Rroxscaffold_5G00383100

Histidine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004318
Physical Location & Seq
Forward (+)
62785192 .. 62791474
6283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383100.1

Sequence Viewer

Length: 2910 bp
ATGGGTGGGAATTTGAAGATGCAGAGCCACCACTCTGTGGCTGTGAGGCTGAATGAGCAAATGGGGGCCAAAAAGGGCTTCACTTTTATTCAGGCCTACAGAGCTTGGTTCCCAAAGCTTTTGATGCTTTGGATTCTGGTGATGGCATATTTGAGCTTGTCAATCTTCAATTACATGGATGCTGATAACAAAGTGAGAAGGGTGGAAGTGCTTAGTAGCATGTGTGATCAGAGAGCAAGAATGTTGCAAGATCAGTTCAATGTTAGTGTTAATCATGTGCATGCCCTGGCCATCCTTGTTTCAACATTTCATTACCTCAAGAACCCATCAGCAATTGATCAGGAAACTTTTGCAGAATACACAGCCAGAACTGCCTTCGAGAGGCCTCTATTAAGTGGGGTGGCCTATGCACAAAGAGTTGTTAATTCGGAGAGGGAAAGTTTCGAAAGGCAAAATGGCTGGACGATAAAGACGATGGAGAGGGAGCCCTCACCCATCCGAGATGAGTATGCACCTGTAATTTTCTCGCAGGAAACCGTCTCTTACATTGAGTCAATTGACATGATGTCTGGGGAGGAGGACAGAGAAAACATTTTAAGGGCTAGGGCTACTGGAAAAGCAGTTCTGACCAGTCCATTCAGGCTGCTCGGTTCACACCATCTTGGTGTTGTGCTGACTTTCCCTGTTTACAAATCCAAGCTCCCTCCAAACCCAACTGTGGAGGAGCGCATAAAAGCAGCTTCCGGGTACCTTGGTGGAGCCTTTGATGTTGAGTCCCTTGTAGAGAATTTACTTGGGCAACTTGCTGGGAATCAGGCCATTATGGTTTATGTATATGATGTCACAAAATCTTCTGATCCCCTAATCATGTATGGTCACCAATATCAGCAAGATGGTGACATGTCTCTTCTGCATGAAAGTAAGCTTGATTTTGGGGATCCCTTCAGAAAGCATCAGATGATATGTAGATATCATCACAAGGCACCGACATCATGGACAGCAATTAACACTGCATTCTTATTCTTTGTGATTGGTTTATTAGTTGGGTATATCTTATATGGAGCTGCAATGCACATTGTCAAAGTCGAGGATGATTTCCGTGAAATGGAAGAATTAAAAGTTCGAGCAGAAGCTGCTGATGTTGCCAAGTCCCAGTTTCTTGCTACTGTTTCCCATGAAATTCGAACACCCATGAATGGAATCCTTGGAATGCTTGCCTTGCTTCTAGATACAGCTTTAAGTGGAACCCAGAGGGATTATGCTCAAACTGCTCAGGCCTGTGGAAAGGCACTGATAGCATTAATAAATGAGGTGCTTGACCGGGCAAAAATTGAAGCTGGAAGGTTGGAGCTGGAACAAGTTCCATTTGGCATTCGATCTATACTAGATGATGTCCTTTCTTTATTTTCTGAAAAGTCTAGAAATATGGGTATAGAGTTCACAGAACGAGGACATATATTTGTCAAAGTCCATCTAGCTGAGCCCTCGAAGGCCATGATTAATGGGAAATCAATGACTTACTTGAACGGAGGGTCAGATGAAGGTGTAAAAACATCTGATGGTCGTCAGTTTAAGACGTTAAGTGGATGTGAAGCAGCTGATGATCAGAATAGTTGGGATACTTTTAAGCATCTAATTGCTAATGAAGAACATAGAACTGATGTTTCCAGTAATGTTGCAGCCAATAATGAGGCTTCTGGACATGTCACTTTGATGGTATCTGTGGAAGATACAGGAATTGGTATACCATTATGTGCCCAAGAACGAGTATTTATGCCCTTCATGCAGGCAGACAGTTCAACCTCTAGACATTATGGAGGCACTGGTATCGGCTTGAGCATCAGTAAGTGTCTAGTTGAACTGATGGGTGGTCAGATAAACTTCACAAGTCGACCTCATGTTGGGAGCACATTTTCGTTCACGGCTAATTTTGGGAGGTGCAAAGAAAATGTAGTTAGTGACTTGAAAAAACCTAAGTTGGAAGATCTACCTTCTACCTTTAGAGGATTGAGATCGATACTAGTTGATGGAAAACTTGTGAGAGCTGCTGTAACAAAATACCACTTGAAGAGACTTGGAATCTTGGTAGAAGTTGTAAGTAGCATAAAGATGGCTGTTGCTTTTTGTGGAAGAAATGGTTCTGCGACATCTGGAAATATTGTCCCTCCAGATATAATTCTAGTAGAAAAGGATGCATGGATTTCTGGTGAAGAATGTGATCTCAACATAGAGCAATTGGAATGGAAACAGAACGGGCATATATATAAGCTGCCTAAGATGATCCTTCTTGCAACCAATTTCGGTGAAGGTGAATTTGATAAGGCAAAGGCAGCTGGTTTTACAGATACCGTGATTATGAAACCTTTGAGGGCTAGTATGGTAGCTGCATGTCTTCAACAGGTGCTTGGCATAGGGAAGAAGAGGCAACAGGGGAAGGAGCTGCCTAATGGATCTAATTTCCTTCAAAGCCTGCTCTCTGGTAAAAAAATCTTGGTGGTTGATGACAATATGGTAAACAGAAGAGTTGCTGAAGGTGCATTAAAAAAGTTCAGAGCTGATGTAGTGTGTGCTGAGAGTGGCAAAGCTGCATTGCATTTGCTTCAAATACCACACAACTTTGATGCTTGTTTCATGGATATTCAAATGCCTGAAATGGATGGTTTTGAGGCAACTCGTAGAATTCGGCAGATGGAGAGCAAGGCAAATGGGGAGGTAAATGGTGGATTGGAAGGAGTTGCAAGAAAGGGTGAGTGGCATTTGCCAGTATTAGCTATGACCGCTGATGTTATCCATGCCACTTATGATGAGTGCCTAAAATGTGGTATGGATGGATATGTCTCAAAGCCATTTGAGGAAGAGAATCTGTATCAAGCCGTGGCAAAGTTCTTCAAATCTAAACCAGAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0004721 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0008150 GO:0008152 GO:0008272 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009743 GO:0009744 GO:0009755 GO:0009784 GO:0009790 GO:0009884 GO:0009885 GO:0009987 GO:0009991 GO:0010015 GO:0010029 GO:0010033 GO:0010035 GO:0010086 GO:0012505 GO:0015698 GO:0016020 GO:0016036 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0016787 GO:0016788 GO:0016791 GO:0018106 GO:0018193 GO:0018202 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022622 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032870 GO:0033500 GO:0033554 GO:0034285 GO:0035556 GO:0036211 GO:0038023 GO:0042221 GO:0042578 GO:0042592 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048509 GO:0048580 GO:0048598 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071368 GO:0071470 GO:0071495 GO:0071496 GO:0071704 GO:0071944 GO:0072348 GO:0098542 GO:0099402 GO:0104004 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:1905392 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
CHASE HATPase_c HisKA Response_reg

Protein Analysis

969

Amino Acids

107.61

Weight (kDa)

6.41

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHASE PF03924 111 - 291 6.9e-38 CHASE domain
HisKA PF00512 382 - 447 1e-19 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 568 - 642 8.9e-17 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Receiver_CRE1 PF24896 664 - 803 1.4e-53 AHK4/CRE1/WOL first receiver domain
Response_reg PF00072 830 - 899 7.9e-14 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 747
AccB1I GGYRCC 2 cut(s) 747, 982
AccB7I CCANNNNNTGG 1 cut(s) 37
AccI GTMKAC 2 cut(s) 1744, 1891
AciI CCGC 1 cut(s) 2778
AclWI GGATC 5 cut(s) 851, 932, 945, 2275, 2458
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 5 cut(s) 10, 787, 1179, 2312, 2679
AcuI CTGAAG 2 cut(s) 928, 2550
AdeI CACNNNGTG 1 cut(s) 37
AfaI GTAC 1 cut(s) 749
AfiI CCNNNNNNNGG 6 cut(s) 37, 381, 718, 1105, 1196, 1901
AflIII ACRYGT 2 cut(s) 900, 1702
AhdI GACNNNNNGTC 1 cut(s) 565
AhlI ACTAGT 1 cut(s) 2020
AjnI CCWGG 1 cut(s) 285
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AloI GAACNNNNNNTCC 2 cut(s) 606, 638
Alw21I GWGCWC 1 cut(s) 1910
Alw26I GTCTC 4 cut(s) 544, 909, 2065, 2842
AlwI GGATC 5 cut(s) 851, 932, 945, 2275, 2458
AlwNI CAGNNNCTG 1 cut(s) 1133
AoxI GGCC 8 cut(s) 66, 93, 288, 383, 402, 816, 1275, 1491
ApoI RAATTY 5 cut(s) 10, 787, 1179, 2312, 2679
AseI ATTAAT 2 cut(s) 1301, 1500
Asp700I GAANNNNTTC 2 cut(s) 1359, 2137
Asp718I GGTACC 1 cut(s) 747
AspLEI GCGC 1 cut(s) 729
AspS9I GGNCC 1 cut(s) 66
AsuC2I CCSGG 2 cut(s) 745, 1322
AsuHPI GGTGA 8 cut(s) 151, 483, 869, 908, 2219, 2315, 2321, 2759
AsuII TTCGAA 2 cut(s) 444, 1183
BaeGI GKGCMC 1 cut(s) 1759
BaeI ACNNNNGTAYC 2 cut(s) 739, 772
BalI TGGCCA 1 cut(s) 290
BamHI GGATCC 1 cut(s) 937
BanI GGYRCC 2 cut(s) 747, 982
BanII GRGCYC 2 cut(s) 489, 1485
BbsI GAAGAC 1 cut(s) 2384
Bbv12I GWGCWC 1 cut(s) 1910
BceAI ACGGC 2 cut(s) 1938, 2858
BcgI CGANNNNNNTGC 2 cut(s) 1810, 1844
BciT130I CCWGG 1 cut(s) 287
BciVI GTATCC 1 cut(s) 1612
BclI TGATCA 3 cut(s) 226, 337, 1603
BcnI CCSGG 2 cut(s) 745, 1322
BcoDI GTCTC 4 cut(s) 544, 909, 2065, 2842
BcuI ACTAGT 1 cut(s) 2020
BfmI CTRYAG 1 cut(s) 97
BfuI GTATCC 1 cut(s) 1612
BglII AGATCT 1 cut(s) 1984
BlpI GCTNAGC 1 cut(s) 1479
Bme1390I CCNGG 3 cut(s) 287, 745, 1322
BmeRI GACNNNNNGTC 1 cut(s) 565
BmgT120I GGNCC 1 cut(s) 66
BmiI GGNNCC 8 cut(s) 67, 110, 486, 749, 760, 939, 984, 1246
BmrFI CCNGG 3 cut(s) 287, 745, 1322
BmrI ACTGGG 1 cut(s) 1147
BmsI GCATC 8 cut(s) 9, 114, 169, 961, 1639, 1848, 2182, 2611
BmuI ACTGGG 1 cut(s) 1147
BpiI GAAGAC 1 cut(s) 2384
BpmI CTGGAG 1 cut(s) 2151
Bpu10I CCTNAGC 1 cut(s) 1272
Bpu1102I GCTNAGC 1 cut(s) 1479
Bpu14I TTCGAA 2 cut(s) 444, 1183
BpuEI CTTGAG 2 cut(s) 302, 1855
BpuMI CCSGG 2 cut(s) 745, 1322
Bsa29I ATCGAT 1 cut(s) 2015
BsaBI GATNNNNATC 1 cut(s) 2011
BsaJI CCNNGG 4 cut(s) 285, 751, 1204, 2874
Bsc4I CCNNNNNNNGG 6 cut(s) 37, 381, 718, 1105, 1196, 1901
Bse1I ACTGG 6 cut(s) 616, 630, 1153, 1668, 1828, 2762
Bse3DI GCAATG 2 cut(s) 1074, 2588
Bse8I GATNNNNATC 1 cut(s) 2011
BseBI CCWGG 1 cut(s) 287
BseCI ATCGAT 1 cut(s) 2015
BseDI CCNNGG 4 cut(s) 285, 751, 1204, 2874
BseGI GGATG 8 cut(s) 184, 291, 495, 1096, 1592, 2197, 2662, 2833
BseJI GATNNNNATC 1 cut(s) 2011
BseLI CCNNNNNNNGG 6 cut(s) 37, 381, 718, 1105, 1196, 1901
BseMI GCAATG 2 cut(s) 1074, 2588
BseMII CTCAG 3 cut(s) 1286, 1470, 2562
BseNI ACTGG 6 cut(s) 616, 630, 1153, 1668, 1828, 2762
BseRI GAGGAG 2 cut(s) 590, 737
BseSI GKGCMC 1 cut(s) 1759
BseYI CCCAGC 1 cut(s) 806
BshFI GGCC 8 cut(s) 68, 95, 290, 385, 404, 818, 1277, 1493
BshNI GGYRCC 2 cut(s) 747, 982
BshVI ATCGAT 1 cut(s) 2015
BsiHKAI GWGCWC 1 cut(s) 1910
BsiSI CCGG 2 cut(s) 744, 1321
BslFI GGGAC 3 cut(s) 760, 1135, 2147
BslI CCNNNNNNNGG 6 cut(s) 37, 381, 718, 1105, 1196, 1901
BsmAI GTCTC 4 cut(s) 544, 909, 2065, 2842
BsmBI CGTCTC 1 cut(s) 544
BsmFI GGGAC 3 cut(s) 760, 1135, 2147
BsmI GAATGC 3 cut(s) 1013, 1215, 1371
BsnI GGCC 8 cut(s) 68, 95, 290, 385, 404, 818, 1277, 1493
Bsp119I TTCGAA 2 cut(s) 444, 1183
Bsp1286I GDGCHC 4 cut(s) 489, 1485, 1759, 1910
Bsp1720I GCTNAGC 1 cut(s) 1479
BspACI CCGC 1 cut(s) 2778
BspANI GGCC 8 cut(s) 68, 95, 290, 385, 404, 818, 1277, 1493
BspCNI CTCAG 3 cut(s) 1285, 1471, 2563
BspDI ATCGAT 1 cut(s) 2015
BspLI GGNNCC 8 cut(s) 67, 110, 486, 749, 760, 939, 984, 1246
BspPI GGATC 5 cut(s) 851, 932, 945, 2275, 2458
BspT104I TTCGAA 2 cut(s) 444, 1183
BspT107I GGYRCC 2 cut(s) 747, 982
BsrDI GCAATG 2 cut(s) 1074, 2588
BsrI ACTGG 6 cut(s) 616, 630, 1153, 1668, 1828, 2762
BssECI CCNNGG 4 cut(s) 285, 751, 1204, 2874
BssNAI GTATAC 1 cut(s) 1745
BssT1I CCWWGG 2 cut(s) 751, 1204
Bst1107I GTATAC 1 cut(s) 1745
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 5 cut(s) 538, 718, 1168, 1796, 2350
Bst6I CTCTTC 5 cut(s) 912, 2063, 2414, 2515, 2850
BstAPI GCANNNNNTGC 1 cut(s) 1133
BstBI TTCGAA 2 cut(s) 444, 1183
BstC8I GCNNGC 4 cut(s) 282, 1215, 1788, 2471
BstDEI CTNAG 6 cut(s) 212, 1272, 1479, 1974, 2274, 2571
BstDSI CCRYGG 1 cut(s) 2874
BstEII GGTNACC 1 cut(s) 875
BstENI CCTNNNNNAGG 1 cut(s) 379
BstF5I GGATG 8 cut(s) 184, 291, 495, 1096, 1592, 2197, 2662, 2833
BstHHI GCGC 1 cut(s) 729
BstMAI GTCTC 4 cut(s) 544, 909, 2065, 2842
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 5 cut(s) 223, 284, 904, 1706, 2391
BstPI GGTNACC 1 cut(s) 875
BstSCI CCNGG 3 cut(s) 285, 743, 1320
BstSFI CTRYAG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 1759
BstV2I GAAGAC 1 cut(s) 2384
BstX2I RGATCY 3 cut(s) 937, 1984, 2450
BstYI RGATCY 3 cut(s) 937, 1984, 2450
BstZ17I GTATAC 1 cut(s) 1745
Bsu15I ATCGAT 1 cut(s) 2015
BsuI GTATCC 1 cut(s) 1612
BsuRI GGCC 8 cut(s) 68, 95, 290, 385, 404, 818, 1277, 1493
BsuTUI ATCGAT 1 cut(s) 2015
BtgI CCRYGG 1 cut(s) 2874
BtsCI GGATG 8 cut(s) 184, 291, 495, 1096, 1592, 2197, 2662, 2833
BtsI GCAGTG 1 cut(s) 1008
BtsIMutI CAGTG 3 cut(s) 1008, 1289, 1821
Cac8I GCNNGC 4 cut(s) 282, 1215, 1788, 2471
CaiI CAGNNNCTG 1 cut(s) 1133
CfoI GCGC 1 cut(s) 729
Cfr13I GGNCC 1 cut(s) 66
ClaI ATCGAT 1 cut(s) 2015
Csp6I GTAC 1 cut(s) 748
CviQI GTAC 1 cut(s) 748
DdeI CTNAG 6 cut(s) 212, 1272, 1479, 1974, 2274, 2571
DraIII CACNNNGTG 1 cut(s) 37
DriI GACNNNNNGTC 1 cut(s) 565
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 5 cut(s) 912, 2063, 2414, 2515, 2850
Eam1105I GACNNNNNGTC 1 cut(s) 565
EarI CTCTTC 5 cut(s) 912, 2063, 2414, 2515, 2850
Eco130I CCWWGG 2 cut(s) 751, 1204
Eco147I AGGCCT 3 cut(s) 95, 385, 1277
Eco24I GRGCYC 2 cut(s) 489, 1485
Eco32I GATATC 1 cut(s) 971
Eco57I CTGAAG 2 cut(s) 928, 2550
Eco91I GGTNACC 1 cut(s) 875
EcoNI CCTNNNNNAGG 1 cut(s) 379
EcoO65I GGTNACC 1 cut(s) 875
EcoRI GAATTC 1 cut(s) 2679
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 971
EcoT14I CCWWGG 2 cut(s) 751, 1204
EcoT22I ATGCAT 1 cut(s) 2197
EcoT38I GRGCYC 2 cut(s) 489, 1485
ErhI CCWWGG 2 cut(s) 751, 1204
Esp3I CGTCTC 1 cut(s) 544
FaqI GGGAC 3 cut(s) 760, 1135, 2147
FbaI TGATCA 3 cut(s) 226, 337, 1603
FblI GTMKAC 2 cut(s) 1744, 1891
FokI GGATG 8 cut(s) 191, 278, 482, 1103, 1599, 2204, 2669, 2840
FriOI GRGCYC 2 cut(s) 489, 1485
GlaI GCGC 1 cut(s) 728
GsaI CCCAGC 1 cut(s) 810
GsuI CTGGAG 1 cut(s) 2151
HaeIII GGCC 8 cut(s) 68, 95, 290, 385, 404, 818, 1277, 1493
HapII CCGG 2 cut(s) 744, 1321
HhaI GCGC 1 cut(s) 729
Hin6I GCGC 1 cut(s) 727
HinP1I GCGC 1 cut(s) 727
HincII GTYRAC 1 cut(s) 1892
HindII GTYRAC 1 cut(s) 1892
HindIII AAGCTT 2 cut(s) 116, 923
HinfI GANTC 8 cut(s) 133, 551, 773, 811, 1200, 2079, 2860, 2903
HpaII CCGG 2 cut(s) 744, 1321
HphI GGTGA 8 cut(s) 151, 483, 869, 908, 2219, 2315, 2321, 2759
Hpy166II GTNNAC 7 cut(s) 653, 688, 1440, 1745, 1892, 1920, 2515
Hpy188III TCNNGA 9 cut(s) 319, 341, 379, 1226, 1419, 1698, 1806, 2151, 2168
Hpy8I GTNNAC 7 cut(s) 653, 688, 1440, 1745, 1892, 1920, 2515
HpyCH4III ACNGT 5 cut(s) 538, 718, 1168, 1796, 2350
HpyCH4IV ACGT 1 cut(s) 1577
HpyF3I CTNAG 6 cut(s) 212, 1272, 1479, 1974, 2274, 2571
HpySE526I ACGT 1 cut(s) 1577
HspAI GCGC 1 cut(s) 727
KpnI GGTACC 1 cut(s) 751
Ksp22I TGATCA 3 cut(s) 226, 337, 1603
LmnI GCTCC 8 cut(s) 484, 705, 724, 758, 1061, 1348, 1905, 2437
LweI GCATC 8 cut(s) 9, 114, 169, 961, 1639, 1848, 2182, 2611
MaeII ACGT 1 cut(s) 1577
MaeIII GTNAC 6 cut(s) 841, 875, 896, 1705, 1958, 2050
MfeI CAATTG 3 cut(s) 333, 555, 2234
MflI RGATCY 3 cut(s) 937, 1984, 2450
MhlI GDGCHC 4 cut(s) 489, 1485, 1759, 1910
MlsI TGGCCA 1 cut(s) 290
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 2 cut(s) 560, 782
MmeI TCCRAC 2 cut(s) 1326, 1959
Mox20I TGGCCA 1 cut(s) 290
Mph1103I ATGCAT 1 cut(s) 2197
MroXI GAANNNNTTC 2 cut(s) 1359, 2137
MscI TGGCCA 1 cut(s) 290
MslI CAYNNNNRTG 4 cut(s) 279, 663, 1712, 2108
Msp20I TGGCCA 1 cut(s) 290
MspA1I CMGCKG 3 cut(s) 1598, 2333, 2780
MspI CCGG 2 cut(s) 744, 1321
MspR9I CCNGG 3 cut(s) 287, 745, 1322
MunI CAATTG 3 cut(s) 333, 555, 2234
Mva1269I GAATGC 3 cut(s) 1013, 1215, 1371
MvaI CCWGG 1 cut(s) 287
NciI CCSGG 2 cut(s) 745, 1322
NlaIV GGNNCC 8 cut(s) 67, 110, 486, 749, 760, 939, 984, 1246
NmuCI GTSAC 5 cut(s) 841, 875, 896, 1705, 1958
NsiI ATGCAT 1 cut(s) 2197
NspI RCATGY 5 cut(s) 223, 284, 904, 1706, 2391
NspV TTCGAA 2 cut(s) 444, 1183
PaeI GCATGC 1 cut(s) 284
PceI AGGCCT 3 cut(s) 95, 385, 1277
PciI ACATGT 2 cut(s) 900, 1702
PcsI WCGNNNNNNNCGW 1 cut(s) 470
PctI GAATGC 3 cut(s) 1013, 1215, 1371
PdmI GAANNNNTTC 2 cut(s) 1359, 2137
PfeI GAWTC 5 cut(s) 133, 811, 1200, 2079, 2860
PflMI CCANNNNNTGG 1 cut(s) 37
PleI GAGTC 2 cut(s) 559, 781
PpsI GAGTC 2 cut(s) 559, 781
PscI ACATGT 2 cut(s) 900, 1702
PshBI ATTAAT 2 cut(s) 1301, 1500
Psp6I CCWGG 1 cut(s) 285
PspEI GGTNACC 1 cut(s) 875
PspFI CCCAGC 1 cut(s) 806
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 8 cut(s) 67, 110, 486, 749, 760, 939, 984, 1246
PspPI GGNCC 1 cut(s) 66
PstNI CAGNNNCTG 1 cut(s) 1133
PsuI RGATCY 3 cut(s) 937, 1984, 2450
PvuII CAGCTG 2 cut(s) 1598, 2333
RsaI GTAC 1 cut(s) 749
RsaNI GTAC 1 cut(s) 748
RseI CAYNNNNRTG 4 cut(s) 279, 663, 1712, 2108
SalI GTCGAC 1 cut(s) 1890
Sau96I GGNCC 1 cut(s) 66
SchI GAGTC 2 cut(s) 560, 782
ScrFI CCNGG 3 cut(s) 287, 745, 1322
SduI GDGCHC 4 cut(s) 489, 1485, 1759, 1910
SfaNI GCATC 8 cut(s) 9, 114, 169, 961, 1639, 1848, 2182, 2611
SfcI CTRYAG 1 cut(s) 97
SfuI TTCGAA 2 cut(s) 444, 1183
SmiMI CAYNNNNRTG 4 cut(s) 279, 663, 1712, 2108
SmlI CTYRAG 2 cut(s) 317, 1834
SmoI CTYRAG 2 cut(s) 317, 1834
SpeI ACTAGT 1 cut(s) 2020
SphI GCATGC 1 cut(s) 284
SseBI AGGCCT 3 cut(s) 95, 385, 1277
SsiI CCGC 1 cut(s) 2778
SspI AATATT 1 cut(s) 2158
StuI AGGCCT 3 cut(s) 95, 385, 1277
StyD4I CCNGG 3 cut(s) 285, 743, 1320
StyI CCWWGG 2 cut(s) 751, 1204
TaaI ACNGT 5 cut(s) 538, 718, 1168, 1796, 2350
TaiI ACGT 1 cut(s) 1580
TaqI TCGA 9 cut(s) 378, 444, 1086, 1123, 1183, 1375, 1487, 1891, 2015
TfiI GAWTC 5 cut(s) 133, 811, 1200, 2079, 2860
TscAI CASTG 3 cut(s) 1015, 1296, 1828
TseFI GTSAC 5 cut(s) 841, 875, 896, 1705, 1958
Tsp45I GTSAC 5 cut(s) 841, 875, 896, 1705, 1958
TspDTI ATGAA 9 cut(s) 299, 930, 1191, 1208, 1554, 1659, 1771, 2372, 2620
TspGWI ACGGA 2 cut(s) 1088, 1542
TspRI CASTG 3 cut(s) 1015, 1296, 1828
Van91I CCANNNNNTGG 1 cut(s) 37
VspI ATTAAT 2 cut(s) 1301, 1500
XagI CCTNNNNNAGG 1 cut(s) 379
XapI RAATTY 5 cut(s) 10, 787, 1179, 2312, 2679
XbaI TCTAGA 3 cut(s) 1225, 1418, 1805
XceI RCATGY 5 cut(s) 223, 284, 904, 1706, 2391
XmiI GTMKAC 2 cut(s) 1744, 1891
XmnI GAANNNNTTC 2 cut(s) 1359, 2137
Zsp2I ATGCAT 1 cut(s) 2197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.