s) 69, 253, 365
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 315
Eco57I CTGAAG 2 cut(s) 60, 191
Eco91I GGTNACC 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 315
EcoO65I GGTNACC 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 317
FaeI CATG 2 cut(s) 161, 393
FaiI YATR 4 cut(s) 159, 321, 381, 391
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 2 cut(s) 157, 389
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 3 cut(s) 152, 202, 341
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 1 cut(s) 345
GluI GCNGC 1 cut(s) 345
GsaI CCCAGC 1 cut(s) 96
Hin1II CATG 2 cut(s) 161, 393
HphI GGTGA 2 cut(s) 116, 195
Hpy166II GTNNAC 1 cut(s) 339
Hpy8I GTNNAC 1 cut(s) 339
HpyAV CCTTC 3 cut(s) 84, 166, 180
HpyCH4IV ACGT 1 cut(s) 384
HpyF3I CTNAG 3 cut(s) 69, 253, 365
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 2 cut(s) 161, 393
Kzo9I GATC 1 cut(s) 234
LguI GCTCTTC 1 cut(s) 354
LpnPI CCDG 3 cut(s) 106, 219, 347
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 2 cut(s) 130, 180
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 4 cut(s) 24, 188, 299, 341
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 3 cut(s) 282, 291, 303
MslI CAYNNNNRTG 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 344
NdeII GATC 1 cut(s) 234
NlaIII CATG 2 cut(s) 161, 393
NmuCI GTSAC 1 cut(s) 104
NspI RCATGY 1 cut(s) 161
OliI CACNNNNGTG 1 cut(s) 255
PciI ACATGT 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 354
PflMI CCANNNNNTGG 1 cut(s) 99
PkrI GCNGC 1 cut(s) 346
PscI ACATGT 1 cut(s) 157
PsiI TTATAA 1 cut(s) 381
Psp124BI GAGCTC 1 cut(s) 317
Psp1406I AACGTT 1 cut(s) 384
PspEI GGTNACC 1 cut(s) 104
PspFI CCCAGC 1 cut(s) 92
PsrI GAACNNNNNNTAC 2 cut(s) 144, 176
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 2 cut(s) 162, 338
RsaNI GTAC 2 cut(s) 161, 337
RseI CAYNNNNRTG 1 cut(s) 255
SacI GAGCTC 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 354
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 1 cut(s) 234
SduI GDGCHC 1 cut(s) 317
SetI ASST 6 cut(s) 259, 317, 336, 346, 379, 387
SfaNI GCATC 2 cut(s) 130, 180
SgeI CNNG 9 cut(s) 105, 161, 170, 176, 218, 244, 322, 346, 386
SmiMI CAYNNNNRTG 1 cut(s) 255
Sse9I AATT 3 cut(s) 282, 291, 303
SstI GAGCTC 1 cut(s) 317
TaiI ACGT 1 cut(s) 387
TaqI TCGA 2 cut(s) 237, 358
TasI AATT 3 cut(s) 282, 291, 303
TatI WGTACW 2 cut(s) 160, 336
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 3 cut(s) 50, 294, 378
Van91I CCANNNNNTGG 1 cut(s) 99
XapI RAATTY 2 cut(s) 291, 303
XceI RCATGY 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.