Histidine kinase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G01830 AT2G01830 AT2G01830 AT2G01830 AT2G01830 AT2G01830 |
| fragaria_vesca | FvH4_4g33130 FvH4_4g33130 FvH4_4g33130 FvH4_4g33130 FvH4_4g33130 FvH4_4g33130 FvH4_4g33130 |
| malus_domestica | MD13G1017000.v1.1 MD16G1014900.v1.1 |
| prunus_persica | Prupe.1G336400_v2.0.a1 Prupe.1G336400_v2.0.a1 |
| pyrus_communis | pycom13g01470 pycom16g01380 pycom16g01390 |
| rosa_chinensis | RchiOBHm_Chr4g0442181 |
| rosa_laevigata | RLG00000006026 RLG00000006029 RLG00000006032 |
| rosa_multiflora | Rmu_sc0010284.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00383100 |
| rosa_rugosa | Rorug04G0339300 Rorug04G0339300 Rorug04G0339300 |
| rosa_samantha | Rh4AG391100 Rh4BG404700 |
| rosa_wichuraiana | Rw4G033800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 12 |
| AarI | CACCTGC | 1 cut(s) | 2786 |
| Acc16I | TGCGCA | 2 cut(s) | 2019, 2490 |
| Acc36I | ACCTGC | 2 cut(s) | 2588, 2786 |
| Acc65I | GGTACC | 1 cut(s) | 933 |
| AccB1I | GGYRCC | 4 cut(s) | 933, 944, 1165, 2199 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 235, 2162 |
| AccI | GTMKAC | 3 cut(s) | 21, 2005, 2152 |
| AciI | CCGC | 6 cut(s) | 558, 923, 1184, 2606, 2873, 3044 |
| AclI | AACGTT | 1 cut(s) | 2721 |
| AclWI | GGATC | 6 cut(s) | 444, 1037, 1115, 1661, 2253, 2722 |
| AcoI | YGGCCR | 4 cut(s) | 924, 1843, 2373, 3141 |
| AcsI | RAATTY | 5 cut(s) | 973, 1653, 1718, 2141, 2751 |
| AcuI | CTGAAG | 2 cut(s) | 498, 3098 |
| AdeI | CACNNNGTG | 1 cut(s) | 235 |
| AfaI | GTAC | 4 cut(s) | 106, 935, 2170, 3098 |
| AflIII | ACRYGT | 2 cut(s) | 2026, 2158 |
| AjnI | CCWGG | 4 cut(s) | 918, 1669, 2667, 2692 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1533, 1565, 2738, 2770 |
| AleI | CACNNNNGTG | 1 cut(s) | 284 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 792, 824, 2706, 2738 |
| Alw21I | GWGCWC | 1 cut(s) | 2803 |
| Alw26I | GTCTC | 4 cut(s) | 730, 1790, 2326, 3106 |
| Alw44I | GTGCAC | 1 cut(s) | 2799 |
| AlwI | GGATC | 6 cut(s) | 444, 1037, 1115, 1661, 2253, 2722 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1316 |
| AoxI | GGCC | 7 cut(s) | 264, 569, 786, 924, 1843, 2373, 3141 |
| ApaLI | GTGCAC | 1 cut(s) | 2799 |
| ApoI | RAATTY | 5 cut(s) | 973, 1653, 1718, 2141, 2751 |
| AseI | ATTAAT | 1 cut(s) | 1484 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1542, 2398 |
| Asp718I | GGTACC | 1 cut(s) | 933 |
| AspA2I | CCTAGG | 1 cut(s) | 1387 |
| AspLEI | GCGC | 4 cut(s) | 700, 915, 2020, 2491 |
| AspS9I | GGNCC | 5 cut(s) | 264, 786, 1560, 1814, 2665 |
| AsuC2I | CCSGG | 1 cut(s) | 2413 |
| AsuHPI | GGTGA | 5 cut(s) | 1055, 1091, 1786, 2480, 3023 |
| AvaII | GGWCC | 3 cut(s) | 1560, 1814, 2665 |
| AvrII | CCTAGG | 1 cut(s) | 1387 |
| AxyI | CCTNAGG | 1 cut(s) | 2241 |
| BaeGI | GKGCMC | 1 cut(s) | 2803 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 925, 958 |
| BalI | TGGCCA | 2 cut(s) | 1845, 3143 |
| BanI | GGYRCC | 4 cut(s) | 933, 944, 1165, 2199 |
| BanII | GRGCYC | 1 cut(s) | 1767 |
| BbsI | GAAGAC | 1 cut(s) | 2648 |
| Bbv12I | GWGCWC | 1 cut(s) | 2803 |
| BceAI | ACGGC | 4 cut(s) | 911, 1179, 2360, 3057 |
| BciT130I | CCWGG | 4 cut(s) | 920, 1671, 2669, 2694 |
| BciVI | GTATCC | 3 cut(s) | 1984, 2432, 2602 |
| BclI | TGATCA | 1 cut(s) | 523 |
| BcnI | CCSGG | 1 cut(s) | 2413 |
| BcoDI | GTCTC | 4 cut(s) | 730, 1790, 2326, 3106 |
| BfmI | CTRYAG | 3 cut(s) | 364, 431, 2793 |
| BfuAI | ACCTGC | 2 cut(s) | 2588, 2786 |
| BfuI | GTATCC | 3 cut(s) | 1984, 2432, 2602 |
| BlnI | CCTAGG | 1 cut(s) | 1387 |
| BlpI | GCTNAGC | 1 cut(s) | 1761 |
| Bme1390I | CCNGG | 5 cut(s) | 920, 1671, 2413, 2669, 2694 |
| Bme18I | GGWCC | 3 cut(s) | 1560, 1814, 2665 |
| BmgT120I | GGNCC | 5 cut(s) | 264, 786, 1560, 1814, 2665 |
| BmiI | GGNNCC | 7 cut(s) | 265, 308, 672, 935, 946, 1167, 2201 |
| BmrFI | CCNGG | 5 cut(s) | 920, 1671, 2413, 2669, 2694 |
| BmrI | ACTGGG | 2 cut(s) | 269, 1330 |
| BmuI | ACTGGG | 2 cut(s) | 269, 1330 |
| BpiI | GAAGAC | 1 cut(s) | 2648 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1761 |
| BpuEI | CTTGAG | 2 cut(s) | 1440, 2116 |
| BpuMI | CCSGG | 1 cut(s) | 2413 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1845 |
| BsaJI | CCNNGG | 5 cut(s) | 937, 1387, 1670, 2668, 2693 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2808, 2838 |
| Bse1I | ACTGG | 7 cut(s) | 264, 802, 1336, 1892, 2089, 2507, 3020 |
| Bse21I | CCTNAGG | 1 cut(s) | 2241 |
| Bse3DI | GCAATG | 1 cut(s) | 1257 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1845 |
| BseBI | CCWGG | 4 cut(s) | 920, 1671, 2669, 2694 |
| BseDI | CCNNGG | 5 cut(s) | 937, 1387, 1670, 2668, 2693 |
| BseJI | GATNNNNATC | 1 cut(s) | 1845 |
| BseMI | GCAATG | 1 cut(s) | 1257 |
| BseMII | CTCAG | 4 cut(s) | 310, 1752, 1950, 2232 |
| BseNI | ACTGG | 7 cut(s) | 264, 802, 1336, 1892, 2089, 2507, 3020 |
| BseRI | GAGGAG | 2 cut(s) | 42, 776 |
| BseSI | GKGCMC | 1 cut(s) | 2803 |
| BseX3I | CGGCCG | 1 cut(s) | 924 |
| BseYI | CCCAGC | 2 cut(s) | 832, 992 |
| BsgI | GTGCAG | 1 cut(s) | 308 |
| Bsh1285I | CGRYCG | 1 cut(s) | 927 |
| BshFI | GGCC | 7 cut(s) | 266, 571, 788, 926, 1845, 2375, 3143 |
| BshNI | GGYRCC | 4 cut(s) | 933, 944, 1165, 2199 |
| BsiEI | CGRYCG | 1 cut(s) | 927 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2803 |
| BsiSI | CCGG | 2 cut(s) | 2412, 2947 |
| BslFI | GGGAC | 3 cut(s) | 946, 1318, 1631 |
| BsmAI | GTCTC | 4 cut(s) | 730, 1790, 2326, 3106 |
| BsmBI | CGTCTC | 2 cut(s) | 730, 3106 |
| BsmFI | GGGAC | 3 cut(s) | 946, 1318, 1631 |
| BsmI | GAATGC | 3 cut(s) | 432, 1196, 1398 |
| BsnI | GGCC | 7 cut(s) | 266, 571, 788, 926, 1845, 2375, 3143 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1767, 2803 |
| Bsp143I | GATC | 8 cut(s) | 436, 523, 1042, 1120, 1666, 2245, 2479, 2714 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1761 |
| BspACI | CCGC | 6 cut(s) | 558, 923, 1184, 2606, 2873, 3044 |
| BspANI | GGCC | 7 cut(s) | 266, 571, 788, 926, 1845, 2375, 3143 |
| BspCNI | CTCAG | 4 cut(s) | 309, 1753, 1951, 2233 |
| BspHI | TCATGA | 2 cut(s) | 1357, 2619 |
| BspLI | GGNNCC | 7 cut(s) | 265, 308, 672, 935, 946, 1167, 2201 |
| BspMAI | CTGCAG | 2 cut(s) | 435, 2797 |
| BspMI | ACCTGC | 2 cut(s) | 2588, 2786 |
| BspPI | GGATC | 6 cut(s) | 444, 1037, 1115, 1661, 2253, 2722 |
| BspQI | GCTCTTC | 1 cut(s) | 215 |
| BspT107I | GGYRCC | 4 cut(s) | 933, 944, 1165, 2199 |
| BsrDI | GCAATG | 1 cut(s) | 1257 |
| BsrI | ACTGG | 7 cut(s) | 264, 802, 1336, 1892, 2089, 2507, 3020 |
| BssECI | CCNNGG | 5 cut(s) | 937, 1387, 1670, 2668, 2693 |
| BssMI | GATC | 8 cut(s) | 436, 523, 1042, 1120, 1666, 2245, 2479, 2714 |
| BssNAI | GTATAC | 1 cut(s) | 2006 |
| BssT1I | CCWWGG | 2 cut(s) | 937, 1387 |
| Bst1107I | GTATAC | 1 cut(s) | 2006 |
| Bst2UI | CCWGG | 4 cut(s) | 920, 1671, 2669, 2694 |
| Bst4CI | ACNGT | 8 cut(s) | 724, 904, 1351, 1505, 2057, 2311, 2516, 2614 |
| Bst6I | CTCTTC | 4 cut(s) | 215, 1095, 2324, 3114 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1316, 2603 |
| BstDEI | CTNAG | 5 cut(s) | 296, 1761, 1959, 2241, 2564 |
| BstEII | GGTNACC | 1 cut(s) | 1061 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 565 |
| BstHHI | GCGC | 4 cut(s) | 700, 915, 2020, 2491 |
| BstKTI | GATC | 8 cut(s) | 439, 526, 1045, 1123, 1669, 2248, 2482, 2717 |
| BstMAI | GTCTC | 4 cut(s) | 730, 1790, 2326, 3106 |
| BstMBI | GATC | 8 cut(s) | 436, 523, 1042, 1120, 1666, 2245, 2479, 2714 |
| BstMCI | CGRYCG | 1 cut(s) | 927 |
| BstNI | CCWGG | 4 cut(s) | 920, 1671, 2669, 2694 |
| BstNSI | RCATGY | 2 cut(s) | 470, 2162 |
| BstPI | GGTNACC | 1 cut(s) | 1061 |
| BstSCI | CCNGG | 5 cut(s) | 918, 1669, 2411, 2667, 2692 |
| BstSFI | CTRYAG | 3 cut(s) | 364, 431, 2793 |
| BstSLI | GKGCMC | 1 cut(s) | 2803 |
| BstV2I | GAAGAC | 1 cut(s) | 2648 |
| BstX2I | RGATCY | 4 cut(s) | 1120, 1666, 2245, 2714 |
| BstYI | RGATCY | 4 cut(s) | 1120, 1666, 2245, 2714 |
| BstZ17I | GTATAC | 1 cut(s) | 2006 |
| BstZI | CGGCCG | 1 cut(s) | 924 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2241 |
| BsuI | GTATCC | 3 cut(s) | 1984, 2432, 2602 |
| BsuRI | GGCC | 7 cut(s) | 266, 571, 788, 926, 1845, 2375, 3143 |
| BtgZI | GCGATG | 1 cut(s) | 660 |
| BtsI | GCAGTG | 4 cut(s) | 546, 1191, 2181, 3144 |
| BtsIMutI | CAGTG | 6 cut(s) | 451, 546, 1191, 1722, 2181, 3144 |
| BveI | ACCTGC | 2 cut(s) | 2588, 2786 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1316 |
| CciI | TCATGA | 2 cut(s) | 1357, 2619 |
| CfoI | GCGC | 4 cut(s) | 700, 915, 2020, 2491 |
| Cfr13I | GGNCC | 5 cut(s) | 264, 786, 1560, 1814, 2665 |
| CseI | GACGC | 1 cut(s) | 1526 |
| Csp6I | GTAC | 4 cut(s) | 105, 934, 2169, 3097 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 107, 142, 1683, 1718 |
| CviQI | GTAC | 4 cut(s) | 105, 934, 2169, 3097 |
| DdeI | CTNAG | 5 cut(s) | 296, 1761, 1959, 2241, 2564 |
| DpnI | GATC | 8 cut(s) | 438, 525, 1044, 1122, 1668, 2247, 2481, 2716 |
| DpnII | GATC | 8 cut(s) | 436, 523, 1042, 1120, 1666, 2245, 2479, 2714 |
| DraI | TTTAAA | 1 cut(s) | 1855 |
| DraIII | CACNNNGTG | 1 cut(s) | 235 |
| EaeI | YGGCCR | 4 cut(s) | 924, 1843, 2373, 3141 |
| EagI | CGGCCG | 1 cut(s) | 924 |
| Eam1104I | CTCTTC | 4 cut(s) | 215, 1095, 2324, 3114 |
| EarI | CTCTTC | 4 cut(s) | 215, 1095, 2324, 3114 |
| EciI | GGCGGA | 1 cut(s) | 3059 |
| EclXI | CGGCCG | 1 cut(s) | 924 |
| Eco130I | CCWWGG | 2 cut(s) | 937, 1387 |
| Eco147I | AGGCCT | 1 cut(s) | 571 |
| Eco24I | GRGCYC | 1 cut(s) | 1767 |
| Eco32I | GATATC | 1 cut(s) | 1154 |
| Eco47I | GGWCC | 3 cut(s) | 1560, 1814, 2665 |
| Eco52I | CGGCCG | 1 cut(s) | 924 |
| Eco57I | CTGAAG | 2 cut(s) | 498, 3098 |
| Eco81I | CCTNAGG | 1 cut(s) | 2241 |
| Eco91I | GGTNACC | 1 cut(s) | 1061 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 565 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2665 |
| EcoO65I | GGTNACC | 1 cut(s) | 1061 |
| EcoRII | CCWGG | 4 cut(s) | 918, 1669, 2667, 2692 |
| EcoRV | GATATC | 1 cut(s) | 1154 |
| EcoT14I | CCWWGG | 2 cut(s) | 937, 1387 |
| EcoT38I | GRGCYC | 1 cut(s) | 1767 |
| ErhI | CCWWGG | 2 cut(s) | 937, 1387 |
| Esp3I | CGTCTC | 2 cut(s) | 730, 3106 |
| FaqI | GGGAC | 3 cut(s) | 946, 1318, 1631 |
| FbaI | TGATCA | 1 cut(s) | 523 |
| FblI | GTMKAC | 3 cut(s) | 21, 2005, 2152 |
| FriOI | GRGCYC | 1 cut(s) | 1767 |
| FspI | TGCGCA | 2 cut(s) | 2019, 2490 |
| GlaI | GCGC | 4 cut(s) | 699, 914, 2019, 2490 |
| GsaI | CCCAGC | 2 cut(s) | 836, 996 |
| HaeIII | GGCC | 7 cut(s) | 266, 571, 788, 926, 1845, 2375, 3143 |
| HapII | CCGG | 2 cut(s) | 2412, 2947 |
| HgaI | GACGC | 1 cut(s) | 1526 |
| HhaI | GCGC | 4 cut(s) | 700, 915, 2020, 2491 |
| Hin6I | GCGC | 4 cut(s) | 698, 913, 2018, 2489 |
| HinP1I | GCGC | 4 cut(s) | 698, 913, 2018, 2489 |
| HincII | GTYRAC | 3 cut(s) | 360, 1189, 2153 |
| HindII | GTYRAC | 3 cut(s) | 360, 1189, 2153 |
| HindIII | AAGCTT | 3 cut(s) | 1458, 1953, 2294 |
| HpaI | GTTAAC | 2 cut(s) | 360, 1189 |
| HpaII | CCGG | 2 cut(s) | 2412, 2947 |
| HphI | GGTGA | 5 cut(s) | 1055, 1091, 1786, 2480, 3023 |
| Hpy166II | GTNNAC | 8 cut(s) | 22, 360, 874, 1189, 2006, 2153, 2779, 2801 |
| Hpy188III | TCNNGA | 9 cut(s) | 527, 565, 1073, 1358, 2067, 2240, 2368, 2620, 2660 |
| Hpy8I | GTNNAC | 8 cut(s) | 22, 360, 874, 1189, 2006, 2153, 2779, 2801 |
| HpyCH4III | ACNGT | 8 cut(s) | 724, 904, 1351, 1505, 2057, 2311, 2516, 2614 |
| HpyCH4IV | ACGT | 5 cut(s) | 1172, 1970, 2026, 2721, 3099 |
| HpyF3I | CTNAG | 5 cut(s) | 296, 1761, 1959, 2241, 2564 |
| HpySE526I | ACGT | 5 cut(s) | 1172, 1970, 2026, 2721, 3099 |
| HspAI | GCGC | 4 cut(s) | 698, 913, 2018, 2489 |
| KpnI | GGTACC | 1 cut(s) | 937 |
| Ksp22I | TGATCA | 1 cut(s) | 523 |
| KspAI | GTTAAC | 2 cut(s) | 360, 1189 |
| Kzo9I | GATC | 8 cut(s) | 436, 523, 1042, 1120, 1666, 2245, 2479, 2714 |
| LguI | GCTCTTC | 1 cut(s) | 215 |
| LmnI | GCTCC | 4 cut(s) | 891, 907, 1244, 2816 |
| MaeII | ACGT | 5 cut(s) | 1172, 1970, 2026, 2721, 3099 |
| MaeIII | GTNAC | 9 cut(s) | 738, 1027, 1061, 1079, 1706, 1966, 2219, 2311, 3011 |
| MalI | GATC | 8 cut(s) | 438, 525, 1044, 1122, 1668, 2247, 2481, 2716 |
| MboI | GATC | 8 cut(s) | 436, 523, 1042, 1120, 1666, 2245, 2479, 2714 |
| MfeI | CAATTG | 1 cut(s) | 519 |
| MflI | RGATCY | 4 cut(s) | 1120, 1666, 2245, 2714 |
| MhlI | GDGCHC | 2 cut(s) | 1767, 2803 |
| MlsI | TGGCCA | 2 cut(s) | 1845, 3143 |
| MluNI | TGGCCA | 2 cut(s) | 1845, 3143 |
| MlyI | GAGTC | 2 cut(s) | 746, 968 |
| MmeI | TCCRAC | 1 cut(s) | 626 |
| Mox20I | TGGCCA | 2 cut(s) | 1845, 3143 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1542, 2398 |
| MscI | TGGCCA | 2 cut(s) | 1845, 3143 |
| MslI | CAYNNNNRTG | 5 cut(s) | 284, 465, 849, 1973, 2369 |
| Msp20I | TGGCCA | 2 cut(s) | 1845, 3143 |
| MspA1I | CMGCKG | 1 cut(s) | 1184 |
| MspI | CCGG | 2 cut(s) | 2412, 2947 |
| MspR9I | CCNGG | 5 cut(s) | 920, 1671, 2413, 2669, 2694 |
| MunI | CAATTG | 1 cut(s) | 519 |
| Mva1269I | GAATGC | 3 cut(s) | 432, 1196, 1398 |
| MvaI | CCWGG | 4 cut(s) | 920, 1671, 2669, 2694 |
| NciI | CCSGG | 1 cut(s) | 2413 |
| NdeII | GATC | 8 cut(s) | 436, 523, 1042, 1120, 1666, 2245, 2479, 2714 |
| NlaIV | GGNNCC | 7 cut(s) | 265, 308, 672, 935, 946, 1167, 2201 |
| NmuCI | GTSAC | 6 cut(s) | 738, 1061, 1079, 1966, 2219, 3011 |
| NsbI | TGCGCA | 2 cut(s) | 2019, 2490 |
| NspI | RCATGY | 2 cut(s) | 470, 2162 |
| OliI | CACNNNNGTG | 1 cut(s) | 284 |
| PacI | TTAATTAA | 1 cut(s) | 1488 |
| PaeI | GCATGC | 1 cut(s) | 470 |
| PagI | TCATGA | 2 cut(s) | 1357, 2619 |
| PaqCI | CACCTGC | 1 cut(s) | 2786 |
| PceI | AGGCCT | 1 cut(s) | 571 |
| PciI | ACATGT | 1 cut(s) | 2158 |
| PciSI | GCTCTTC | 1 cut(s) | 215 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1169 |
| PctI | GAATGC | 3 cut(s) | 432, 1196, 1398 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1542, 2398 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 235, 2162 |
| PfoI | TCCNGGA | 1 cut(s) | 2411 |
| PleI | GAGTC | 2 cut(s) | 745, 967 |
| PpsI | GAGTC | 2 cut(s) | 745, 967 |
| PpuMI | RGGWCCY | 1 cut(s) | 2665 |
| PscI | ACATGT | 1 cut(s) | 2158 |
| PshBI | ATTAAT | 1 cut(s) | 1484 |
| PsiI | TTATAA | 1 cut(s) | 12 |
| Psp1406I | AACGTT | 1 cut(s) | 2721 |
| Psp5II | RGGWCCY | 1 cut(s) | 2665 |
| Psp6I | CCWGG | 4 cut(s) | 918, 1669, 2667, 2692 |
| PspEI | GGTNACC | 1 cut(s) | 1061 |
| PspFI | CCCAGC | 2 cut(s) | 832, 992 |
| PspGI | CCWGG | 4 cut(s) | 918, 1669, 2667, 2692 |
| PspN4I | GGNNCC | 7 cut(s) | 265, 308, 672, 935, 946, 1167, 2201 |
| PspPI | GGNCC | 5 cut(s) | 264, 786, 1560, 1814, 2665 |
| PspPPI | RGGWCCY | 1 cut(s) | 2665 |
| PstI | CTGCAG | 2 cut(s) | 435, 2797 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1316 |
| PsuI | RGATCY | 4 cut(s) | 1120, 1666, 2245, 2714 |
| RsaI | GTAC | 4 cut(s) | 106, 935, 2170, 3098 |
| RsaNI | GTAC | 4 cut(s) | 105, 934, 2169, 3097 |
| RseI | CAYNNNNRTG | 5 cut(s) | 284, 465, 849, 1973, 2369 |
| SalI | GTCGAC | 1 cut(s) | 2151 |
| SapI | GCTCTTC | 1 cut(s) | 215 |
| Sau3AI | GATC | 8 cut(s) | 436, 523, 1042, 1120, 1666, 2245, 2479, 2714 |
| Sau96I | GGNCC | 5 cut(s) | 264, 786, 1560, 1814, 2665 |
| SchI | GAGTC | 2 cut(s) | 746, 968 |
| ScrFI | CCNGG | 5 cut(s) | 920, 1671, 2413, 2669, 2694 |
| SduI | GDGCHC | 2 cut(s) | 1767, 2803 |
| SfcI | CTRYAG | 3 cut(s) | 364, 431, 2793 |
| SinI | GGWCC | 3 cut(s) | 1560, 1814, 2665 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 284, 465, 849, 1973, 2369 |
| SmlI | CTYRAG | 2 cut(s) | 1455, 2095 |
| SmoI | CTYRAG | 2 cut(s) | 1455, 2095 |
| SphI | GCATGC | 1 cut(s) | 470 |
| SseBI | AGGCCT | 1 cut(s) | 571 |
| SsiI | CCGC | 6 cut(s) | 558, 923, 1184, 2606, 2873, 3044 |
| SspI | AATATT | 1 cut(s) | 8 |
| StuI | AGGCCT | 1 cut(s) | 571 |
| StyD4I | CCNGG | 5 cut(s) | 918, 1669, 2411, 2667, 2692 |
| StyI | CCWWGG | 2 cut(s) | 937, 1387 |
| TaaI | ACNGT | 8 cut(s) | 724, 904, 1351, 1505, 2057, 2311, 2516, 2614 |
| TaiI | ACGT | 5 cut(s) | 1175, 1973, 2029, 2724, 3102 |
| TaqI | TCGA | 8 cut(s) | 564, 735, 881, 1306, 1427, 1447, 2152, 3114 |
| TaqII | GACCGA | 1 cut(s) | 1548 |
| TatI | WGTACW | 2 cut(s) | 104, 2168 |
| TauI | GCSGC | 1 cut(s) | 926 |
| TscAI | CASTG | 6 cut(s) | 451, 553, 1198, 1729, 2188, 3144 |
| TseFI | GTSAC | 6 cut(s) | 738, 1061, 1079, 1966, 2219, 3011 |
| Tsp45I | GTSAC | 6 cut(s) | 738, 1061, 1079, 1966, 2219, 3011 |
| TspGWI | ACGGA | 2 cut(s) | 1271, 1395 |
| TspRI | CASTG | 6 cut(s) | 451, 553, 1198, 1729, 2188, 3144 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 235, 2162 |
| VneI | GTGCAC | 1 cut(s) | 2799 |
| VpaK11BI | GGWCC | 3 cut(s) | 1560, 1814, 2665 |
| VspI | ATTAAT | 1 cut(s) | 1484 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 565 |
| XapI | RAATTY | 5 cut(s) | 973, 1653, 1718, 2141, 2751 |
| XbaI | TCTAGA | 1 cut(s) | 2066 |
| XceI | RCATGY | 2 cut(s) | 470, 2162 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 926, 1073 |
| XmaJI | CCTAGG | 1 cut(s) | 1387 |
| XmiI | GTMKAC | 3 cut(s) | 21, 2005, 2152 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1542, 2398 |