Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008132

Physical Location & Seq

Genomic Coordinates Forward (+)

453101 .. 455269

Gene Structure 2169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGTAGGAGTTACTCCAGACAATGGAAGTAGGAGACGTTTACCGCAGTGGATGCTGGGCATATCTTCTGGTGTCCAAGTAAGCAAGCCTGGTAATGTTAAGGAAAATGGAAAGGAGCTTCTGGAAGGGACCCAATCTCACGAAAATGAAACCTTGGAAGAAAACCCGCATGTTCTTGTAAAATGTGAGACAAAGAGAAGAAAAAGAAAATCAACCGAACAGGATGCAGACTTTGAAGATGATGTCCCAGAAACTGTTCCAGAAAAGAAGCGTAATGGACGTGGGAGAAGAAAAGTTCAGGAGCCTGCAGCTCCAAAGAGACAAAAAACAAAGGATCCTGGAGAAGGGATACAGCTTCAGGAAAAGGAAACTCTGGAAGAGAATTCACACTTTCTTACAAAATGTGAGACAAAAAGAAGAAAAAGTAAATCAGATGAACAAGAAGTACGGACTTCGACTGTTGATGATGTTGAACTGACGGTGGAAGATTTAGTGATCATTGCTGAAGAGTATATTGAAGCTGATAGAAGTATGAAGCGAGAAGAATTATCGAACCAAGAACGTGAATCAGACAGGAGACTTGTAGAAAGAGTCTGTTCCGGTAATGTGTTCGAAGATTCTGTTGATGCCCAAAAGGGTAATCAAGGATCACTTATACCGGATACAACTACGTCCAAGCCAAATGGGGGTTTGACAAGTACAGAAATGAACTTGAATTCCAGCGGGAGAGATGATCCTGCTCAGGACATGCTGGATCTGTTTTTAGGGCCGTTGCTGAAGAAAACTGTCGAGAAGGAGACAAAGGAGAAGGACAGAAAGGCTCAAATGTTGACAGAGAATATGACATTTTCCCAAGAATTCAAAAGACAAGGTGAGAGTAATGTCATTAGAGAAGAAATTCCCCCCGCCCCCATAGTGAAGAAGAAGAGCAGTCTTAGAGACAAGGTGGCAATGTTTCTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

36.44

Weight (kDa)

5.54

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008132)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36500 FvH4_4g36500
malus_domestica	MD13G1008600.v1.1
prunus_persica	Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1 Prupe.1G344100_v2.0.a1
pyrus_communis	pycom13g00720
rosa_chinensis	RchiOBHm_Chr4g0446261
rosa_laevigata	RLG00000005676
rosa_multiflora	Rmu_co8265537.1_g000001 Rmu_sc0022410.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386660
rosa_rugosa	Rorug04G0369100 Rorug04G0369200 Rorug04G0369300
rosa_samantha	Rh4AG431100 Rh4BG440500 Rh4CG457800 Rh4DG439000
rosa_wichuraiana	Rw4G036830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	23
AciI	CCGC	4 cut(s)	44, 167, 723, 906
AclWI	GGATC	5 cut(s)	329, 342, 655, 728, 762
AcsI	RAATTY	4 cut(s)	382, 715, 857, 897
AcuI	CTGAAG	3 cut(s)	341, 525, 797
AfaI	GTAC	2 cut(s)	447, 700
AfiI	CCNNNNNNNGG	3 cut(s)	23, 344, 686
AgsI	TTSAA	5 cut(s)	236, 473, 518, 715, 862
AjiI	CACGTC	1 cut(s)	281
AjnI	CCWGG	2 cut(s)	88, 337
AloI	GAACNNNNNNTCC	2 cut(s)	701, 733
AluBI	AGCT	4 cut(s)	118, 311, 355, 521
AluI	AGCT	4 cut(s)	118, 311, 355, 521
Alw26I	GTCTC	7 cut(s)	28, 182, 313, 401, 571, 791, 933
AlwI	GGATC	5 cut(s)	329, 342, 655, 728, 762
AlwNI	CAGNNNCTG	1 cut(s)	254
AoxI	GGCC	1 cut(s)	767
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	4 cut(s)	382, 715, 857, 897
Asp700I	GAANNNNTTC	2 cut(s)	255, 897
AspS9I	GGNCC	2 cut(s)	129, 767
AsuHPI	GGTGA	1 cut(s)	884
AsuII	TTCGAA	1 cut(s)	612
AvaII	GGWCC	1 cut(s)	129
BamHI	GGATCC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	320
BceAI	ACGGC	1 cut(s)	754
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	2 cut(s)	90, 339
BciVI	GTATCC	2 cut(s)	342, 655
BclI	TGATCA	1 cut(s)	495
BcoDI	GTCTC	7 cut(s)	28, 182, 313, 401, 571, 791, 933
BfmI	CTRYAG	1 cut(s)	306
BfuI	GTATCC	2 cut(s)	342, 655
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	2 cut(s)	90, 339
Bme18I	GGWCC	1 cut(s)	129
BmgBI	CACGTC	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	129, 767
BmiI	GGNNCC	4 cut(s)	130, 131, 303, 336
BmrFI	CCNGG	2 cut(s)	90, 339
BmsI	GCATC	3 cut(s)	42, 214, 616
BpmI	CTGGAG	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	741
Bpu14I	TTCGAA	1 cut(s)	612
BsaJI	CCNNGG	1 cut(s)	153
BsaWI	WCCGGW	2 cut(s)	599, 658
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 344, 686
Bse3DI	GCAATG	2 cut(s)	498, 957
BseBI	CCWGG	2 cut(s)	90, 339
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	57, 229
BseLI	CCNNNNNNNGG	3 cut(s)	23, 344, 686
BseMI	GCAATG	2 cut(s)	498, 957
BseMII	CTCAG	1 cut(s)	755
BseXI	GCAGC	1 cut(s)	320
BseYI	CCCAGC	1 cut(s)	55
BshFI	GGCC	1 cut(s)	769
BsiSI	CCGG	2 cut(s)	600, 659
BslFI	GGGAC	2 cut(s)	142, 230
BslI	CCNNNNNNNGG	3 cut(s)	23, 344, 686
BsmAI	GTCTC	7 cut(s)	28, 182, 313, 401, 571, 791, 933
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	2 cut(s)	142, 230
BsnI	GGCC	1 cut(s)	769
Bsp119I	TTCGAA	1 cut(s)	612
Bsp143I	GATC	5 cut(s)	334, 495, 647, 733, 754
BspACI	CCGC	4 cut(s)	44, 167, 723, 906
BspANI	GGCC	1 cut(s)	769
BspCNI	CTCAG	1 cut(s)	754
BspLI	GGNNCC	4 cut(s)	130, 131, 303, 336
BspMAI	CTGCAG	1 cut(s)	310
BspPI	GGATC	5 cut(s)	329, 342, 655, 728, 762
BspQI	GCTCTTC	1 cut(s)	920
BspT104I	TTCGAA	1 cut(s)	612
BsrDI	GCAATG	2 cut(s)	498, 957
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	5 cut(s)	334, 495, 647, 733, 754
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	90, 339
Bst4CI	ACNGT	4 cut(s)	256, 460, 481, 787
Bst6I	CTCTTC	3 cut(s)	372, 501, 920
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstBI	TTCGAA	1 cut(s)	612
BstC8I	GCNNGC	2 cut(s)	86, 306
BstDEI	CTNAG	2 cut(s)	741, 935
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	57, 229
BstKTI	GATC	5 cut(s)	337, 498, 650, 736, 757
BstMAI	GTCTC	7 cut(s)	28, 182, 313, 401, 571, 791, 933
BstMBI	GATC	5 cut(s)	334, 495, 647, 733, 754
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	2 cut(s)	90, 339
BstNSI	RCATGY	2 cut(s)	173, 751
BstSCI	CCNGG	2 cut(s)	88, 337
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	320
BstX2I	RGATCY	2 cut(s)	334, 754
BstYI	RGATCY	2 cut(s)	334, 754
BsuI	GTATCC	2 cut(s)	342, 655
BsuRI	GGCC	1 cut(s)	769
BtrI	CACGTC	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	57, 229
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	86, 306
CaiI	CAGNNNCTG	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	129, 767
Csp6I	GTAC	2 cut(s)	446, 699
CviAII	CATG	2 cut(s)	170, 748
CviJI	RGCY	9 cut(s)	88, 118, 304, 311, 355, 521, 679, 769, 821
CviKI_1	RGCY	9 cut(s)	88, 118, 304, 311, 355, 521, 679, 769, 821
CviQI	GTAC	2 cut(s)	446, 699
DdeI	CTNAG	2 cut(s)	741, 935
DpnI	GATC	5 cut(s)	336, 497, 649, 735, 756
DpnII	GATC	5 cut(s)	334, 495, 647, 733, 754
Eam1104I	CTCTTC	3 cut(s)	372, 501, 920
EarI	CTCTTC	3 cut(s)	372, 501, 920
Eco130I	CCWWGG	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	129
Eco57I	CTGAAG	3 cut(s)	341, 525, 797
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	129
EcoRI	GAATTC	3 cut(s)	382, 715, 857
EcoRII	CCWGG	2 cut(s)	88, 337
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	2 cut(s)	173, 751
FaiI	YATR	8 cut(s)	62, 171, 513, 533, 656, 749, 842, 914
FalI	AAGNNNNNCTT	2 cut(s)	636, 668
FaqI	GGGAC	2 cut(s)	142, 230
FatI	CATG	2 cut(s)	169, 747
FauI	CCCGC	3 cut(s)	174, 716, 913
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	2 cut(s)	64, 236
Fsp4HI	GCNGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	309
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	769
HapII	CCGG	2 cut(s)	600, 659
Hin1II	CATG	2 cut(s)	173, 751
HincII	GTYRAC	1 cut(s)	831
HindII	GTYRAC	1 cut(s)	831
HinfI	GANTC	3 cut(s)	566, 591, 617
HpaII	CCGG	2 cut(s)	600, 659
HphI	GGTGA	1 cut(s)	884
Hpy166II	GTNNAC	2 cut(s)	41, 831
Hpy188I	TCNGA	2 cut(s)	433, 571
Hpy8I	GTNNAC	2 cut(s)	41, 831
HpyAV	CCTTC	4 cut(s)	119, 338, 787, 802
HpyCH4III	ACNGT	4 cut(s)	256, 460, 481, 787
HpyCH4IV	ACGT	4 cut(s)	37, 280, 562, 671
HpyCH4V	TGCA	2 cut(s)	227, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	2 cut(s)	741, 935
HpySE526I	ACGT	4 cut(s)	37, 280, 562, 671
Hsp92II	CATG	2 cut(s)	173, 751
KflI	GGGWCCC	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	5 cut(s)	334, 495, 647, 733, 754
LguI	GCTCTTC	1 cut(s)	920
LmnI	GCTCC	3 cut(s)	115, 301, 316
Lsp1109I	GCAGC	1 cut(s)	320
LweI	GCATC	3 cut(s)	42, 214, 616
MaeII	ACGT	4 cut(s)	37, 280, 562, 671
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	5 cut(s)	336, 497, 649, 735, 756
MboI	GATC	5 cut(s)	334, 495, 647, 733, 754
MflI	RGATCY	2 cut(s)	334, 754
MluCI	AATT	5 cut(s)	382, 545, 715, 857, 897
MlyI	GAGTC	1 cut(s)	600
MroXI	GAANNNNTTC	2 cut(s)	255, 897
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	723
MspI	CCGG	2 cut(s)	600, 659
MspR9I	CCNGG	2 cut(s)	90, 339
MvaI	CCWGG	2 cut(s)	90, 339
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	5 cut(s)	334, 495, 647, 733, 754
NlaIII	CATG	2 cut(s)	173, 751
NlaIV	GGNNCC	4 cut(s)	130, 131, 303, 336
NspI	RCATGY	2 cut(s)	173, 751
NspV	TTCGAA	1 cut(s)	612
PciSI	GCTCTTC	1 cut(s)	920
PdmI	GAANNNNTTC	2 cut(s)	255, 897
PfeI	GAWTC	2 cut(s)	566, 617
PflMI	CCANNNNNTGG	1 cut(s)	23
PfoI	TCCNGGA	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	310
PleI	GAGTC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	599
PpuMI	RGGWCCY	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	129
Psp6I	CCWGG	2 cut(s)	88, 337
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	2 cut(s)	88, 337
PspN4I	GGNNCC	4 cut(s)	130, 131, 303, 336
PspPI	GGNCC	2 cut(s)	129, 767
PspPPI	RGGWCCY	1 cut(s)	129
PsrI	GAACNNNNNNTAC	2 cut(s)	429, 461
PstI	CTGCAG	1 cut(s)	310
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	334, 754
RsaI	GTAC	2 cut(s)	447, 700
RsaNI	GTAC	2 cut(s)	446, 699
RseI	CAYNNNNRTG	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	920
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	5 cut(s)	334, 495, 647, 733, 754
Sau96I	GGNCC	2 cut(s)	129, 767
SchI	GAGTC	1 cut(s)	600
ScrFI	CCNGG	2 cut(s)	90, 339
SfaNI	GCATC	3 cut(s)	42, 214, 616
SfcI	CTRYAG	1 cut(s)	306
SfuI	TTCGAA	1 cut(s)	612
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	144
Sse9I	AATT	5 cut(s)	382, 545, 715, 857, 897
SsiI	CCGC	4 cut(s)	44, 167, 723, 906
StyD4I	CCNGG	2 cut(s)	88, 337
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	4 cut(s)	256, 460, 481, 787
TaiI	ACGT	4 cut(s)	40, 283, 565, 674
TaqI	TCGA	4 cut(s)	455, 551, 612, 789
TasI	AATT	5 cut(s)	382, 545, 715, 857, 897
TatI	WGTACW	1 cut(s)	698
TfiI	GAWTC	2 cut(s)	566, 617
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	53
TseI	GCWGC	1 cut(s)	308
TspDTI	ATGAA	4 cut(s)	162, 450, 548, 722
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	1 cut(s)	53
Van91I	CCANNNNNTGG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	129
XagI	CCTNNNNNAGG	1 cut(s)	342
XapI	RAATTY	4 cut(s)	382, 715, 857, 897
XceI	RCATGY	2 cut(s)	173, 751
XmnI	GAANNNNTTC	2 cut(s)	255, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.