Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005982

Physical Location & Seq

Genomic Coordinates Forward (+)

21379641 .. 21382089

Gene Structure 2449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGCAGCTTGAGGCAACAACCCAGTTTAGGAAGTTGCTTTCAATTGAACGTAGCCCTCCGATTGAGGAAGTCATACAAGCGGGTGTCGTTCCTCGCTTTGTTGAGTTTCTAATGAGGGAGGATTTTCCACAACTTCAGTTTGAGGCTGCTTGGGCTCTTACAAATATTGCATCTGGGACATCTGATAATACAAAGGTGGTAATTGGTCAGGGAGCTGTTCCGATATTTGTGAAACTGCTTAGTTCTCCGAGTGATGATGTTCGTGAGCAGGCTGTTTGGGCATTGGGAAATGTTGCTGGTGATTCCCCTAGTTGCCGTGATCTTGTACTTGGTAATGGGGCTTTGCTTCCATTGCTTTCACAGCTTAATGAGAATGCAAAGCTCTCTATGCTGAGAAACGCAACTTGGACACTGTCAAATTTTTGCAGGGGCAAACCACAGCCTCCATTTGATCAGGTTAAGCCTGCCCTTCCTGCTCTTGCGCGTTTGATTCATTCAAATGATGAAGAAGTCTTGACTGATGCTTGTTGGGCTCTTTCGTACCTTTCTGATGGTACAAATGACAAAATCCAAGCCGTTATTGAATCTGGAGTGTGCCCCCGGCTTGTTGAGCTTTTAATGCATCCATCTCCATCAGTTCTCATTCCTGCTCTCCGCACAGTTGGAAATATTGTTACTGGAGATGATATGCAAACTCAGGTTATCATCCAACATCAAGCTCTTCCTTGTCTGCTAAATCTTTTGACTAACAATTACAAAAAGAGCATCAAGAAGGAAGCTTGCTGGACTATTTCAAATATCACAGCTGGAAACAAGGAACAGATCCGGGCTGTAGTTGAGGCTAATATAATCGGCCCTCTTGTTAATCTGCTTCAAAATGCTGAGTTTGATATAAAGAAAGAGGCTGCATGGGCAATCTCAAATGCTACATCTGGTGGTTCTCATGAGCAGATAAAGTTTCTAGTTAGTCAAGGTTGTATCAAGCCGCTGTGTGATCTTCTTGTTTGCCCAGATCCTAGAATTGTTACAGTTTGTTTAGAAGGCCTGGAGAACATTTTGAAGGTTGGTGAAGCCGAGAAGAACTTGGGTACTACTGGAGGTGTGAATCTCTATGCTCAGGCGATTGAAGATGCTGATGGTTTGGAGAAAATTGAGTCTCTGCAGAGTCATGACAATACAGAGATTTATGAGAAGGCAGTAAAGATGCTCGAGACATATTGGTTGGAGGACGACGATGAAACAATGCCACCAGGTGATGCTGCTTCAACTGCGTTCAACTTTGGAGGGAATGACGTTCCAACTGTCCCATCTGGTGGATTCAACTTCGGCAAACATTCCTCAGCAAGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm Arm_3 IBB

Protein Analysis

451

Amino Acids

48.9

Weight (kDa)

4.79

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm	PF00514	18 - 58	5.9e-11	Armadillo/beta-catenin-like repeat
HEAT_2	PF13646	31 - 102	2.3e-06	HEAT repeats
HEAT_EZ	PF13513	43 - 98	3.1e-09	HEAT-like repeat
Arm	PF00514	61 - 99	1.5e-12	Armadillo/beta-catenin-like repeat
Arm	PF00514	102 - 143	2e-06	Armadillo/beta-catenin-like repeat
Arm	PF00514	156 - 184	2.8e-08	Armadillo/beta-catenin-like repeat
Arm	PF00514	187 - 225	6.2e-10	Armadillo/beta-catenin-like repeat
ARM_ARMC5	PF24768	217 - 383	4.3e-11	ARMC5
Arm	PF00514	229 - 269	1.8e-10	Armadillo/beta-catenin-like repeat
Arm	PF00514	271 - 310	4.8e-12	Armadillo/beta-catenin-like repeat
Arm	PF00514	314 - 353	1.2e-07	Armadillo/beta-catenin-like repeat
Arm_3	PF16186	369 - 415	8.1e-20	Atypical Arm repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02150 AT4G02150
fragaria_vesca	FvH4_6g07130
malus_domestica	MD04G1196000.v1.1 MD07G1209900.v1.1 MD12G1208700.v1.1
prunus_persica	Prupe.6G315900_v2.0.a1 Prupe.6G315900_v2.0.a1 Prupe.6G315900_v2.0.a1
pyrus_communis	pycom04g17330 pycom12g19610
rosa_chinensis	RchiOBHm_Chr3g0456721 RchiOBHm_Chr7g0191281 RchiOBHm_Chr7g0191291
rosa_laevigata	RLG00000025281 RLG00000027861
rosa_multiflora	Rmu_co8463855.1_g000001 Rmu_sc0000133.1_g000026 Rmu_sc0037422.1_g000002
rosa_roxburghii	Rroxscaffold_11G00450370 Rroxscaffold_6G00422510
rosa_rugosa	Rorug03G0015300
rosa_samantha	Rh3AG075800 Rh3BG077700 Rh3CG077500 Rh3DG079400
rosa_wichuraiana	Rw3G006500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1313
AccII	CGCG	1 cut(s)	484
AciI	CCGC	3 cut(s)	80, 655, 986
AclWI	GGATC	2 cut(s)	817, 1007
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	119
AdeI	CACNNNGTG	1 cut(s)	1253
AfaI	GTAC	4 cut(s)	327, 542, 556, 1090
AfiI	CCNNNNNNNGG	3 cut(s)	27, 1313, 1344
AjnI	CCWGG	2 cut(s)	1044, 1249
AjuI	GAANNNNNNNTTGG	2 cut(s)	388, 420
AluBI	AGCT	8 cut(s)	7, 215, 364, 382, 613, 719, 779, 806
AluI	AGCT	8 cut(s)	7, 215, 364, 382, 613, 719, 779, 806
Alw26I	GTCTC	2 cut(s)	1161, 1205
AlwI	GGATC	2 cut(s)	817, 1007
Ama87I	CYCGRG	1 cut(s)	1208
AoxI	GGCC	2 cut(s)	853, 1042
ApeKI	GCWGC	4 cut(s)	4, 146, 905, 1259
ApoI	RAATTY	1 cut(s)	418
AspLEI	GCGC	1 cut(s)	484
AspS9I	GGNCC	1 cut(s)	854
AsuC2I	CCSGG	2 cut(s)	601, 827
AsuHPI	GGTGA	3 cut(s)	311, 1079, 1265
AvaI	CYCGRG	1 cut(s)	1208
BaeGI	GKGCMC	1 cut(s)	599
BanII	GRGCYC	2 cut(s)	157, 535
BbvCI	CCTCAGC	1 cut(s)	1339
BbvI	GCAGC	4 cut(s)	16, 133, 892, 1246
BccI	CCATC	5 cut(s)	545, 634, 640, 1130, 1315
BceAI	ACGGC	2 cut(s)	300, 560
BciT130I	CCWGG	2 cut(s)	1046, 1251
BclI	TGATCA	1 cut(s)	451
BcnI	CCSGG	2 cut(s)	601, 827
BcoDI	GTCTC	2 cut(s)	1161, 1205
BfaI	CTAG	3 cut(s)	309, 962, 1017
BfmI	CTRYAG	2 cut(s)	831, 1160
BisI	GCNGC	5 cut(s)	5, 147, 906, 986, 1260
BlsI	GCNGC	5 cut(s)	6, 148, 907, 987, 1261
Bme1390I	CCNGG	4 cut(s)	601, 827, 1046, 1251
BmeT110I	CYCGRG	1 cut(s)	1208
BmgT120I	GGNCC	1 cut(s)	854
BmrFI	CCNGG	4 cut(s)	601, 827, 1046, 1251
BmrI	ACTGGG	1 cut(s)	16
BmsI	GCATC	7 cut(s)	179, 511, 631, 774, 1120, 1194, 1246
BmuI	ACTGGG	1 cut(s)	16
BpmI	CTGGAG	4 cut(s)	609, 699, 1067, 1116
Bpu10I	CCTNAGC	2 cut(s)	1116, 1339
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	2 cut(s)	601, 827
BsaJI	CCNNGG	1 cut(s)	599
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 1313, 1344
Bse1I	ACTGG	3 cut(s)	22, 682, 1099
Bse3DI	GCAATG	1 cut(s)	350
BseBI	CCWGG	2 cut(s)	1046, 1251
BseDI	CCNNGG	1 cut(s)	599
BseGI	GGATG	2 cut(s)	622, 705
BseLI	CCNNNNNNNGG	3 cut(s)	27, 1313, 1344
BseMI	GCAATG	1 cut(s)	350
BseMII	CTCAG	5 cut(s)	383, 710, 873, 1130, 1353
BseNI	ACTGG	3 cut(s)	22, 682, 1099
BseSI	GKGCMC	1 cut(s)	599
BseXI	GCAGC	4 cut(s)	16, 133, 892, 1246
Bsh1236I	CGCG	1 cut(s)	484
BshFI	GGCC	2 cut(s)	855, 1044
BsiHKCI	CYCGRG	1 cut(s)	1208
BsiSI	CCGG	2 cut(s)	601, 826
BslFI	GGGAC	2 cut(s)	190, 1289
BslI	CCNNNNNNNGG	3 cut(s)	27, 1313, 1344
BsmAI	GTCTC	2 cut(s)	1161, 1205
BsmFI	GGGAC	2 cut(s)	190, 1289
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	855, 1044
BsoBI	CYCGRG	1 cut(s)	1208
Bsp1286I	GDGCHC	3 cut(s)	157, 535, 599
Bsp143I	GATC	5 cut(s)	319, 451, 822, 994, 1012
BspACI	CCGC	3 cut(s)	80, 655, 986
BspANI	GGCC	2 cut(s)	855, 1044
BspCNI	CTCAG	5 cut(s)	384, 709, 874, 1129, 1352
BspFNI	CGCG	1 cut(s)	484
BspHI	TCATGA	2 cut(s)	943, 1168
BspMAI	CTGCAG	1 cut(s)	1164
BspPI	GGATC	2 cut(s)	817, 1007
BspQI	GCTCTTC	1 cut(s)	726
BsrDI	GCAATG	1 cut(s)	350
BsrI	ACTGG	3 cut(s)	22, 682, 1099
BssECI	CCNNGG	1 cut(s)	599
BssMI	GATC	5 cut(s)	319, 451, 822, 994, 1012
Bst2UI	CCWGG	2 cut(s)	1046, 1251
Bst4CI	ACNGT	4 cut(s)	414, 661, 1030, 1303
Bst6I	CTCTTC	1 cut(s)	726
BstC8I	GCNNGC	3 cut(s)	270, 465, 781
BstDEI	CTNAG	6 cut(s)	239, 392, 696, 882, 1116, 1339
BstENI	CCTNNNNNAGG	1 cut(s)	1342
BstF5I	GGATG	2 cut(s)	622, 705
BstFNI	CGCG	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	5 cut(s)	322, 454, 825, 997, 1015
BstMAI	GTCTC	2 cut(s)	1161, 1205
BstMBI	GATC	5 cut(s)	319, 451, 822, 994, 1012
BstNI	CCWGG	2 cut(s)	1046, 1251
BstSCI	CCNGG	4 cut(s)	599, 825, 1044, 1249
BstSFI	CTRYAG	2 cut(s)	831, 1160
BstSLI	GKGCMC	1 cut(s)	599
BstUI	CGCG	1 cut(s)	484
BstV1I	GCAGC	4 cut(s)	16, 133, 892, 1246
BstX2I	RGATCY	2 cut(s)	822, 1012
BstYI	RGATCY	2 cut(s)	822, 1012
BsuRI	GGCC	2 cut(s)	855, 1044
BtsCI	GGATG	2 cut(s)	622, 705
BtsIMutI	CAGTG	1 cut(s)	410
Cac8I	GCNNGC	3 cut(s)	270, 465, 781
CciI	TCATGA	2 cut(s)	943, 1168
CfoI	GCGC	1 cut(s)	484
Cfr13I	GGNCC	1 cut(s)	854
CsiI	ACCWGGT	1 cut(s)	1249
Csp6I	GTAC	4 cut(s)	326, 541, 555, 1089
CviAII	CATG	3 cut(s)	909, 944, 1169
CviQI	GTAC	4 cut(s)	326, 541, 555, 1089
DdeI	CTNAG	6 cut(s)	239, 392, 696, 882, 1116, 1339
DpnI	GATC	5 cut(s)	321, 453, 824, 996, 1014
DpnII	GATC	5 cut(s)	319, 451, 822, 994, 1012
DraIII	CACNNNGTG	1 cut(s)	1253
Eam1104I	CTCTTC	1 cut(s)	726
EarI	CTCTTC	1 cut(s)	726
Eco147I	AGGCCT	1 cut(s)	1044
Eco24I	GRGCYC	2 cut(s)	157, 535
Eco57I	CTGAAG	1 cut(s)	119
Eco88I	CYCGRG	1 cut(s)	1208
EcoNI	CCTNNNNNAGG	1 cut(s)	1342
EcoRII	CCWGG	2 cut(s)	1044, 1249
EcoT22I	ATGCAT	1 cut(s)	624
EcoT38I	GRGCYC	2 cut(s)	157, 535
FaeI	CATG	3 cut(s)	912, 947, 1172
FaqI	GGGAC	2 cut(s)	190, 1289
FatI	CATG	3 cut(s)	908, 943, 1168
FauI	CCCGC	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	451
Fnu4HI	GCNGC	5 cut(s)	5, 147, 906, 986, 1260
FokI	GGATG	2 cut(s)	609, 692
FriOI	GRGCYC	2 cut(s)	157, 535
Fsp4HI	GCNGC	5 cut(s)	5, 147, 906, 986, 1260
FspBI	CTAG	3 cut(s)	309, 962, 1017
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	5 cut(s)	5, 147, 906, 986, 1260
GsuI	CTGGAG	4 cut(s)	609, 699, 1067, 1116
HaeIII	GGCC	2 cut(s)	855, 1044
HapII	CCGG	2 cut(s)	601, 826
HhaI	GCGC	1 cut(s)	484
Hin1II	CATG	3 cut(s)	912, 947, 1172
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HindIII	AAGCTT	1 cut(s)	777
HinfI	GANTC	7 cut(s)	302, 490, 584, 1105, 1154, 1165, 1317
HpaII	CCGG	2 cut(s)	601, 826
HphI	GGTGA	3 cut(s)	311, 1079, 1265
Hpy188I	TCNGA	5 cut(s)	60, 184, 222, 249, 550
Hpy188III	TCNNGA	7 cut(s)	263, 514, 588, 769, 944, 1169, 1210
Hpy99I	CGWCG	1 cut(s)	1235
HpyAV	CCTTC	5 cut(s)	479, 766, 1034, 1054, 1186
HpyCH4III	ACNGT	4 cut(s)	414, 661, 1030, 1303
HpyCH4IV	ACGT	2 cut(s)	49, 1293
HpyCH4V	TGCA	8 cut(s)	4, 170, 377, 426, 622, 691, 908, 1162
HpyF3I	CTNAG	6 cut(s)	239, 392, 696, 882, 1116, 1339
HpySE526I	ACGT	2 cut(s)	49, 1293
Hsp92II	CATG	3 cut(s)	912, 947, 1172
HspAI	GCGC	1 cut(s)	482
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	5 cut(s)	319, 451, 822, 994, 1012
LguI	GCTCTTC	1 cut(s)	726
LmnI	GCTCC	1 cut(s)	212
Lsp1109I	GCAGC	4 cut(s)	16, 133, 892, 1246
LweI	GCATC	7 cut(s)	179, 511, 631, 774, 1120, 1194, 1246
MabI	ACCWGGT	1 cut(s)	1249
MaeI	CTAG	3 cut(s)	309, 962, 1017
MaeII	ACGT	2 cut(s)	49, 1293
MaeIII	GTNAC	2 cut(s)	673, 1024
MalI	GATC	5 cut(s)	321, 453, 824, 996, 1014
MboI	GATC	5 cut(s)	319, 451, 822, 994, 1012
MboII	GAAGA	5 cut(s)	518, 713, 989, 1090, 1139
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	2 cut(s)	822, 1012
MhlI	GDGCHC	3 cut(s)	157, 535, 599
MluCI	AATT	6 cut(s)	42, 201, 418, 751, 1020, 1149
MlyI	GAGTC	2 cut(s)	1163, 1174
MmeI	TCCRAC	4 cut(s)	643, 733, 1203, 1322
Mph1103I	ATGCAT	1 cut(s)	624
MseI	TTAA	4 cut(s)	366, 459, 617, 864
MslI	CAYNNNNRTG	1 cut(s)	498
MspA1I	CMGCKG	2 cut(s)	806, 988
MspI	CCGG	2 cut(s)	601, 826
MspR9I	CCNGG	4 cut(s)	601, 827, 1046, 1251
MunI	CAATTG	1 cut(s)	42
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	2 cut(s)	1046, 1251
MvnI	CGCG	1 cut(s)	484
NciI	CCSGG	2 cut(s)	601, 827
NdeII	GATC	5 cut(s)	319, 451, 822, 994, 1012
NlaIII	CATG	3 cut(s)	912, 947, 1172
NmeAIII	GCCGAG	1 cut(s)	1099
NsiI	ATGCAT	1 cut(s)	624
PaeR7I	CTCGAG	1 cut(s)	1208
PagI	TCATGA	2 cut(s)	943, 1168
PceI	AGGCCT	1 cut(s)	1044
PciSI	GCTCTTC	1 cut(s)	726
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	5 cut(s)	302, 490, 584, 1105, 1317
PflFI	GACNNNGTC	1 cut(s)	412
PflMI	CCANNNNNTGG	1 cut(s)	1313
PkrI	GCNGC	5 cut(s)	6, 148, 907, 987, 1261
PleI	GAGTC	2 cut(s)	1162, 1173
PpsI	GAGTC	2 cut(s)	1162, 1173
Psp6I	CCWGG	2 cut(s)	1044, 1249
PspGI	CCWGG	2 cut(s)	1044, 1249
PspPI	GGNCC	1 cut(s)	854
PstI	CTGCAG	1 cut(s)	1164
PsuI	RGATCY	2 cut(s)	822, 1012
PsyI	GACNNNGTC	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	806
RsaI	GTAC	4 cut(s)	327, 542, 556, 1090
RsaNI	GTAC	4 cut(s)	326, 541, 555, 1089
RseI	CAYNNNNRTG	1 cut(s)	498
SapI	GCTCTTC	1 cut(s)	726
SaqAI	TTAA	4 cut(s)	366, 459, 617, 864
SatI	GCNGC	5 cut(s)	5, 147, 906, 986, 1260
Sau3AI	GATC	5 cut(s)	319, 451, 822, 994, 1012
Sau96I	GGNCC	1 cut(s)	854
SchI	GAGTC	2 cut(s)	1163, 1174
ScrFI	CCNGG	4 cut(s)	601, 827, 1046, 1251
SduI	GDGCHC	3 cut(s)	157, 535, 599
SexAI	ACCWGGT	1 cut(s)	1249
SfaNI	GCATC	7 cut(s)	179, 511, 631, 774, 1120, 1194, 1246
SfcI	CTRYAG	2 cut(s)	831, 1160
Sfr274I	CTCGAG	1 cut(s)	1208
SlaI	CTCGAG	1 cut(s)	1208
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	2 cut(s)	8, 1208
SmoI	CTYRAG	2 cut(s)	8, 1208
Sse9I	AATT	6 cut(s)	42, 201, 418, 751, 1020, 1149
SseBI	AGGCCT	1 cut(s)	1044
SsiI	CCGC	3 cut(s)	80, 655, 986
SspI	AATATT	2 cut(s)	166, 670
SspMI	CTAG	3 cut(s)	309, 962, 1017
StuI	AGGCCT	1 cut(s)	1044
StyD4I	CCNGG	4 cut(s)	599, 825, 1044, 1249
TaaI	ACNGT	4 cut(s)	414, 661, 1030, 1303
TaiI	ACGT	2 cut(s)	52, 1296
TaqI	TCGA	1 cut(s)	1209
TasI	AATT	6 cut(s)	42, 201, 418, 751, 1020, 1149
TatI	WGTACW	1 cut(s)	325
TauI	GCSGC	1 cut(s)	988
TfiI	GAWTC	5 cut(s)	302, 490, 584, 1105, 1317
Tru1I	TTAA	4 cut(s)	366, 459, 617, 864
Tru9I	TTAA	4 cut(s)	366, 459, 617, 864
TscAI	CASTG	1 cut(s)	417
TseI	GCWGC	4 cut(s)	4, 146, 905, 1259
TspDTI	ATGAA	3 cut(s)	482, 519, 1251
TspRI	CASTG	1 cut(s)	417
Tth111I	GACNNNGTC	1 cut(s)	412
Van91I	CCANNNNNTGG	1 cut(s)	1313
XagI	CCTNNNNNAGG	1 cut(s)	1342
XapI	RAATTY	1 cut(s)	418
XhoI	CTCGAG	1 cut(s)	1208
XspI	CTAG	3 cut(s)	309, 962, 1017
Zsp2I	ATGCAT	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.