Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0011328

Physical Location & Seq

Genomic Coordinates Forward (+)

21759309 .. 21760142

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCAGTTCCTGACCAAATTCAAATCCAAGAGCGTCGAAACATCCACTTTCCCTCCTAAACGCATCGTTTTCGTTTCCCCAGAAAACTCAGAGAGAATGGAGACCACGAAAGTCACCAAGGGCGCCGGCGGAAGAAGAGGCGGAGAGAGGAAGAAGTCGGTGTCTAAGTCAGTAAAAGCCGGCCTCCAGTTCCCCGTCGGTCGTATCGCACGTTTCCTAAAAAAGGGCCGCTACGCCCAGCGCACCGGTACCGGCGCTCCCATTTACCTCGCCGCAGTCCTCGAATACCTCGCAGCCGAGGTGCTGGAGTTGGCGGGAAACGCGGCGCGTGACAACAAGAAGACGCGGATCAACCCGAGGCACGTGCTCCTGGCCGTGAGAAACGACGAGGAGCTTGGAAAGCTCCTCGCCGGAGTGACCATCGCAAGTGGCGGCGTGCTCCCGAACATCAACCCAGTCTTGCTTCCGAAGAAGACCTCCGGCTCCCAGGAAGGCGAGAAGGCGCCCAAATCTCCCAAGGCAGCAAAGTCGCCCAAGAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

182

Amino Acids

19.47

Weight (kDa)

10.57

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	49 - 127	5.3e-12	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	130 - 162	2.6e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27670 AT5G59870
malus_domestica	MD04G1201800.v1.1 MD12G1215400.v1.1 MD12G1215500.v1.1
prunus_persica	Prupe.6G322000_v2.0.a1
pyrus_communis	pycom04g17800 pycom12g20130 pycom12g20140
rosa_chinensis	RchiOBHm_Chr3g0455491
rosa_laevigata	RLG00000025354
rosa_multiflora	Rmu_sc0010428.1_g000004 Rmu_sc0016199.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424210
rosa_rugosa	Rorug03G0008000 Rorug03G0008100 Rorug03G0008200
rosa_samantha	Rh3CG068400 Rh3DG070000
rosa_wichuraiana	Rw3G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	3 cut(s)	122, 248, 502
AccII	CGCG	3 cut(s)	323, 328, 346
AciI	CCGC	8 cut(s)	129, 141, 229, 273, 314, 323, 346, 432
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	17
AcvI	CACGTG	1 cut(s)	364
AcyI	GRCGYC	2 cut(s)	123, 503
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgeI	ACCGGT	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	2 cut(s)	369, 486
AluBI	AGCT	2 cut(s)	394, 403
AluI	AGCT	2 cut(s)	394, 403
Alw21I	GWGCWC	2 cut(s)	369, 441
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	356
AlwNI	CAGNNNCTG	1 cut(s)	10
Ama87I	CYCGRG	1 cut(s)	355
AoxI	GGCC	3 cut(s)	181, 226, 372
ApeKI	GCWGC	2 cut(s)	293, 521
ApoI	RAATTY	1 cut(s)	17
AsiGI	ACCGGT	1 cut(s)	245
Asp718I	GGTACC	1 cut(s)	248
AspLEI	GCGC	5 cut(s)	125, 243, 257, 328, 505
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	355
BanI	GGYRCC	3 cut(s)	122, 248, 502
BbrPI	CACGTG	1 cut(s)	364
BbsI	GAAGAC	2 cut(s)	347, 479
Bbv12I	GWGCWC	2 cut(s)	369, 441
BbvI	GCAGC	2 cut(s)	305, 533
BccI	CCATC	1 cut(s)	428
BceAI	ACGGC	1 cut(s)	359
BcgI	CGANNNNNNTGC	6 cut(s)	52, 86, 346, 380, 510, 544
BciT130I	CCWGG	2 cut(s)	371, 488
BcoDI	GTCTC	1 cut(s)	95
BfoI	RGCGCY	3 cut(s)	126, 258, 506
BisI	GCNGC	6 cut(s)	229, 273, 294, 324, 433, 522
BlsI	GCNGC	6 cut(s)	230, 274, 295, 325, 434, 523
Bme1390I	CCNGG	2 cut(s)	371, 488
BmeT110I	CYCGRG	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	4 cut(s)	124, 250, 484, 504
BmrFI	CCNGG	2 cut(s)	371, 488
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	72
BmuI	ACTGGG	1 cut(s)	449
BpiI	GAAGAC	2 cut(s)	347, 479
BpmI	CTGGAG	2 cut(s)	170, 326
BsaAI	YACGTR	1 cut(s)	364
BsaHI	GRCGYC	2 cut(s)	123, 503
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	5 cut(s)	117, 297, 356, 486, 516
BsaWI	WCCGGW	1 cut(s)	245
BsaXI	ACNNNNNCTCC	4 cut(s)	37, 67, 241, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse118I	RCCGGY	4 cut(s)	125, 179, 245, 251
Bse1I	ACTGG	2 cut(s)	187, 455
BseBI	CCWGG	2 cut(s)	371, 488
BseDI	CCNNGG	5 cut(s)	117, 297, 356, 486, 516
BseGI	GGATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	2 cut(s)	187, 455
BseRI	GAGGAG	2 cut(s)	395, 404
BseXI	GCAGC	2 cut(s)	305, 533
BseYI	CCCAGC	1 cut(s)	237
Bsh1236I	CGCG	3 cut(s)	323, 328, 346
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	3 cut(s)	183, 228, 374
BshNI	GGYRCC	3 cut(s)	122, 248, 502
BshTI	ACCGGT	1 cut(s)	245
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	369, 441
BsiHKCI	CYCGRG	1 cut(s)	355
BsiSI	CCGG	6 cut(s)	126, 180, 246, 252, 411, 480
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	95
BsnI	GGCC	3 cut(s)	183, 228, 374
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	355
Bsp1286I	GDGCHC	2 cut(s)	369, 441
Bsp143I	GATC	1 cut(s)	348
BspACI	CCGC	8 cut(s)	129, 141, 229, 273, 314, 323, 346, 432
BspANI	GGCC	3 cut(s)	183, 228, 374
BspCNI	CTCAG	1 cut(s)	101
BspFNI	CGCG	3 cut(s)	323, 328, 346
BspLI	GGNNCC	4 cut(s)	124, 250, 484, 504
BspPI	GGATC	1 cut(s)	356
BspT107I	GGYRCC	3 cut(s)	122, 248, 502
BspTNI	GGTCTC	1 cut(s)	95
BsrFI	RCCGGY	4 cut(s)	125, 179, 245, 251
BsrI	ACTGG	2 cut(s)	187, 455
BssAI	RCCGGY	4 cut(s)	125, 179, 245, 251
BssECI	CCNNGG	5 cut(s)	117, 297, 356, 486, 516
BssMI	GATC	1 cut(s)	348
BssNI	GRCGYC	2 cut(s)	123, 503
BssT1I	CCWWGG	2 cut(s)	117, 516
Bst2UI	CCWGG	2 cut(s)	371, 488
Bst6I	CTCTTC	1 cut(s)	130
BstACI	GRCGYC	2 cut(s)	123, 503
BstBAI	YACGTR	1 cut(s)	364
BstC8I	GCNNGC	3 cut(s)	127, 181, 437
BstDEI	CTNAG	2 cut(s)	88, 165
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	41
BstFNI	CGCG	3 cut(s)	323, 328, 346
BstH2I	RGCGCY	3 cut(s)	126, 258, 506
BstHHI	GCGC	5 cut(s)	125, 243, 257, 328, 505
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	348
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 400
BstNI	CCWGG	2 cut(s)	371, 488
BstSCI	CCNGG	2 cut(s)	369, 486
BstUI	CGCG	3 cut(s)	323, 328, 346
BstV1I	GCAGC	2 cut(s)	305, 533
BstV2I	GAAGAC	2 cut(s)	347, 479
BsuRI	GGCC	3 cut(s)	183, 228, 374
BtgZI	GCGATG	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	41
Cac8I	GCNNGC	3 cut(s)	127, 181, 437
CaiI	CAGNNNCTG	1 cut(s)	10
CfoI	GCGC	5 cut(s)	125, 243, 257, 328, 505
Cfr10I	RCCGGY	4 cut(s)	125, 179, 245, 251
Cfr13I	GGNCC	1 cut(s)	226
CseI	GACGC	2 cut(s)	22, 352
Csp6I	GTAC	1 cut(s)	249
CspAI	ACCGGT	1 cut(s)	245
CviJI	RGCY	8 cut(s)	179, 183, 228, 296, 374, 394, 403, 483
CviKI_1	RGCY	8 cut(s)	179, 183, 228, 296, 374, 394, 403, 483
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	2 cut(s)	88, 165
DinI	GGCGCC	2 cut(s)	124, 504
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
EciI	GGCGGA	2 cut(s)	144, 156
Eco130I	CCWWGG	2 cut(s)	117, 516
Eco31I	GGTCTC	1 cut(s)	95
Eco72I	CACGTG	1 cut(s)	364
Eco88I	CYCGRG	1 cut(s)	355
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoRII	CCWGG	2 cut(s)	369, 486
EcoT14I	CCWWGG	2 cut(s)	117, 516
EgeI	GGCGCC	2 cut(s)	124, 504
EheI	GGCGCC	2 cut(s)	124, 504
ErhI	CCWWGG	2 cut(s)	117, 516
FaiI	YATR	1 cut(s)	544
FauI	CCCGC	1 cut(s)	307
Fnu4HI	GCNGC	6 cut(s)	229, 273, 294, 324, 433, 522
FokI	GGATG	1 cut(s)	28
Fsp4HI	GCNGC	6 cut(s)	229, 273, 294, 324, 433, 522
GlaI	GCGC	5 cut(s)	124, 242, 256, 327, 504
GluI	GCNGC	6 cut(s)	229, 273, 294, 324, 433, 522
GsaI	CCCAGC	1 cut(s)	241
GsuI	CTGGAG	2 cut(s)	170, 326
HaeII	RGCGCY	3 cut(s)	126, 258, 506
HaeIII	GGCC	3 cut(s)	183, 228, 374
HapII	CCGG	6 cut(s)	126, 180, 246, 252, 411, 480
HgaI	GACGC	2 cut(s)	22, 352
HhaI	GCGC	5 cut(s)	125, 243, 257, 328, 505
Hin1I	GRCGYC	2 cut(s)	123, 503
Hin6I	GCGC	5 cut(s)	123, 241, 255, 326, 503
HinP1I	GCGC	5 cut(s)	123, 241, 255, 326, 503
HpaII	CCGG	6 cut(s)	126, 180, 246, 252, 411, 480
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	91, 468
Hpy188III	TCNNGA	2 cut(s)	10, 442
Hpy99I	CGWCG	3 cut(s)	38, 200, 389
HpyAV	CCTTC	3 cut(s)	485, 493, 532
HpyCH4IV	ACGT	2 cut(s)	211, 363
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 400
HpyF3I	CTNAG	2 cut(s)	88, 165
HpySE526I	ACGT	2 cut(s)	211, 363
Hsp92I	GRCGYC	2 cut(s)	123, 503
HspAI	GCGC	5 cut(s)	123, 241, 255, 326, 503
KasI	GGCGCC	2 cut(s)	122, 502
KpnI	GGTACC	1 cut(s)	252
KroI	GCCGGC	2 cut(s)	125, 179
KroNI	GCCGGC	2 cut(s)	127, 181
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	6 cut(s)	262, 372, 391, 408, 444, 488
Lsp1109I	GCAGC	2 cut(s)	305, 533
LweI	GCATC	1 cut(s)	72
MaeII	ACGT	2 cut(s)	211, 363
MaeIII	GTNAC	3 cut(s)	112, 329, 415
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	6 cut(s)	144, 147, 163, 352, 481, 484
MhlI	GDGCHC	2 cut(s)	369, 441
MluCI	AATT	1 cut(s)	17
Mly113I	GGCGCC	2 cut(s)	123, 503
MreI	CGCCGGCG	1 cut(s)	125
MroNI	GCCGGC	2 cut(s)	125, 179
MspI	CCGG	6 cut(s)	126, 180, 246, 252, 411, 480
MspR9I	CCNGG	2 cut(s)	371, 488
MvaI	CCWGG	2 cut(s)	371, 488
MvnI	CGCG	3 cut(s)	323, 328, 346
MwoI	GCNNNNNNNGC	2 cut(s)	320, 400
NaeI	GCCGGC	2 cut(s)	127, 181
NarI	GGCGCC	2 cut(s)	123, 503
NdeII	GATC	1 cut(s)	348
NgoMIV	GCCGGC	2 cut(s)	125, 179
NlaIV	GGNNCC	4 cut(s)	124, 250, 484, 504
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	3 cut(s)	112, 329, 415
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PdiI	GCCGGC	2 cut(s)	127, 181
PinAI	ACCGGT	1 cut(s)	245
PkrI	GCNGC	6 cut(s)	230, 274, 295, 325, 434, 523
PluTI	GGCGCC	2 cut(s)	126, 506
PmaCI	CACGTG	1 cut(s)	364
PmlI	CACGTG	1 cut(s)	364
Ppu21I	YACGTR	1 cut(s)	364
Psp6I	CCWGG	2 cut(s)	369, 486
PspCI	CACGTG	1 cut(s)	364
PspFI	CCCAGC	1 cut(s)	237
PspGI	CCWGG	2 cut(s)	369, 486
PspN4I	GGNNCC	4 cut(s)	124, 250, 484, 504
PspPI	GGNCC	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
SatI	GCNGC	6 cut(s)	229, 273, 294, 324, 433, 522
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	371, 488
SduI	GDGCHC	2 cut(s)	369, 441
SetI	ASST	8 cut(s)	214, 270, 291, 303, 366, 396, 405, 479
SfaNI	GCATC	1 cut(s)	72
SfoI	GGCGCC	2 cut(s)	124, 504
SgrAI	CRCCGGYG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	8 cut(s)	129, 141, 229, 273, 314, 323, 346, 432
SspDI	GGCGCC	2 cut(s)	122, 502
StyD4I	CCNGG	2 cut(s)	369, 486
StyI	CCWWGG	2 cut(s)	117, 516
TaiI	ACGT	2 cut(s)	214, 366
TaqI	TCGA	2 cut(s)	36, 282
TaqII	GACCGA	1 cut(s)	188
TasI	AATT	1 cut(s)	17
TauI	GCSGC	4 cut(s)	231, 275, 326, 435
TseFI	GTSAC	3 cut(s)	112, 329, 415
TseI	GCWGC	2 cut(s)	293, 521
Tsp45I	GTSAC	3 cut(s)	112, 329, 415
XagI	CCTNNNNNAGG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.