Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0011328

Physical Location & Seq

Genomic Coordinates Forward (+)

21760511 .. 21761501

Gene Structure 991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAACCCTAACTCCTCCAAACCCCGCTGCGAGGCCCTTGAACTTTCCCTCCAAAACGATCGTTTCACTTGTAAACCCGTGAGCGAAGAAATGGTCGCCGCGATCAGCGGAGGCTTCGGTGGCAGGAAAGGCGGAGGGAGGAAGGTGACTAAGTCGTCCCGGGCTGGCCTGCAATTTCCGGTGGGTCGGATCGGCCGTTTTCTGAAAGCCGGTCGCTACGCCCAGCGCATCGGCGCCGGGGCTCCGATTTATCTGGCTGCTGTTCTCGAATACCTCGCTGCTGAGGTTCTGGAATTGGCTGGGAATGCGGCACGTGACAACAAGAAGAGTCGAATCACCCCGCGGCACGTGCAATTGGCAGTGAGGAACGACGAGGAGTTGGGAAAGCTTTTGAAAGGAGTGACCATCGCCAGCGGCGGTGTGCTTCCACATATAAACCCCGTTTTGCTTCCGAAGCCGACCTTCAACGGCGGTGATGCCAAAAAGAAGGCTGCCAAGTCTCCCAAACCCGCCAAGATCGTCGCCGATATCTCTTCCGCTCCCGCCGCTGAAATTGCTCCCAACCCGCCTGCGGCGGTTGCCGATTCAGCTTCTGATGTTGCAGAAAATGTCCCCAATTCCCCCAACGCCCCGAGGAGCCCGTCGTCTGGTGTTTCTGGTTTATCAACAACTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

226

Amino Acids

23.24

Weight (kDa)

10.0

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	47 - 122	1.6e-13	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	125 - 154	2.8e-16	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27670 AT5G59870
malus_domestica	MD04G1201800.v1.1 MD12G1215400.v1.1 MD12G1215500.v1.1
prunus_persica	Prupe.6G322000_v2.0.a1
pyrus_communis	pycom04g17800 pycom12g20130 pycom12g20140
rosa_chinensis	RchiOBHm_Chr3g0455491
rosa_laevigata	RLG00000025354
rosa_multiflora	Rmu_sc0010428.1_g000004 Rmu_sc0016199.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424210
rosa_rugosa	Rorug03G0008000 Rorug03G0008100 Rorug03G0008200
rosa_samantha	Rh3CG068400 Rh3DG070000
rosa_wichuraiana	Rw3G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	154
AccB1I	GGYRCC	1 cut(s)	233
AccBSI	CCGCTC	1 cut(s)	539
AccII	CGCG	2 cut(s)	101, 343
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	193
AcvI	CACGTG	2 cut(s)	314, 349
AcyI	GRCGYC	1 cut(s)	234
AfiI	CCNNNNNNNGG	3 cut(s)	31, 571, 647
AgsI	TTSAA	3 cut(s)	41, 394, 466
AloI	GAACNNNNNNTCC	3 cut(s)	28, 33, 65
AluBI	AGCT	2 cut(s)	388, 590
AluI	AGCT	2 cut(s)	388, 590
Alw26I	GTCTC	1 cut(s)	504
AlwI	GGATC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	593
Ama87I	CYCGRG	2 cut(s)	159, 631
AoxI	GGCC	3 cut(s)	33, 166, 193
ApeKI	GCWGC	4 cut(s)	27, 257, 278, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
AspLEI	GCGC	2 cut(s)	228, 236
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	3 cut(s)	160, 161, 238
AsuHPI	GGTGA	3 cut(s)	157, 328, 485
AvaI	CYCGRG	2 cut(s)	159, 631
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	2 cut(s)	244, 641
BbrPI	CACGTG	2 cut(s)	314, 349
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	4 cut(s)	14, 244, 265, 478
BccI	CCATC	1 cut(s)	413
BceAI	ACGGC	2 cut(s)	180, 484
BcnI	CCSGG	3 cut(s)	160, 161, 238
BcoDI	GTCTC	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	237
Bme1390I	CCNGG	3 cut(s)	160, 161, 238
BmeT110I	CYCGRG	2 cut(s)	159, 631
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	3 cut(s)	235, 243, 638
BmrFI	CCNGG	3 cut(s)	160, 161, 238
BmsI	GCATC	2 cut(s)	237, 466
Bpu10I	CCTNAGC	1 cut(s)	282
BpuMI	CCSGG	3 cut(s)	160, 161, 238
BsaAI	YACGTR	2 cut(s)	314, 349
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	4 cut(s)	159, 237, 341, 632
BsaWI	WCCGGW	1 cut(s)	178
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 571, 647
Bse118I	RCCGGY	1 cut(s)	209
BseDI	CCNNGG	4 cut(s)	159, 237, 341, 632
BseLI	CCNNNNNNNGG	3 cut(s)	31, 571, 647
BseMII	CTCAG	1 cut(s)	273
BseRI	GAGGAG	3 cut(s)	4, 389, 649
BseX3I	CGGCCG	1 cut(s)	193
BseXI	GCAGC	4 cut(s)	14, 244, 265, 478
BseYI	CCCAGC	2 cut(s)	222, 299
Bsh1236I	CGCG	2 cut(s)	101, 343
Bsh1285I	CGRYCG	3 cut(s)	61, 196, 214
BshFI	GGCC	3 cut(s)	35, 168, 195
BshNI	GGYRCC	1 cut(s)	233
BsiEI	CGRYCG	3 cut(s)	61, 196, 214
BsiHKCI	CYCGRG	2 cut(s)	159, 631
BsiSI	CCGG	4 cut(s)	160, 179, 210, 237
BslFI	GGGAC	2 cut(s)	142, 596
BslI	CCNNNNNNNGG	3 cut(s)	31, 571, 647
BsmAI	GTCTC	1 cut(s)	504
BsmFI	GGGAC	2 cut(s)	142, 596
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	3 cut(s)	35, 168, 195
BsoBI	CYCGRG	2 cut(s)	159, 631
Bsp1286I	GDGCHC	2 cut(s)	244, 641
Bsp143I	GATC	4 cut(s)	58, 102, 189, 516
BspANI	GGCC	3 cut(s)	35, 168, 195
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	2 cut(s)	101, 343
BspLI	GGNNCC	3 cut(s)	235, 243, 638
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	233
BsrBI	CCGCTC	1 cut(s)	539
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	4 cut(s)	159, 237, 341, 632
BssMI	GATC	4 cut(s)	58, 102, 189, 516
BssNI	GRCGYC	1 cut(s)	234
Bst6I	CTCTTC	2 cut(s)	320, 538
BstACI	GRCGYC	1 cut(s)	234
BstBAI	YACGTR	2 cut(s)	314, 349
BstC8I	GCNNGC	4 cut(s)	166, 170, 412, 570
BstDEI	CTNAG	2 cut(s)	150, 282
BstDSI	CCRYGG	1 cut(s)	341
BstFNI	CGCG	2 cut(s)	101, 343
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	2 cut(s)	228, 236
BstKTI	GATC	4 cut(s)	61, 105, 192, 519
BstMAI	GTCTC	1 cut(s)	504
BstMBI	GATC	4 cut(s)	58, 102, 189, 516
BstMCI	CGRYCG	3 cut(s)	61, 196, 214
BstMWI	GCNNNNNNNGC	9 cut(s)	120, 129, 305, 349, 454, 545, 554, 578, 587
BstSCI	CCNGG	3 cut(s)	158, 159, 236
BstUI	CGCG	2 cut(s)	101, 343
BstV1I	GCAGC	4 cut(s)	14, 244, 265, 478
BstZI	CGGCCG	1 cut(s)	193
BsuRI	GGCC	3 cut(s)	35, 168, 195
BtgI	CCRYGG	1 cut(s)	341
BtgZI	GCGATG	1 cut(s)	391
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	4 cut(s)	166, 170, 412, 570
CaiI	CAGNNNCTG	1 cut(s)	593
CfoI	GCGC	2 cut(s)	228, 236
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	34
Cfr42I	CCGCGG	1 cut(s)	344
Cfr9I	CCCGGG	1 cut(s)	159
CviAII	CATG	1 cut(s)	675
DdeI	CTNAG	2 cut(s)	150, 282
DinI	GGCGCC	1 cut(s)	235
DpnI	GATC	4 cut(s)	60, 104, 191, 518
DpnII	GATC	4 cut(s)	58, 102, 189, 516
DrdI	GACNNNNNNGTC	1 cut(s)	154
DseDI	GACNNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	193
EagI	CGGCCG	1 cut(s)	193
Eam1104I	CTCTTC	2 cut(s)	320, 538
EarI	CTCTTC	2 cut(s)	320, 538
EciI	GGCGGA	1 cut(s)	147
EclXI	CGGCCG	1 cut(s)	193
Eco24I	GRGCYC	2 cut(s)	244, 641
Eco32I	GATATC	1 cut(s)	529
Eco52I	CGGCCG	1 cut(s)	193
Eco72I	CACGTG	2 cut(s)	314, 349
Eco88I	CYCGRG	2 cut(s)	159, 631
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRV	GATATC	1 cut(s)	529
EcoT38I	GRGCYC	2 cut(s)	244, 641
EgeI	GGCGCC	1 cut(s)	235
EheI	GGCGCC	1 cut(s)	235
FaeI	CATG	1 cut(s)	678
FaiI	YATR	3 cut(s)	432, 434, 676
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	2 cut(s)	142, 596
FatI	CATG	1 cut(s)	674
FauI	CCCGC	5 cut(s)	32, 348, 517, 550, 573
FriOI	GRGCYC	2 cut(s)	244, 641
GlaI	GCGC	2 cut(s)	227, 235
GsaI	CCCAGC	2 cut(s)	226, 303
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	3 cut(s)	35, 168, 195
HapII	CCGG	4 cut(s)	160, 179, 210, 237
HhaI	GCGC	2 cut(s)	228, 236
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	678
Hin6I	GCGC	2 cut(s)	226, 234
HinP1I	GCGC	2 cut(s)	226, 234
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	3 cut(s)	328, 333, 584
HpaII	CCGG	4 cut(s)	160, 179, 210, 237
HphI	GGTGA	3 cut(s)	157, 328, 485
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	5 cut(s)	189, 204, 246, 453, 595
Hpy188III	TCNNGA	2 cut(s)	266, 290
Hpy8I	GTNNAC	1 cut(s)	74
Hpy99I	CGWCG	3 cut(s)	374, 524, 646
HpyAV	CCTTC	3 cut(s)	136, 472, 481
HpyCH4IV	ACGT	2 cut(s)	313, 348
HpyCH4V	TGCA	3 cut(s)	172, 352, 602
HpyF10VI	GCNNNNNNNGC	9 cut(s)	120, 129, 305, 349, 454, 545, 554, 578, 587
HpyF3I	CTNAG	2 cut(s)	150, 282
HpySE526I	ACGT	2 cut(s)	313, 348
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	678
HspAI	GCGC	2 cut(s)	226, 234
KasI	GGCGCC	1 cut(s)	233
KspI	CCGCGG	1 cut(s)	344
Kzo9I	GATC	4 cut(s)	58, 102, 189, 516
LmnI	GCTCC	4 cut(s)	247, 544, 562, 636
Lsp1109I	GCAGC	4 cut(s)	14, 244, 265, 478
LweI	GCATC	2 cut(s)	237, 466
MaeII	ACGT	2 cut(s)	313, 348
MaeIII	GTNAC	3 cut(s)	145, 314, 400
MalI	GATC	4 cut(s)	60, 104, 191, 518
MbiI	CCGCTC	1 cut(s)	539
MboI	GATC	4 cut(s)	58, 102, 189, 516
MboII	GAAGA	3 cut(s)	98, 337, 525
MfeI	CAATTG	1 cut(s)	353
MhlI	GDGCHC	2 cut(s)	244, 641
MluCI	AATT	5 cut(s)	173, 293, 353, 552, 616
Mly113I	GGCGCC	1 cut(s)	234
MlyI	GAGTC	1 cut(s)	337
MmeI	TCCRAC	1 cut(s)	167
MspA1I	CMGCKG	5 cut(s)	27, 108, 343, 414, 548
MspI	CCGG	4 cut(s)	160, 179, 210, 237
MspR9I	CCNGG	3 cut(s)	160, 161, 238
MunI	CAATTG	1 cut(s)	353
Mva1269I	GAATGC	1 cut(s)	310
MvnI	CGCG	2 cut(s)	101, 343
MwoI	GCNNNNNNNGC	9 cut(s)	120, 129, 305, 349, 454, 545, 554, 578, 587
NarI	GGCGCC	1 cut(s)	234
NciI	CCSGG	3 cut(s)	160, 161, 238
NdeII	GATC	4 cut(s)	58, 102, 189, 516
NlaIII	CATG	1 cut(s)	678
NlaIV	GGNNCC	3 cut(s)	235, 243, 638
NmuCI	GTSAC	3 cut(s)	145, 314, 400
PcsI	WCGNNNNNNNCGW	1 cut(s)	193
PctI	GAATGC	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	333, 584
PflFI	GACNNNGTC	1 cut(s)	151
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	1 cut(s)	336
PluTI	GGCGCC	1 cut(s)	237
PmaCI	CACGTG	2 cut(s)	314, 349
PmlI	CACGTG	2 cut(s)	314, 349
PpsI	GAGTC	1 cut(s)	336
Ppu21I	YACGTR	2 cut(s)	314, 349
PspCI	CACGTG	2 cut(s)	314, 349
PspFI	CCCAGC	2 cut(s)	222, 299
PspN4I	GGNNCC	3 cut(s)	235, 243, 638
PspPI	GGNCC	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	593
PsyI	GACNNNGTC	1 cut(s)	151
PvuI	CGATCG	1 cut(s)	61
SacII	CCGCGG	1 cut(s)	344
Sau3AI	GATC	4 cut(s)	58, 102, 189, 516
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	3 cut(s)	160, 161, 238
SduI	GDGCHC	2 cut(s)	244, 641
SetI	ASST	8 cut(s)	147, 276, 288, 316, 351, 390, 464, 592
SfaNI	GCATC	2 cut(s)	237, 466
SfoI	GGCGCC	1 cut(s)	235
Sfr303I	CCGCGG	1 cut(s)	344
SgrBI	CCGCGG	1 cut(s)	344
SmaI	CCCGGG	1 cut(s)	161
Sse9I	AATT	5 cut(s)	173, 293, 353, 552, 616
SspDI	GGCGCC	1 cut(s)	233
StyD4I	CCNGG	3 cut(s)	158, 159, 236
TaiI	ACGT	2 cut(s)	316, 351
TaqI	TCGA	2 cut(s)	267, 331
TasI	AATT	5 cut(s)	173, 293, 353, 552, 616
TauI	GCSGC	6 cut(s)	101, 311, 346, 417, 548, 575
TfiI	GAWTC	2 cut(s)	333, 584
TscAI	CASTG	1 cut(s)	366
TseFI	GTSAC	3 cut(s)	145, 314, 400
TseI	GCWGC	4 cut(s)	27, 257, 278, 491
Tsp45I	GTSAC	3 cut(s)	145, 314, 400
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	159
TspRI	CASTG	1 cut(s)	366
Tth111I	GACNNNGTC	1 cut(s)	151
XmaI	CCCGGG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.