pycom12g21940

PITH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0013361
Physical Location & Seq
Forward (+)
23013299 .. 23016089
2791 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 699 bp
ATGATTTTTTCACGGTGCCGTTTCCACGCTACTACCCACCATATTCCTTCCTCTCTTCGGCTTCGGATTCTTCAACTAGACCAATATATAGCTTTCGTCCTCCAAACTCCATCTCTCTCGTTTCCGTCCTCCAAAATCCAACTCAAATTCTTAATCTTGTCAGCCATGTCTGCGGAATCAGCCAGTGCAATCCAAAAAAGCCAAGTTGATTTATTGGACTTCATAGATTGGTCTGGTGTTGAATGCCTCAACCAAAGCACTTCTCACTCTGTTGCTAACGCTCTCAAGCAGGGTTATAGAGAAGATGATGGTTTGAATCTGGAGAGCGATGCGGATGAGCAGCTTTTGATTTACATACCTTTTCTTCAAGTCGTTAAACTGCACTCTGTCGTCATCAAAGGGCCTGAAGACGAAGGTCCTAAGACCGTGAAACTTTTTTCAAACAAGGAGCACATGGGATTCAGCAATGTCAATGACTACCCAGCAAGTGACACCATTGATTTATCCCCTGATAATCTAAAGGGAAAACCAGTTGTTTTGAAGTATGTCAAGTTTCAAAATGTTCGCAGCTTGACTGTTTTTATCGAGGACAATCAATCCGGCTTGGAAGTCACAAAAGTTCAAAAGATTGTTCTTTGTGGAACGACGGTGGAAACGACAGACATGAAGGGCTTGAAGAAAATTGAGGACGGACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PITH

Protein Analysis

233

Amino Acids

25.91

Weight (kDa)

5.97

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PITH PF06201 63 - 228 2.7e-53 PITH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04780
fragaria_vesca FvH4_6g03140
malus_domestica MD04G1222600.v1.1 MD12G1238700.v1.1
prunus_persica Prupe.6G341600_v2.0.a1
pyrus_communis pycom04g19690 pycom12g21940
rosa_chinensis RchiOBHm_Chr3g0451391
rosa_laevigata RLG00000025663
rosa_multiflora Rmu_sc0021369.1_g000001
rosa_roxburghii Rroxscaffold_164G00436530 Rroxscaffold_6G00428810
rosa_rugosa Rorug02G0633500
rosa_samantha Rh3AG036500 Rh3BG037100 Rh3CG035700 Rh3DG036600
rosa_wichuraiana Rw3G002690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 15
AciI CCGC 2 cut(s) 173, 332
AcsI RAATTY 1 cut(s) 146
AcuI CTGAAG 1 cut(s) 426
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 9 cut(s) 74, 242, 316, 368, 441, 541, 557, 623, 676
AluBI AGCT 3 cut(s) 92, 343, 570
AluI AGCT 3 cut(s) 92, 343, 570
Alw21I GWGCWC 1 cut(s) 453
AoxI GGCC 1 cut(s) 401
ApeKI GCWGC 2 cut(s) 340, 567
ApoI RAATTY 1 cut(s) 146
AspS9I GGNCC 2 cut(s) 401, 416
AvaII GGWCC 1 cut(s) 416
BanI GGYRCC 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 2 cut(s) 352, 579
BccI CCATC 2 cut(s) 118, 302
BceAI ACGGC 1 cut(s) 3
BfaI CTAG 1 cut(s) 77
BisI GCNGC 2 cut(s) 341, 568
BlsI GCNGC 2 cut(s) 342, 569
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 2 cut(s) 401, 416
BmiI GGNNCC 1 cut(s) 17
BmsI GCATC 1 cut(s) 319
BoxI GACNNNNGTC 1 cut(s) 414
BpiI GAAGAC 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 269
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse1I ACTGG 2 cut(s) 183, 530
Bse3DI GCAATG 1 cut(s) 472
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMI GCAATG 1 cut(s) 472
BseNI ACTGG 2 cut(s) 183, 530
BseXI GCAGC 2 cut(s) 352, 579
BseYI CCCAGC 1 cut(s) 481
BsgI GTGCAG 1 cut(s) 365
BshFI GGCC 1 cut(s) 403
BshNI GGYRCC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 453
BsiSI CCGG 1 cut(s) 600
BslI CCNNNNNNNGG 1 cut(s) 57
BsmI GAATGC 1 cut(s) 248
BsnI GGCC 1 cut(s) 403
Bsp1286I GDGCHC 1 cut(s) 453
BspACI CCGC 2 cut(s) 173, 332
BspANI GGCC 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 17
BspT107I GGYRCC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 472
BsrI ACTGG 2 cut(s) 183, 530
Bst4CI ACNGT 4 cut(s) 15, 427, 577, 649
Bst6I CTCTTC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 420
BstF5I GGATG 1 cut(s) 340
BstMWI GCNNNNNNNGC 2 cut(s) 170, 179
BstPAI GACNNNNGTC 1 cut(s) 414
BstV1I GCAGC 2 cut(s) 352, 579
BstV2I GAAGAC 1 cut(s) 414
BsuRI GGCC 1 cut(s) 403
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 2 cut(s) 190, 694
Cfr13I GGNCC 2 cut(s) 401, 416
CviAII CATG 3 cut(s) 166, 454, 664
DdeI CTNAG 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 416
Eco57I CTGAAG 1 cut(s) 426
EcoO109I RGGNCCY 2 cut(s) 401, 416
FaeI CATG 3 cut(s) 169, 457, 667
FatI CATG 3 cut(s) 165, 453, 663
Fnu4HI GCNGC 2 cut(s) 341, 568
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 2 cut(s) 341, 568
FspBI CTAG 1 cut(s) 77
GluI GCNGC 2 cut(s) 341, 568
GsaI CCCAGC 1 cut(s) 485
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 1 cut(s) 403
HapII CCGG 1 cut(s) 600
Hin1II CATG 3 cut(s) 169, 457, 667
HinfI GANTC 4 cut(s) 67, 176, 316, 459
HpaII CCGG 1 cut(s) 600
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 320
Hpy99I CGWCG 1 cut(s) 649
HpyAV CCTTC 3 cut(s) 57, 407, 661
HpyCH4III ACNGT 4 cut(s) 15, 427, 577, 649
HpyCH4V TGCA 2 cut(s) 188, 382
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 179
HpyF3I CTNAG 1 cut(s) 420
Hsp92II CATG 3 cut(s) 169, 457, 667
LmnI GCTCC 1 cut(s) 448
LpnPI CCDG 9 cut(s) 196, 219, 275, 305, 417, 495, 522, 543, 613
Lsp1109I GCAGC 2 cut(s) 352, 579
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 77
MaeIII GTNAC 2 cut(s) 488, 610
MboII GAAGA 6 cut(s) 47, 62, 314, 356, 419, 688
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 2 cut(s) 146, 681
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 6 cut(s) 61, 110, 139, 257, 580, 679
MseI TTAA 2 cut(s) 152, 375
MspI CCGG 1 cut(s) 600
Mva1269I GAATGC 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 170, 179
NlaIII CATG 3 cut(s) 169, 457, 667
NlaIV GGNNCC 1 cut(s) 17
NmuCI GTSAC 2 cut(s) 488, 610
PcsI WCGNNNNNNNCGW 1 cut(s) 653
PctI GAATGC 1 cut(s) 248
PfeI GAWTC 4 cut(s) 67, 176, 316, 459
PkrI GCNGC 2 cut(s) 342, 569
PpuMI RGGWCCY 1 cut(s) 416
PshAI GACNNNNGTC 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 416
PspFI CCCAGC 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 17
PspPI GGNCC 2 cut(s) 401, 416
PspPPI RGGWCCY 1 cut(s) 416
SaqAI TTAA 2 cut(s) 152, 375
SatI GCNGC 2 cut(s) 341, 568
Sau96I GGNCC 2 cut(s) 401, 416
SduI GDGCHC 1 cut(s) 453
SetI ASST 5 cut(s) 94, 345, 361, 418, 572
SfaNI GCATC 1 cut(s) 319
SinI GGWCC 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 2 cut(s) 146, 681
SsiI CCGC 2 cut(s) 173, 332
SspMI CTAG 1 cut(s) 77
TaaI ACNGT 4 cut(s) 15, 427, 577, 649
TaqI TCGA 1 cut(s) 585
TasI AATT 2 cut(s) 146, 681
TfiI GAWTC 4 cut(s) 67, 176, 316, 459
Tru1I TTAA 2 cut(s) 152, 375
Tru9I TTAA 2 cut(s) 152, 375
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 2 cut(s) 488, 610
TseI GCWGC 2 cut(s) 340, 567
Tsp45I GTSAC 2 cut(s) 488, 610
TspDTI ATGAA 2 cut(s) 211, 680
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 1 cut(s) 146
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.