Transcriptional regulator
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08600 AT1G08600 AT1G08600 AT1G08600 |
| fragaria_vesca | FvH4_6g01581 |
| malus_domestica | MD00G1149200.v1.1 MD04G1232200.v1.1 |
| prunus_persica | Prupe.6G351600_v2.0.a1 Prupe.6G351600_v2.0.a1 |
| pyrus_communis | pycom04g20560 pycom12g22990 |
| rosa_chinensis | RchiOBHm_Chr3g0449401 |
| rosa_laevigata | RLG00000025834 |
| rosa_multiflora | Rmu_ssc0000423.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00427360 |
| rosa_rugosa | Rorug02G0620400 |
| rosa_samantha | Rh3AG018100 Rh3BG018400 Rh3CG017300 Rh3DG018800 |
| rosa_wichuraiana | Rw3G001450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 6 cut(s) | 459, 2958, 3132, 3237, 3515, 3702 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1666 |
| AatII | GACGTC | 1 cut(s) | 1670 |
| AccB1I | GGYRCC | 2 cut(s) | 755, 1952 |
| AccI | GTMKAC | 1 cut(s) | 4062 |
| AccII | CGCG | 2 cut(s) | 3567, 4302 |
| AciI | CCGC | 5 cut(s) | 341, 2247, 4093, 4213, 4300 |
| AclWI | GGATC | 8 cut(s) | 538, 884, 939, 1472, 1485, 1808, 3038, 3541 |
| AcoI | YGGCCR | 3 cut(s) | 795, 3637, 4297 |
| AcuI | CTGAAG | 7 cut(s) | 519, 962, 1439, 1983, 2298, 2609, 3593 |
| AcyI | GRCGYC | 3 cut(s) | 1667, 1953, 2287 |
| AfaI | GTAC | 8 cut(s) | 129, 802, 1564, 1890, 2210, 3267, 3425, 3762 |
| AfeI | AGCGCT | 2 cut(s) | 1871, 1960 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 137, 561, 1623, 1935, 2901, 3383 |
| AflIII | ACRYGT | 1 cut(s) | 3892 |
| AhlI | ACTAGT | 2 cut(s) | 661, 1139 |
| AjnI | CCWGG | 7 cut(s) | 838, 2552, 2997, 3025, 3172, 3726, 4052 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2664, 2696, 3933, 3965 |
| AleI | CACNNNNGTG | 1 cut(s) | 2264 |
| Alw21I | GWGCWC | 4 cut(s) | 409, 1922, 4223, 4323 |
| Alw44I | GTGCAC | 1 cut(s) | 4219 |
| AlwI | GGATC | 8 cut(s) | 538, 884, 939, 1472, 1485, 1808, 3038, 3541 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 908, 1351 |
| Aor51HI | AGCGCT | 2 cut(s) | 1871, 1960 |
| ApaLI | GTGCAC | 1 cut(s) | 4219 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4136, 4168 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2676, 2708 |
| AspLEI | GCGC | 3 cut(s) | 1872, 1955, 1961 |
| AspS9I | GGNCC | 8 cut(s) | 301, 432, 1288, 1525, 2173, 2507, 2533, 3724 |
| AsuHPI | GGTGA | 9 cut(s) | 899, 1147, 1435, 2030, 2251, 2610, 3514, 3821, 3881 |
| AsuII | TTCGAA | 1 cut(s) | 1795 |
| AvaII | GGWCC | 3 cut(s) | 1288, 1525, 2507 |
| BaeGI | GKGCMC | 2 cut(s) | 4223, 4262 |
| BalI | TGGCCA | 2 cut(s) | 797, 3639 |
| BamHI | GGATCC | 1 cut(s) | 1477 |
| BanI | GGYRCC | 2 cut(s) | 755, 1952 |
| BanII | GRGCYC | 2 cut(s) | 1922, 3452 |
| BauI | CACGAG | 1 cut(s) | 14 |
| BbsI | GAAGAC | 2 cut(s) | 1328, 1643 |
| Bbv12I | GWGCWC | 4 cut(s) | 409, 1922, 4223, 4323 |
| BbvCI | CCTCAGC | 1 cut(s) | 696 |
| BceAI | ACGGC | 1 cut(s) | 3065 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1775, 1809 |
| BciT130I | CCWGG | 7 cut(s) | 840, 2554, 2999, 3027, 3174, 3728, 4054 |
| BciVI | GTATCC | 2 cut(s) | 346, 510 |
| BcuI | ACTAGT | 2 cut(s) | 661, 1139 |
| BfmI | CTRYAG | 3 cut(s) | 231, 650, 2478 |
| BfoI | RGCGCY | 3 cut(s) | 1873, 1956, 1962 |
| BfuI | GTATCC | 2 cut(s) | 346, 510 |
| BlpI | GCTNAGC | 3 cut(s) | 378, 1921, 4307 |
| Bme1390I | CCNGG | 7 cut(s) | 840, 2554, 2999, 3027, 3174, 3728, 4054 |
| Bme18I | GGWCC | 3 cut(s) | 1288, 1525, 2507 |
| BmgT120I | GGNCC | 8 cut(s) | 301, 432, 1288, 1525, 2173, 2507, 2533, 3724 |
| BmiI | GGNNCC | 8 cut(s) | 168, 433, 480, 757, 1162, 1479, 1954, 3020 |
| BmrFI | CCNGG | 7 cut(s) | 840, 2554, 2999, 3027, 3174, 3728, 4054 |
| BmrI | ACTGGG | 3 cut(s) | 532, 718, 787 |
| BmuI | ACTGGG | 3 cut(s) | 532, 718, 787 |
| BpiI | GAAGAC | 2 cut(s) | 1328, 1643 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 4087, 4119 |
| BpmI | CTGGAG | 1 cut(s) | 564 |
| Bpu10I | CCTNAGC | 3 cut(s) | 696, 3004, 4340 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 378, 1921, 4307 |
| Bpu14I | TTCGAA | 1 cut(s) | 1795 |
| BpuEI | CTTGAG | 5 cut(s) | 225, 272, 413, 519, 815 |
| Bsa29I | ATCGAT | 2 cut(s) | 934, 2707 |
| BsaAI | YACGTR | 1 cut(s) | 3895 |
| BsaHI | GRCGYC | 3 cut(s) | 1667, 1953, 2287 |
| BsaI | GGTCTC | 3 cut(s) | 2302, 2787, 3989 |
| BsaWI | WCCGGW | 2 cut(s) | 1132, 2509 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3066, 3096 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 137, 561, 1623, 1935, 2901, 3383 |
| Bse118I | RCCGGY | 2 cut(s) | 434, 2990 |
| Bse3DI | GCAATG | 4 cut(s) | 980, 1276, 1634, 2223 |
| BseBI | CCWGG | 7 cut(s) | 840, 2554, 2999, 3027, 3174, 3728, 4054 |
| BseCI | ATCGAT | 2 cut(s) | 934, 2707 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 137, 561, 1623, 1935, 2901, 3383 |
| BseMI | GCAATG | 4 cut(s) | 980, 1276, 1634, 2223 |
| BseSI | GKGCMC | 2 cut(s) | 4223, 4262 |
| BseYI | CCCAGC | 2 cut(s) | 2132, 4311 |
| BsgI | GTGCAG | 6 cut(s) | 478, 1354, 1455, 2261, 4143, 4229 |
| Bsh1236I | CGCG | 2 cut(s) | 3567, 4302 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1003, 3751 |
| BshNI | GGYRCC | 2 cut(s) | 755, 1952 |
| BshVI | ATCGAT | 2 cut(s) | 934, 2707 |
| BsiEI | CGRYCG | 2 cut(s) | 1003, 3751 |
| BsiHKAI | GWGCWC | 4 cut(s) | 409, 1922, 4223, 4323 |
| BsiSI | CCGG | 5 cut(s) | 138, 435, 1133, 2510, 2991 |
| BslFI | GGGAC | 1 cut(s) | 840 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 137, 561, 1623, 1935, 2901, 3383 |
| BsmBI | CGTCTC | 2 cut(s) | 312, 1039 |
| BsmFI | GGGAC | 1 cut(s) | 840 |
| BsmI | GAATGC | 4 cut(s) | 1601, 2154, 3958, 4204 |
| Bso31I | GGTCTC | 3 cut(s) | 2302, 2787, 3989 |
| Bsp119I | TTCGAA | 1 cut(s) | 1795 |
| Bsp1286I | GDGCHC | 6 cut(s) | 409, 1922, 3452, 4223, 4262, 4323 |
| Bsp1407I | TGTACA | 1 cut(s) | 2208 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 378, 1921, 4307 |
| Bsp19I | CCATGG | 1 cut(s) | 2932 |
| BspACI | CCGC | 5 cut(s) | 341, 2247, 4093, 4213, 4300 |
| BspDI | ATCGAT | 2 cut(s) | 934, 2707 |
| BspFNI | CGCG | 2 cut(s) | 3567, 4302 |
| BspHI | TCATGA | 3 cut(s) | 2298, 2769, 3223 |
| BspLI | GGNNCC | 8 cut(s) | 168, 433, 480, 757, 1162, 1479, 1954, 3020 |
| BspMAI | CTGCAG | 2 cut(s) | 235, 654 |
| BspPI | GGATC | 8 cut(s) | 538, 884, 939, 1472, 1485, 1808, 3038, 3541 |
| BspQI | GCTCTTC | 3 cut(s) | 1910, 2362, 3928 |
| BspT104I | TTCGAA | 1 cut(s) | 1795 |
| BspT107I | GGYRCC | 2 cut(s) | 755, 1952 |
| BspTNI | GGTCTC | 3 cut(s) | 2302, 2787, 3989 |
| BsrDI | GCAATG | 4 cut(s) | 980, 1276, 1634, 2223 |
| BsrFI | RCCGGY | 2 cut(s) | 434, 2990 |
| BsrGI | TGTACA | 1 cut(s) | 2208 |
| BssAI | RCCGGY | 2 cut(s) | 434, 2990 |
| BssNAI | GTATAC | 1 cut(s) | 4063 |
| BssNI | GRCGYC | 3 cut(s) | 1667, 1953, 2287 |
| BssSI | CACGAG | 1 cut(s) | 14 |
| BssT1I | CCWWGG | 5 cut(s) | 2176, 2932, 2943, 3965, 4188 |
| Bst1107I | GTATAC | 1 cut(s) | 4063 |
| Bst2BI | CACGAG | 1 cut(s) | 14 |
| Bst2UI | CCWGG | 7 cut(s) | 840, 2554, 2999, 3027, 3174, 3728, 4054 |
| Bst6I | CTCTTC | 7 cut(s) | 360, 1910, 2334, 2362, 2969, 3777, 3928 |
| BstACI | GRCGYC | 3 cut(s) | 1667, 1953, 2287 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 338, 1377 |
| BstAUI | TGTACA | 1 cut(s) | 2208 |
| BstBAI | YACGTR | 1 cut(s) | 3895 |
| BstBI | TTCGAA | 1 cut(s) | 1795 |
| BstDSI | CCRYGG | 2 cut(s) | 2751, 2932 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2899 |
| BstFNI | CGCG | 2 cut(s) | 3567, 4302 |
| BstH2I | RGCGCY | 3 cut(s) | 1873, 1956, 1962 |
| BstHHI | GCGC | 3 cut(s) | 1872, 1955, 1961 |
| BstMCI | CGRYCG | 2 cut(s) | 1003, 3751 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 236, 245, 338, 379, 1377, 2284, 4157, 4199, 4308 |
| BstNI | CCWGG | 7 cut(s) | 840, 2554, 2999, 3027, 3174, 3728, 4054 |
| BstNSI | RCATGY | 3 cut(s) | 1391, 1472, 2459 |
| BstSCI | CCNGG | 7 cut(s) | 838, 2552, 2997, 3025, 3172, 3726, 4052 |
| BstSFI | CTRYAG | 3 cut(s) | 231, 650, 2478 |
| BstSLI | GKGCMC | 2 cut(s) | 4223, 4262 |
| BstUI | CGCG | 2 cut(s) | 3567, 4302 |
| BstV2I | GAAGAC | 2 cut(s) | 1328, 1643 |
| BstX2I | RGATCY | 2 cut(s) | 530, 1477 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1619, 3842 |
| BstYI | RGATCY | 2 cut(s) | 530, 1477 |
| BstZ17I | GTATAC | 1 cut(s) | 4063 |
| Bsu15I | ATCGAT | 2 cut(s) | 934, 2707 |
| BsuI | GTATCC | 2 cut(s) | 346, 510 |
| BsuTUI | ATCGAT | 2 cut(s) | 934, 2707 |
| BtgI | CCRYGG | 2 cut(s) | 2751, 2932 |
| BtgZI | GCGATG | 1 cut(s) | 1989 |
| BtsI | GCAGTG | 3 cut(s) | 91, 1371, 2211 |
| CaiI | CAGNNNCTG | 2 cut(s) | 908, 1351 |
| CciI | TCATGA | 3 cut(s) | 2298, 2769, 3223 |
| CfoI | GCGC | 3 cut(s) | 1872, 1955, 1961 |
| Cfr10I | RCCGGY | 2 cut(s) | 434, 2990 |
| Cfr13I | GGNCC | 8 cut(s) | 301, 432, 1288, 1525, 2173, 2507, 2533, 3724 |
| ClaI | ATCGAT | 2 cut(s) | 934, 2707 |
| CseI | GACGC | 6 cut(s) | 914, 1157, 2276, 3695, 4140, 4252 |
| Csp6I | GTAC | 8 cut(s) | 128, 801, 1563, 1889, 2209, 3266, 3424, 3761 |
| CviQI | GTAC | 8 cut(s) | 128, 801, 1563, 1889, 2209, 3266, 3424, 3761 |
| DinI | GGCGCC | 1 cut(s) | 1954 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1666 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1666 |
| EaeI | YGGCCR | 3 cut(s) | 795, 3637, 4297 |
| Eam1104I | CTCTTC | 7 cut(s) | 360, 1910, 2334, 2362, 2969, 3777, 3928 |
| EarI | CTCTTC | 7 cut(s) | 360, 1910, 2334, 2362, 2969, 3777, 3928 |
| Ecl136II | GAGCTC | 1 cut(s) | 1920 |
| Eco130I | CCWWGG | 5 cut(s) | 2176, 2932, 2943, 3965, 4188 |
| Eco147I | AGGCCT | 1 cut(s) | 3002 |
| Eco24I | GRGCYC | 2 cut(s) | 1922, 3452 |
| Eco31I | GGTCTC | 3 cut(s) | 2302, 2787, 3989 |
| Eco32I | GATATC | 1 cut(s) | 135 |
| Eco47I | GGWCC | 3 cut(s) | 1288, 1525, 2507 |
| Eco47III | AGCGCT | 2 cut(s) | 1871, 1960 |
| Eco53kI | GAGCTC | 1 cut(s) | 1920 |
| Eco57I | CTGAAG | 7 cut(s) | 519, 962, 1439, 1983, 2298, 2609, 3593 |
| EcoICRI | GAGCTC | 1 cut(s) | 1920 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2899 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1525, 3724 |
| EcoRI | GAATTC | 2 cut(s) | 2034, 4098 |
| EcoRII | CCWGG | 7 cut(s) | 838, 2552, 2997, 3025, 3172, 3726, 4052 |
| EcoRV | GATATC | 1 cut(s) | 135 |
| EcoT14I | CCWWGG | 5 cut(s) | 2176, 2932, 2943, 3965, 4188 |
| EcoT22I | ATGCAT | 3 cut(s) | 467, 1470, 1981 |
| EcoT38I | GRGCYC | 2 cut(s) | 1922, 3452 |
| EgeI | GGCGCC | 1 cut(s) | 1954 |
| EheI | GGCGCC | 1 cut(s) | 1954 |
| ErhI | CCWWGG | 5 cut(s) | 2176, 2932, 2943, 3965, 4188 |
| Esp3I | CGTCTC | 2 cut(s) | 312, 1039 |
| FaqI | GGGAC | 1 cut(s) | 840 |
| FblI | GTMKAC | 1 cut(s) | 4062 |
| FriOI | GRGCYC | 2 cut(s) | 1922, 3452 |
| GlaI | GCGC | 3 cut(s) | 1871, 1954, 1960 |
| GsaI | CCCAGC | 2 cut(s) | 2136, 4315 |
| GsuI | CTGGAG | 1 cut(s) | 564 |
| HaeII | RGCGCY | 3 cut(s) | 1873, 1956, 1962 |
| HapII | CCGG | 5 cut(s) | 138, 435, 1133, 2510, 2991 |
| HgaI | GACGC | 6 cut(s) | 914, 1157, 2276, 3695, 4140, 4252 |
| HhaI | GCGC | 3 cut(s) | 1872, 1955, 1961 |
| Hin1I | GRCGYC | 3 cut(s) | 1667, 1953, 2287 |
| Hin6I | GCGC | 3 cut(s) | 1870, 1953, 1959 |
| HinP1I | GCGC | 3 cut(s) | 1870, 1953, 1959 |
| HindIII | AAGCTT | 2 cut(s) | 501, 1007 |
| HpaII | CCGG | 5 cut(s) | 138, 435, 1133, 2510, 2991 |
| HphI | GGTGA | 9 cut(s) | 899, 1147, 1435, 2030, 2251, 2610, 3514, 3821, 3881 |
| Hpy166II | GTNNAC | 7 cut(s) | 620, 1052, 1406, 1514, 2211, 4063, 4221 |
| Hpy8I | GTNNAC | 7 cut(s) | 620, 1052, 1406, 1514, 2211, 4063, 4221 |
| HpyCH4IV | ACGT | 5 cut(s) | 1048, 1553, 1667, 1861, 3894 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 236, 245, 338, 379, 1377, 2284, 4157, 4199, 4308 |
| HpySE526I | ACGT | 5 cut(s) | 1048, 1553, 1667, 1861, 3894 |
| Hsp92I | GRCGYC | 3 cut(s) | 1667, 1953, 2287 |
| HspAI | GCGC | 3 cut(s) | 1870, 1953, 1959 |
| KasI | GGCGCC | 1 cut(s) | 1952 |
| KroI | GCCGGC | 2 cut(s) | 434, 2990 |
| KroNI | GCCGGC | 2 cut(s) | 436, 2992 |
| LguI | GCTCTTC | 3 cut(s) | 1910, 2362, 3928 |
| LmnI | GCTCC | 8 cut(s) | 28, 193, 484, 1166, 1186, 3241, 4039, 4318 |
| MaeII | ACGT | 5 cut(s) | 1048, 1553, 1667, 1861, 3894 |
| MfeI | CAATTG | 2 cut(s) | 1848, 2281 |
| MflI | RGATCY | 2 cut(s) | 530, 1477 |
| MhlI | GDGCHC | 6 cut(s) | 409, 1922, 3452, 4223, 4262, 4323 |
| MlsI | TGGCCA | 2 cut(s) | 797, 3639 |
| MluNI | TGGCCA | 2 cut(s) | 797, 3639 |
| Mly113I | GGCGCC | 1 cut(s) | 1953 |
| MlyI | GAGTC | 6 cut(s) | 104, 269, 566, 822, 1219, 1357 |
| MmeI | TCCRAC | 3 cut(s) | 396, 3620, 3721 |
| Mox20I | TGGCCA | 2 cut(s) | 797, 3639 |
| Mph1103I | ATGCAT | 3 cut(s) | 467, 1470, 1981 |
| MroNI | GCCGGC | 2 cut(s) | 434, 2990 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2676, 2708 |
| MscI | TGGCCA | 2 cut(s) | 797, 3639 |
| MseI | TTAA | 6 cut(s) | 720, 2240, 2544, 2576, 2609, 3480 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1397, 2216, 2264, 2339, 3990, 4078 |
| Msp20I | TGGCCA | 2 cut(s) | 797, 3639 |
| MspA1I | CMGCKG | 3 cut(s) | 695, 4136, 4213 |
| MspI | CCGG | 5 cut(s) | 138, 435, 1133, 2510, 2991 |
| MspR9I | CCNGG | 7 cut(s) | 840, 2554, 2999, 3027, 3174, 3728, 4054 |
| MunI | CAATTG | 2 cut(s) | 1848, 2281 |
| Mva1269I | GAATGC | 4 cut(s) | 1601, 2154, 3958, 4204 |
| MvaI | CCWGG | 7 cut(s) | 840, 2554, 2999, 3027, 3174, 3728, 4054 |
| MvnI | CGCG | 2 cut(s) | 3567, 4302 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 236, 245, 338, 379, 1377, 2284, 4157, 4199, 4308 |
| NaeI | GCCGGC | 2 cut(s) | 436, 2992 |
| NarI | GGCGCC | 1 cut(s) | 1953 |
| NcoI | CCATGG | 1 cut(s) | 2932 |
| NgoMIV | GCCGGC | 2 cut(s) | 434, 2990 |
| NlaIV | GGNNCC | 8 cut(s) | 168, 433, 480, 757, 1162, 1479, 1954, 3020 |
| NmeAIII | GCCGAG | 1 cut(s) | 73 |
| NmuCI | GTSAC | 4 cut(s) | 1135, 1668, 2257, 3113 |
| NsiI | ATGCAT | 3 cut(s) | 467, 1470, 1981 |
| NspI | RCATGY | 3 cut(s) | 1391, 1472, 2459 |
| NspV | TTCGAA | 1 cut(s) | 1795 |
| OliI | CACNNNNGTG | 1 cut(s) | 2264 |
| PaeI | GCATGC | 1 cut(s) | 1391 |
| PagI | TCATGA | 3 cut(s) | 2298, 2769, 3223 |
| PasI | CCCWGGG | 1 cut(s) | 839 |
| PceI | AGGCCT | 1 cut(s) | 3002 |
| PciSI | GCTCTTC | 3 cut(s) | 1910, 2362, 3928 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1045 |
| PctI | GAATGC | 4 cut(s) | 1601, 2154, 3958, 4204 |
| PdiI | GCCGGC | 2 cut(s) | 436, 2992 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2676, 2708 |
| Ple19I | CGATCG | 2 cut(s) | 1003, 3751 |
| PleI | GAGTC | 6 cut(s) | 104, 268, 565, 822, 1218, 1356 |
| PluTI | GGCGCC | 1 cut(s) | 1956 |
| PpsI | GAGTC | 6 cut(s) | 104, 268, 565, 822, 1218, 1356 |
| Ppu21I | YACGTR | 1 cut(s) | 3895 |
| PpuMI | RGGWCCY | 1 cut(s) | 1525 |
| PsiI | TTATAA | 6 cut(s) | 459, 2958, 3132, 3237, 3515, 3702 |
| Psp124BI | GAGCTC | 1 cut(s) | 1922 |
| Psp5II | RGGWCCY | 1 cut(s) | 1525 |
| Psp6I | CCWGG | 7 cut(s) | 838, 2552, 2997, 3025, 3172, 3726, 4052 |
| PspFI | CCCAGC | 2 cut(s) | 2132, 4311 |
| PspGI | CCWGG | 7 cut(s) | 838, 2552, 2997, 3025, 3172, 3726, 4052 |
| PspN4I | GGNNCC | 8 cut(s) | 168, 433, 480, 757, 1162, 1479, 1954, 3020 |
| PspPI | GGNCC | 8 cut(s) | 301, 432, 1288, 1525, 2173, 2507, 2533, 3724 |
| PspPPI | RGGWCCY | 1 cut(s) | 1525 |
| PstI | CTGCAG | 2 cut(s) | 235, 654 |
| PstNI | CAGNNNCTG | 2 cut(s) | 908, 1351 |
| PsuI | RGATCY | 2 cut(s) | 530, 1477 |
| PvuI | CGATCG | 2 cut(s) | 1003, 3751 |
| PvuII | CAGCTG | 2 cut(s) | 695, 4136 |
| RsaI | GTAC | 8 cut(s) | 129, 802, 1564, 1890, 2210, 3267, 3425, 3762 |
| RsaNI | GTAC | 8 cut(s) | 128, 801, 1563, 1889, 2209, 3266, 3424, 3761 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1397, 2216, 2264, 2339, 3990, 4078 |
| SacI | GAGCTC | 1 cut(s) | 1922 |
| SapI | GCTCTTC | 3 cut(s) | 1910, 2362, 3928 |
| SaqAI | TTAA | 6 cut(s) | 720, 2240, 2544, 2576, 2609, 3480 |
| Sau96I | GGNCC | 8 cut(s) | 301, 432, 1288, 1525, 2173, 2507, 2533, 3724 |
| SchI | GAGTC | 6 cut(s) | 104, 269, 566, 822, 1219, 1357 |
| ScrFI | CCNGG | 7 cut(s) | 840, 2554, 2999, 3027, 3174, 3728, 4054 |
| SduI | GDGCHC | 6 cut(s) | 409, 1922, 3452, 4223, 4262, 4323 |
| SfcI | CTRYAG | 3 cut(s) | 231, 650, 2478 |
| SfoI | GGCGCC | 1 cut(s) | 1954 |
| SfuI | TTCGAA | 1 cut(s) | 1795 |
| SinI | GGWCC | 3 cut(s) | 1288, 1525, 2507 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1397, 2216, 2264, 2339, 3990, 4078 |
| SmlI | CTYRAG | 5 cut(s) | 240, 251, 392, 534, 830 |
| SmoI | CTYRAG | 5 cut(s) | 240, 251, 392, 534, 830 |
| SpeI | ACTAGT | 2 cut(s) | 661, 1139 |
| SphI | GCATGC | 1 cut(s) | 1391 |
| SseBI | AGGCCT | 1 cut(s) | 3002 |
| SsiI | CCGC | 5 cut(s) | 341, 2247, 4093, 4213, 4300 |
| SspDI | GGCGCC | 1 cut(s) | 1952 |
| SspI | AATATT | 3 cut(s) | 64, 1585, 2645 |
| SstI | GAGCTC | 1 cut(s) | 1922 |
| StuI | AGGCCT | 1 cut(s) | 3002 |
| StyD4I | CCNGG | 7 cut(s) | 838, 2552, 2997, 3025, 3172, 3726, 4052 |
| StyI | CCWWGG | 5 cut(s) | 2176, 2932, 2943, 3965, 4188 |
| TaiI | ACGT | 5 cut(s) | 1051, 1556, 1670, 1864, 3897 |
| TatI | WGTACW | 2 cut(s) | 1888, 2208 |
| TauI | GCSGC | 1 cut(s) | 4302 |
| Tru1I | TTAA | 6 cut(s) | 720, 2240, 2544, 2576, 2609, 3480 |
| Tru9I | TTAA | 6 cut(s) | 720, 2240, 2544, 2576, 2609, 3480 |
| TseFI | GTSAC | 4 cut(s) | 1135, 1668, 2257, 3113 |
| Tsp45I | GTSAC | 4 cut(s) | 1135, 1668, 2257, 3113 |
| TspGWI | ACGGA | 2 cut(s) | 529, 1042 |
| VneI | GTGCAC | 1 cut(s) | 4219 |
| VpaK11BI | GGWCC | 3 cut(s) | 1288, 1525, 2507 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2899 |
| XceI | RCATGY | 3 cut(s) | 1391, 1472, 2459 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 311, 4073 |
| XmiI | GTMKAC | 1 cut(s) | 4062 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2676, 2708 |
| ZraI | GACGTC | 1 cut(s) | 1668 |
| Zsp2I | ATGCAT | 3 cut(s) | 467, 1470, 1981 |