Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010026

Physical Location & Seq

Genomic Coordinates Reverse (-)

21394031 .. 21396627

Gene Structure 2597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCGACGAGGAATCGGACCTTGGTTTTCAGAAAGTATAGGGATGCGTTGAAGAGCGTCCGCGCTCCCACGAGCTCCTACGCTTCGCCGTCTACGAGCTCCGGTGGCGGTCCGGTCATTGAATTGGTCAGCACTTCGCTTTTGAATCCCAACCGGAATTATGCCCCGCTCAGTACTGAGGATCCCGGCAATTCAAGTCGTGGTACACTTACTGTTGGTCTACCGCCAGCATGGGTGGATCTATCTGAAGAGATAGCAGCAAATGTGCAGCGTGCACGGGTAAAAATGGCTGAGCTAACTAAGGCTCATGCAAAGGCTTTAATGCCTTCTTTTGGAGACGGTAAAGAAGATCAATCTCTTGTTCGCTTGATTGAGAGTCTTACGCAAGAGATAACTAATTTGATAAGGAAATCCGAGAAGACACTACAGAGACTTTCTGCAGCTGGGCCTTCTGAAGATTCAAATGTTAGAAAAAATGTGCAGCGATCTCTTGCCACTGACCTTCAAACCCTCTCAATGGACCTTCGCAAGAAACAGTCAACTTATTTGAAGCGACTCAGGCAGCAAACAGAGGGTCAAGATGGGGATGATTTAGAGATGAACCTAAATGGAAGTACATCGAGAATGGATGGTGATGATTTGGATGACATGATGTTTAATGAGCGTCAGATGGCCAAGATAAAGAAAAACGAGGCAGTCACAGCAGAAAGGGAAAGAGAGATCGATCTGGTTGTGCAATCTGTGAATGAGCTCGCTCAGATAATGAAGGATTTGGCAGTACTAGTGATAGACCAGGGAACTATTGTTGATAGGATAGACTACAACATCCAGAATGTAGCAAGTACAGTCGATGAGGGCCTCAAGCAATTGCAAAAGGCTGAGAGAACACAGAAACAAGGGGGAATGGTGATGTGTGCTAGCATACTCGTTATCATGTGCTTTGTCATGTTGGTCCTCCTAATTCTCAAGGAGATATTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0002790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006906 GO:0006996 GO:0007030 GO:0007034 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032588 GO:0032940 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

328

Amino Acids

36.33

Weight (kDa)

6.68

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	267 - 319	5.3e-16	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05710 AT3G05710 AT5G26980 AT5G26980 AT5G26980
fragaria_vesca	FvH4_6g07100 FvH4_6g07100 FvH4_6g07100
malus_domestica	MD04G1196100.v1.1 MD12G1209100.v1.1
prunus_persica	Prupe.6G316200_v2.0.a1
pyrus_communis	pycom12g19630
rosa_chinensis	RchiOBHm_Chr3g0456681
rosa_laevigata	RLG00000025284
rosa_roxburghii	Rroxscaffold_11G00450400 Rroxscaffold_6G00422540
rosa_rugosa	Rorug03G0015000
rosa_samantha	Rh3AG075500 Rh3BG077400 Rh3DG079100
rosa_wichuraiana	Rw3G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	169
AccI	GTMKAC	2 cut(s)	92, 220
AccII	CGCG	1 cut(s)	63
AciI	CCGC	4 cut(s)	61, 108, 167, 224
AclWI	GGATC	3 cut(s)	176, 189, 246
AcoI	YGGCCR	1 cut(s)	672
AcuI	CTGAAG	2 cut(s)	267, 474
AfaI	GTAC	5 cut(s)	175, 205, 616, 780, 844
AfiI	CCNNNNNNNGG	2 cut(s)	332, 517
AgsI	TTSAA	7 cut(s)	52, 122, 145, 195, 462, 506, 550
AhlI	ACTAGT	1 cut(s)	781
AjnI	CCWGG	1 cut(s)	792
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	5 cut(s)	75, 99, 295, 443, 751
AluI	AGCT	5 cut(s)	75, 99, 295, 443, 751
Alw21I	GWGCWC	4 cut(s)	77, 101, 277, 753
Alw26I	GTCTC	2 cut(s)	330, 424
Alw44I	GTGCAC	1 cut(s)	273
AlwI	GGATC	3 cut(s)	176, 189, 246
AoxI	GGCC	3 cut(s)	446, 672, 856
ApaLI	GTGCAC	1 cut(s)	273
ApeKI	GCWGC	5 cut(s)	257, 268, 440, 481, 562
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	6 cut(s)	18, 110, 446, 520, 856, 952
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	644, 919
AsuNHI	GCTAGC	1 cut(s)	917
AvaII	GGWCC	4 cut(s)	18, 110, 520, 952
BaeGI	GKGCMC	1 cut(s)	277
BalI	TGGCCA	1 cut(s)	674
BamHI	GGATCC	1 cut(s)	181
BanII	GRGCYC	3 cut(s)	77, 101, 753
BauI	CACGAG	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	4 cut(s)	77, 101, 277, 753
BbvI	GCAGC	5 cut(s)	269, 280, 452, 493, 574
BccI	CCATC	3 cut(s)	575, 623, 664
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	794
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	330, 424
BcuI	ACTAGT	1 cut(s)	781
BfaI	CTAG	2 cut(s)	782, 918
BfmI	CTRYAG	2 cut(s)	425, 438
BisI	GCNGC	5 cut(s)	258, 269, 441, 482, 563
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	5 cut(s)	259, 270, 442, 483, 564
BmcAI	AGTACT	2 cut(s)	175, 780
Bme1390I	CCNGG	2 cut(s)	186, 794
Bme18I	GGWCC	4 cut(s)	18, 110, 520, 952
BmgT120I	GGNCC	6 cut(s)	18, 110, 446, 520, 856, 952
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	2 cut(s)	186, 794
BmsI	GCATC	1 cut(s)	34
BmtI	GCTAGC	1 cut(s)	921
BpiI	GAAGAC	1 cut(s)	425
Bpu1102I	GCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	2 cut(s)	845, 950
BpuMI	CCSGG	1 cut(s)	186
Bsa29I	ATCGAT	1 cut(s)	723
BsaJI	CCNNGG	2 cut(s)	21, 793
BsaWI	WCCGGW	3 cut(s)	101, 112, 153
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 517
BseBI	CCWGG	1 cut(s)	794
BseCI	ATCGAT	1 cut(s)	723
BseDI	CCNNGG	2 cut(s)	21, 793
BseGI	GGATG	5 cut(s)	49, 592, 634, 649, 825
BseLI	CCNNNNNNNGG	2 cut(s)	332, 517
BseMII	CTCAG	6 cut(s)	168, 184, 282, 571, 770, 870
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	5 cut(s)	269, 280, 452, 493, 574
BseYI	CCCAGC	1 cut(s)	443
BsgI	GTGCAG	2 cut(s)	287, 500
Bsh1236I	CGCG	1 cut(s)	63
BshFI	GGCC	3 cut(s)	448, 674, 858
BshVI	ATCGAT	1 cut(s)	723
BsiHKAI	GWGCWC	4 cut(s)	77, 101, 277, 753
BsiSI	CCGG	4 cut(s)	102, 113, 154, 186
BslI	CCNNNNNNNGG	2 cut(s)	332, 517
BsmAI	GTCTC	2 cut(s)	330, 424
BsmBI	CGTCTC	1 cut(s)	330
BsnI	GGCC	3 cut(s)	448, 674, 858
Bsp1286I	GDGCHC	4 cut(s)	77, 101, 277, 753
Bsp143I	GATC	6 cut(s)	181, 238, 349, 485, 720, 724
Bsp1720I	GCTNAGC	1 cut(s)	291
BspACI	CCGC	4 cut(s)	61, 108, 167, 224
BspANI	GGCC	3 cut(s)	448, 674, 858
BspCNI	CTCAG	6 cut(s)	169, 183, 283, 570, 769, 871
BspDI	ATCGAT	1 cut(s)	723
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	442
BspOI	GCTAGC	1 cut(s)	921
BspPI	GGATC	3 cut(s)	176, 189, 246
BspQI	GCTCTTC	1 cut(s)	47
BsrBI	CCGCTC	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	21, 793
BssMI	GATC	6 cut(s)	181, 238, 349, 485, 720, 724
BssSI	CACGAG	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	70
Bst2UI	CCWGG	1 cut(s)	794
Bst4CI	ACNGT	4 cut(s)	214, 341, 537, 847
Bst6I	CTCTTC	2 cut(s)	47, 243
BstC8I	GCNNGC	4 cut(s)	228, 273, 753, 919
BstDEI	CTNAG	7 cut(s)	170, 177, 291, 300, 557, 756, 879
BstF5I	GGATG	5 cut(s)	49, 592, 634, 649, 825
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	6 cut(s)	184, 241, 352, 488, 723, 727
BstMAI	GTCTC	2 cut(s)	330, 424
BstMBI	GATC	6 cut(s)	181, 238, 349, 485, 720, 724
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 559, 701
BstNI	CCWGG	1 cut(s)	794
BstSCI	CCNGG	2 cut(s)	184, 792
BstSFI	CTRYAG	2 cut(s)	425, 438
BstSLI	GKGCMC	1 cut(s)	277
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	5 cut(s)	269, 280, 452, 493, 574
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	2 cut(s)	181, 238
BstYI	RGATCY	2 cut(s)	181, 238
Bsu15I	ATCGAT	1 cut(s)	723
BsuRI	GGCC	3 cut(s)	448, 674, 858
BsuTUI	ATCGAT	1 cut(s)	723
BtsCI	GGATG	5 cut(s)	49, 592, 634, 649, 825
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	4 cut(s)	228, 273, 753, 919
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	6 cut(s)	18, 110, 446, 520, 856, 952
ClaI	ATCGAT	1 cut(s)	723
CpoI	CGGWCCG	1 cut(s)	110
CseI	GACGC	2 cut(s)	46, 653
Csp6I	GTAC	5 cut(s)	174, 204, 615, 779, 843
CspI	CGGWCCG	1 cut(s)	110
CviAII	CATG	5 cut(s)	231, 308, 649, 934, 946
CviQI	GTAC	5 cut(s)	174, 204, 615, 779, 843
DdeI	CTNAG	7 cut(s)	170, 177, 291, 300, 557, 756, 879
DpnI	GATC	6 cut(s)	183, 240, 351, 487, 722, 726
DpnII	GATC	6 cut(s)	181, 238, 349, 485, 720, 724
EaeI	YGGCCR	1 cut(s)	672
Eam1104I	CTCTTC	2 cut(s)	47, 243
EarI	CTCTTC	2 cut(s)	47, 243
Ecl136II	GAGCTC	3 cut(s)	75, 99, 751
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	3 cut(s)	77, 101, 753
Eco47I	GGWCC	4 cut(s)	18, 110, 520, 952
Eco53kI	GAGCTC	3 cut(s)	75, 99, 751
Eco57I	CTGAAG	2 cut(s)	267, 474
EcoICRI	GAGCTC	3 cut(s)	75, 99, 751
EcoO109I	RGGNCCY	1 cut(s)	856
EcoRII	CCWGG	1 cut(s)	792
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	3 cut(s)	77, 101, 753
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	5 cut(s)	234, 311, 652, 937, 949
FaiI	YATR	8 cut(s)	39, 162, 232, 309, 650, 923, 935, 947
FatI	CATG	5 cut(s)	230, 307, 648, 933, 945
FauI	CCCGC	1 cut(s)	174
FblI	GTMKAC	2 cut(s)	92, 220
Fnu4HI	GCNGC	5 cut(s)	258, 269, 441, 482, 563
FokI	GGATG	5 cut(s)	56, 599, 641, 656, 812
FriOI	GRGCYC	3 cut(s)	77, 101, 753
Fsp4HI	GCNGC	5 cut(s)	258, 269, 441, 482, 563
FspBI	CTAG	2 cut(s)	782, 918
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	5 cut(s)	258, 269, 441, 482, 563
GsaI	CCCAGC	1 cut(s)	447
HaeIII	GGCC	3 cut(s)	448, 674, 858
HapII	CCGG	4 cut(s)	102, 113, 154, 186
HgaI	GACGC	2 cut(s)	46, 653
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	5 cut(s)	234, 311, 652, 937, 949
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HinfI	GANTC	5 cut(s)	13, 145, 376, 458, 555
HpaII	CCGG	4 cut(s)	102, 113, 154, 186
HphI	GGTGA	2 cut(s)	644, 919
Hpy166II	GTNNAC	5 cut(s)	93, 206, 221, 275, 540
Hpy188I	TCNGA	7 cut(s)	18, 32, 247, 415, 454, 669, 759
Hpy188III	TCNNGA	3 cut(s)	578, 621, 829
Hpy8I	GTNNAC	5 cut(s)	93, 206, 221, 275, 540
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	5 cut(s)	336, 459, 512, 533, 760
HpyCH4III	ACNGT	4 cut(s)	214, 341, 537, 847
HpyCH4V	TGCA	7 cut(s)	268, 275, 311, 440, 481, 736, 871
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 559, 701
HpyF3I	CTNAG	7 cut(s)	170, 177, 291, 300, 557, 756, 879
Hsp92II	CATG	5 cut(s)	234, 311, 652, 937, 949
HspAI	GCGC	1 cut(s)	63
Kzo9I	GATC	6 cut(s)	181, 238, 349, 485, 720, 724
LguI	GCTCTTC	1 cut(s)	47
LmnI	GCTCC	3 cut(s)	70, 80, 104
Lsp1109I	GCAGC	5 cut(s)	269, 280, 452, 493, 574
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	2 cut(s)	782, 918
MaeIII	GTNAC	1 cut(s)	697
MalI	GATC	6 cut(s)	183, 240, 351, 487, 722, 726
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	6 cut(s)	181, 238, 349, 485, 720, 724
MboII	GAAGA	5 cut(s)	64, 260, 359, 430, 467
MfeI	CAATTG	1 cut(s)	866
MflI	RGATCY	2 cut(s)	181, 238
MhlI	GDGCHC	4 cut(s)	77, 101, 277, 753
MlsI	TGGCCA	1 cut(s)	674
MluCI	AATT	6 cut(s)	122, 157, 190, 397, 866, 960
MluNI	TGGCCA	1 cut(s)	674
MlyI	GAGTC	2 cut(s)	385, 549
MnlI	CCTC	8 cut(s)	3, 172, 521, 565, 685, 847, 869, 965
Mox20I	TGGCCA	1 cut(s)	674
MscI	TGGCCA	1 cut(s)	674
MseI	TTAA	2 cut(s)	320, 657
Msp20I	TGGCCA	1 cut(s)	674
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	4 cut(s)	102, 113, 154, 186
MspR9I	CCNGG	2 cut(s)	186, 794
MunI	CAATTG	1 cut(s)	866
MvaI	CCWGG	1 cut(s)	794
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	3 cut(s)	105, 559, 701
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	6 cut(s)	181, 238, 349, 485, 720, 724
NheI	GCTAGC	1 cut(s)	917
NlaIII	CATG	5 cut(s)	234, 311, 652, 937, 949
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	697
PciSI	GCTCTTC	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PfeI	GAWTC	3 cut(s)	13, 145, 458
PkrI	GCNGC	5 cut(s)	259, 270, 442, 483, 564
PleI	GAGTC	2 cut(s)	384, 549
PpsI	GAGTC	2 cut(s)	384, 549
Psp124BI	GAGCTC	3 cut(s)	77, 101, 753
Psp6I	CCWGG	1 cut(s)	792
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	792
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	6 cut(s)	18, 110, 446, 520, 856, 952
PstI	CTGCAG	1 cut(s)	442
PsuI	RGATCY	2 cut(s)	181, 238
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	5 cut(s)	175, 205, 616, 780, 844
RsaNI	GTAC	5 cut(s)	174, 204, 615, 779, 843
Rsr2I	CGGWCCG	1 cut(s)	110
RsrII	CGGWCCG	1 cut(s)	110
SacI	GAGCTC	3 cut(s)	77, 101, 753
SapI	GCTCTTC	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	320, 657
SatI	GCNGC	5 cut(s)	258, 269, 441, 482, 563
Sau3AI	GATC	6 cut(s)	181, 238, 349, 485, 720, 724
Sau96I	GGNCC	6 cut(s)	18, 110, 446, 520, 856, 952
ScaI	AGTACT	2 cut(s)	175, 780
SchI	GAGTC	2 cut(s)	385, 549
ScrFI	CCNGG	2 cut(s)	186, 794
SduI	GDGCHC	4 cut(s)	77, 101, 277, 753
SetI	ASST	9 cut(s)	23, 77, 101, 297, 445, 504, 525, 606, 753
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	2 cut(s)	425, 438
SinI	GGWCC	4 cut(s)	18, 110, 520, 952
SmlI	CTYRAG	2 cut(s)	860, 965
SmoI	CTYRAG	2 cut(s)	860, 965
SpeI	ACTAGT	1 cut(s)	781
Sse9I	AATT	6 cut(s)	122, 157, 190, 397, 866, 960
SsiI	CCGC	4 cut(s)	61, 108, 167, 224
SspMI	CTAG	2 cut(s)	782, 918
SstI	GAGCTC	3 cut(s)	77, 101, 753
StyD4I	CCNGG	2 cut(s)	184, 792
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	4 cut(s)	214, 341, 537, 847
TaqI	TCGA	3 cut(s)	620, 723, 849
TasI	AATT	6 cut(s)	122, 157, 190, 397, 866, 960
TatI	WGTACW	4 cut(s)	173, 614, 778, 842
TfiI	GAWTC	3 cut(s)	13, 145, 458
Tru1I	TTAA	2 cut(s)	320, 657
Tru9I	TTAA	2 cut(s)	320, 657
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	5 cut(s)	257, 268, 440, 481, 562
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	2 cut(s)	614, 779
TspRI	CASTG	1 cut(s)	502
VneI	GTGCAC	1 cut(s)	273
VpaK11BI	GGWCC	4 cut(s)	18, 110, 520, 952
XmiI	GTMKAC	2 cut(s)	92, 220
XspI	CTAG	2 cut(s)	782, 918
ZrmI	AGTACT	2 cut(s)	175, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.