pycom12g20800

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0012048
Physical Location & Seq
Reverse (-)
22155269 .. 22155886
618 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 618 bp
ATGCTTGCAATTCGTTCATACCATTCCATCATCCTGTTGTTTTGTAATCCTCTATGGTTTGTAATCCTCTTGGCAACCTCCACTCTTGCACTTCTTCATTATGCAGTGGAAAAAGAGCCCAAAACTAAGCAACTACCTGTATTGCTTATAGCATTTGTTATGAGCGTCTTTTGTATATCCACCACTGCTGGAGAATTGCTGAATTGCCATGCTGCTCTCGAAACACGTCTGGAGTTGCCACCTGCACTTCTGGTGCTCACAGTTCTTGCACGGGGGAATTTGGTGGGGGATCTTGTTGCTGATGTCGCCGTTGCCAAGGCAGACCACCCTGCAATGGCCATGGCCGGGTGTTTTGCTGGGCCAATGTTTAACATGCTTGTTGGACTTGGGACAGCTTTGGTTATACAGACATACGATGTTTATCCCGAGGCGTACGAGCTTCAGTTCCACGTGGGTATAGTGATTGCATTTGTTTTCTTGCTTCTGAGCCTGATGGGGTCTCAATTGGTGATTACATGGTGCAGATTCCGGGTGCCTAGGTTCTGGGGATTCTGCCTAGTTGGTCTCTATGTTATTTTTATGGCAGTTAGTTTGGTAATCGCCAAGTTTTCAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0003712 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0019219 GO:0019222 GO:0022414 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0034220 GO:0034399 GO:0035725 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046873 GO:0048518 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0055085 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071804 GO:0071805 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098655 GO:0098660 GO:0098662 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

206

Amino Acids

22.47

Weight (kDa)

6.94

Isoelectric Point (pI)

30.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 48 - 198 2.4e-26 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08960
fragaria_vesca FvH4_6g05530 FvH4_6g05530 FvH4_6g05530
malus_domestica MD04G1207600.v1.1 MD12G1221900.v1.1
prunus_persica Prupe.6G328600_v2.0.a1
pyrus_communis pycom04g18380 pycom12g20800
rosa_chinensis RchiOBHm_Chr3g0454301
rosa_laevigata RLG00000025464
rosa_multiflora Rmu_sc0001340.1_g000003
rosa_roxburghii Rroxscaffold_165G00437120
rosa_rugosa Rorug02G0654100
rosa_samantha Rh3AG058000 Rh3BG059700 Rh3CG058900 Rh3DG060200
rosa_wichuraiana Rw3G004440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 250
Acc36I ACCTGC 1 cut(s) 250
AccB1I GGYRCC 1 cut(s) 532
AclWI GGATC 1 cut(s) 297
AcoI YGGCCR 2 cut(s) 336, 342
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 425
AcvI CACGTG 1 cut(s) 451
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 334, 345
AflIII ACRYGT 1 cut(s) 224
AjiI CACGTC 1 cut(s) 227
AluBI AGCT 2 cut(s) 395, 439
AluI AGCT 2 cut(s) 395, 439
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 2 cut(s) 504, 569
AlwI GGATC 1 cut(s) 297
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 3 cut(s) 336, 342, 359
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 277
AspA2I CCTAGG 1 cut(s) 536
AspS9I GGNCC 1 cut(s) 359
AsuC2I CCSGG 2 cut(s) 346, 530
AsuHPI GGTGA 1 cut(s) 520
AvaI CYCGRG 1 cut(s) 425
AvrII CCTAGG 1 cut(s) 536
BalI TGGCCA 1 cut(s) 338
BanI GGYRCC 1 cut(s) 532
BanII GRGCYC 1 cut(s) 120
BbrPI CACGTG 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 199
BccI CCATC 2 cut(s) 35, 487
BceAI ACGGC 1 cut(s) 293
BcnI CCSGG 2 cut(s) 346, 530
BcoDI GTCTC 2 cut(s) 504, 569
BfaI CTAG 2 cut(s) 537, 557
BfuAI ACCTGC 1 cut(s) 250
BisI GCNGC 1 cut(s) 213
BlnI CCTAGG 1 cut(s) 536
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 2 cut(s) 346, 530
BmeT110I CYCGRG 1 cut(s) 425
BmgBI CACGTC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 1 cut(s) 534
BmrFI CCNGG 2 cut(s) 346, 530
BpmI CTGGAG 2 cut(s) 210, 251
BpuMI CCSGG 2 cut(s) 346, 530
BsaAI YACGTR 1 cut(s) 451
BsaBI GATNNNNATC 1 cut(s) 420
BsaI GGTCTC 2 cut(s) 504, 569
BsaJI CCNNGG 4 cut(s) 315, 339, 426, 536
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 345
Bse3DI GCAATG 1 cut(s) 339
Bse8I GATNNNNATC 1 cut(s) 420
BseDI CCNNGG 4 cut(s) 315, 339, 426, 536
BseGI GGATG 1 cut(s) 30
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 2 cut(s) 334, 345
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 476
BseXI GCAGC 1 cut(s) 199
BseYI CCCAGC 1 cut(s) 356
BsgI GTGCAG 2 cut(s) 228, 541
BshFI GGCC 3 cut(s) 338, 344, 361
BshNI GGYRCC 1 cut(s) 532
BsiHKAI GWGCWC 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 2 cut(s) 345, 529
BsiWI CGTACG 1 cut(s) 432
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 2 cut(s) 334, 345
BsmAI GTCTC 2 cut(s) 504, 569
BsmFI GGGAC 1 cut(s) 403
BsnI GGCC 3 cut(s) 338, 344, 361
Bso31I GGTCTC 2 cut(s) 504, 569
BsoBI CYCGRG 1 cut(s) 425
Bsp1286I GDGCHC 2 cut(s) 120, 258
Bsp143I GATC 1 cut(s) 289
Bsp19I CCATGG 1 cut(s) 339
BspANI GGCC 3 cut(s) 338, 344, 361
BspCNI CTCAG 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 534
BspMI ACCTGC 1 cut(s) 250
BspPI GGATC 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 532
BspTNI GGTCTC 2 cut(s) 504, 569
BsrDI GCAATG 1 cut(s) 339
BssECI CCNNGG 4 cut(s) 315, 339, 426, 536
BssMI GATC 1 cut(s) 289
BssT1I CCWWGG 3 cut(s) 315, 339, 536
Bst4CI ACNGT 1 cut(s) 262
BstBAI YACGTR 1 cut(s) 451
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 126, 485
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 30
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 2 cut(s) 504, 569
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 2 cut(s) 344, 528
BstV1I GCAGC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 3 cut(s) 338, 344, 361
BtgI CCRYGG 1 cut(s) 339
BtrI CACGTC 1 cut(s) 227
BtsCI GGATG 1 cut(s) 30
BtsI GCAGTG 2 cut(s) 111, 183
BtsIMutI CAGTG 2 cut(s) 111, 183
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 359
CseI GACGC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 433
CviAII CATG 4 cut(s) 209, 340, 373, 516
CviJI RGCY 7 cut(s) 118, 338, 344, 361, 395, 439, 489
CviKI_1 RGCY 7 cut(s) 118, 338, 344, 361, 395, 439, 489
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 2 cut(s) 126, 485
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
EaeI YGGCCR 2 cut(s) 336, 342
Eco130I CCWWGG 3 cut(s) 315, 339, 536
Eco24I GRGCYC 1 cut(s) 120
Eco31I GGTCTC 2 cut(s) 504, 569
Eco57I CTGAAG 1 cut(s) 425
Eco72I CACGTG 1 cut(s) 451
Eco88I CYCGRG 1 cut(s) 425
EcoT14I CCWWGG 3 cut(s) 315, 339, 536
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 3 cut(s) 315, 339, 536
FaeI CATG 4 cut(s) 212, 343, 376, 519
FaqI GGGAC 1 cut(s) 403
FatI CATG 4 cut(s) 208, 339, 372, 515
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 2 cut(s) 537, 557
GluI GCNGC 1 cut(s) 213
GsaI CCCAGC 1 cut(s) 360
GsuI CTGGAG 2 cut(s) 210, 251
HaeIII GGCC 3 cut(s) 338, 344, 361
HapII CCGG 2 cut(s) 345, 529
HgaI GACGC 1 cut(s) 154
Hin1II CATG 4 cut(s) 212, 343, 376, 519
HinfI GANTC 2 cut(s) 525, 549
HpaII CCGG 2 cut(s) 345, 529
HphI GGTGA 1 cut(s) 520
Hpy188I TCNGA 1 cut(s) 486
Hpy188III TCNNGA 3 cut(s) 218, 230, 425
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4IV ACGT 2 cut(s) 226, 450
HpyCH4V TGCA 8 cut(s) 8, 89, 104, 245, 269, 332, 467, 522
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 2 cut(s) 126, 485
HpySE526I ACGT 2 cut(s) 226, 450
Hsp92II CATG 4 cut(s) 212, 343, 376, 519
Kzo9I GATC 1 cut(s) 289
Lsp1109I GCAGC 1 cut(s) 199
MaeI CTAG 2 cut(s) 537, 557
MaeII ACGT 2 cut(s) 226, 450
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 1 cut(s) 86
MfeI CAATTG 1 cut(s) 503
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 2 cut(s) 120, 258
MlsI TGGCCA 1 cut(s) 338
MluCI AATT 5 cut(s) 9, 194, 202, 277, 503
MluNI TGGCCA 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 4 cut(s) 60, 77, 88, 421
Mox20I TGGCCA 1 cut(s) 338
MscI TGGCCA 1 cut(s) 338
MseI TTAA 1 cut(s) 369
Msp20I TGGCCA 1 cut(s) 338
MspI CCGG 2 cut(s) 345, 529
MspR9I CCNGG 2 cut(s) 346, 530
MunI CAATTG 1 cut(s) 503
MwoI GCNNNNNNNGC 1 cut(s) 305
NciI CCSGG 2 cut(s) 346, 530
NcoI CCATGG 1 cut(s) 339
NdeII GATC 1 cut(s) 289
NlaIII CATG 4 cut(s) 212, 343, 376, 519
NlaIV GGNNCC 1 cut(s) 534
NspI RCATGY 1 cut(s) 376
PaqCI CACCTGC 1 cut(s) 250
PfeI GAWTC 2 cut(s) 525, 549
Pfl23II CGTACG 1 cut(s) 432
PkrI GCNGC 1 cut(s) 214
PmaCI CACGTG 1 cut(s) 451
PmlI CACGTG 1 cut(s) 451
Ppu21I YACGTR 1 cut(s) 451
PspCI CACGTG 1 cut(s) 451
PspFI CCCAGC 1 cut(s) 356
PspLI CGTACG 1 cut(s) 432
PspN4I GGNNCC 1 cut(s) 534
PspPI GGNCC 1 cut(s) 359
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 1 cut(s) 359
ScrFI CCNGG 2 cut(s) 346, 530
SduI GDGCHC 2 cut(s) 120, 258
SetI ASST 8 cut(s) 80, 139, 229, 244, 397, 441, 453, 542
Sse9I AATT 5 cut(s) 9, 194, 202, 277, 503
SspMI CTAG 2 cut(s) 537, 557
StyD4I CCNGG 2 cut(s) 344, 528
StyI CCWWGG 3 cut(s) 315, 339, 536
TaaI ACNGT 1 cut(s) 262
TaiI ACGT 2 cut(s) 229, 453
TaqI TCGA 1 cut(s) 219
TasI AATT 5 cut(s) 9, 194, 202, 277, 503
TfiI GAWTC 2 cut(s) 525, 549
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 2 cut(s) 111, 190
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 6, 86
TspRI CASTG 2 cut(s) 111, 190
XapI RAATTY 1 cut(s) 277
XceI RCATGY 1 cut(s) 376
XmaJI CCTAGG 1 cut(s) 536
XspI CTAG 2 cut(s) 537, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.