Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006236

Physical Location & Seq

Genomic Coordinates Reverse (-)

1342423 .. 1344825

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02010.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGACCAAGTCCAAGAATTTCCTCAACAATCTCGTCAAAACTTTTGGGTTCGCCCCCAGCAAAGGCGGACAGAACGAAGAGGACTTGGAGAAGATTGCTCAGCAGGAACAGAAGCATTTCCCATTCGAAACTTTGGCTGCCGCTACGAAAAATTTCCACCCCAGTCATAAGCTCGGAGAAGGCGGTTTCGGACCCGTTTTTAAGGGAAAGTTGGAGGATGGGAGAGAAATTGCGGTGAAGAAGTTGTCACAAAGTTCAAATCAAGGAAAGAAAGAGTTCATGAACGAGGCCAAGTTGCTAGCTCGTGTGCAGCACCGTAATGTTGTGAATTTGTTGGGCAATTGTGCACACGGGGTAGAGAAACTACTTGTTTATGAGTATGTCTTAAACGAGAGCCTCGACAAGTTTCTCTTCAAATCAAATAGAAGGGAGGAGCTTGACTGGAAGCGGAGGTTTGATATAATATGCGGTGTTGCAAAGGGCTTGCTTTACCTTCATGAACATTCACATAAGTGCATTATACACCGCGACATCAAGGCCAGTAATATTCTACTAGATGATAAATGGGCCCCCAAGATTGCTGATTTTGGCATGGCTCGCCTATTTCCCGAGGATCAGACGCACGTCAATACCCGCGTTGCTGGTACCAAGTATGGTGTCTTGTGCAATAAGTTTTATTTCTTAAGTGGGTGGGTGGTTATATGGCTCCCGAGTATGTTATGCACGGGCATTTATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

247

Amino Acids

28.08

Weight (kDa)

9.25

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70740 AT1G70740
fragaria_vesca	FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050
malus_domestica	MD13G1021200.v1.1 MD16G1022500.v1.1
prunus_persica	Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1
pyrus_communis	pycom13g02010 pycom16g01980
rosa_chinensis	RchiOBHm_Chr4g0443541
rosa_laevigata	RLG00000005918
rosa_multiflora	Rmu_sc0000648.1_g000006 Rmu_sc0001118.1_g000023
rosa_roxburghii	Rroxscaffold_5G00384090
rosa_samantha	Rh4AG402800 Rh4BG414500 Rh4CG430100 Rh4DG410000
rosa_wichuraiana	Rw4G034730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	644
AccB1I	GGYRCC	1 cut(s)	644
AccII	CGCG	2 cut(s)	528, 636
AciI	CCGC	8 cut(s)	66, 141, 183, 233, 448, 468, 526, 634
AclWI	GGATC	1 cut(s)	621
AcsI	RAATTY	3 cut(s)	16, 151, 328
AfaI	GTAC	1 cut(s)	646
AfiI	CCNNNNNNNGG	1 cut(s)	62
AflII	CTTAAG	1 cut(s)	682
AgsI	TTSAA	2 cut(s)	258, 415
AjiI	CACGTC	1 cut(s)	625
AleI	CACNNNNGTG	1 cut(s)	511
AluBI	AGCT	3 cut(s)	172, 302, 436
AluI	AGCT	3 cut(s)	172, 302, 436
Alw21I	GWGCWC	1 cut(s)	349
Alw44I	GTGCAC	1 cut(s)	345
AlwI	GGATC	1 cut(s)	621
Ama87I	CYCGRG	2 cut(s)	608, 709
AoxI	GGCC	3 cut(s)	288, 537, 567
ApaI	GGGCCC	1 cut(s)	571
ApaLI	GTGCAC	1 cut(s)	345
ApeKI	GCWGC	2 cut(s)	137, 310
ApoI	RAATTY	3 cut(s)	16, 151, 328
Asp700I	GAANNNNTTC	3 cut(s)	116, 152, 275
Asp718I	GGTACC	1 cut(s)	644
AspS9I	GGNCC	3 cut(s)	191, 567, 568
AsuHPI	GGTGA	1 cut(s)	247
AsuII	TTCGAA	1 cut(s)	126
AsuNHI	GCTAGC	1 cut(s)	298
AvaI	CYCGRG	2 cut(s)	608, 709
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	2 cut(s)	349, 571
BanI	GGYRCC	1 cut(s)	644
BanII	GRGCYC	1 cut(s)	571
BauI	CACGAG	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	124, 322
BccI	CCATC	1 cut(s)	212
BfaI	CTAG	2 cut(s)	299, 554
BfrI	CTTAAG	1 cut(s)	682
BisI	GCNGC	3 cut(s)	138, 141, 311
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	3 cut(s)	139, 142, 312
Bme18I	GGWCC	1 cut(s)	191
BmeT110I	CYCGRG	2 cut(s)	608, 709
BmgBI	CACGTC	1 cut(s)	625
BmgT120I	GGNCC	3 cut(s)	191, 567, 568
BmiI	GGNNCC	5 cut(s)	193, 569, 570, 646, 707
BmrI	ACTGGG	1 cut(s)	156
BmtI	GCTAGC	1 cut(s)	302
BmuI	ACTGGG	1 cut(s)	156
BoxI	GACNNNNGTC	1 cut(s)	623
Bpu1102I	GCTNAGC	1 cut(s)	99
Bpu14I	TTCGAA	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	609
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	3 cut(s)	162, 446, 540
BseDI	CCNNGG	1 cut(s)	609
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	3 cut(s)	162, 446, 540
BseRI	GAGGAG	1 cut(s)	446
BseSI	GKGCMC	2 cut(s)	349, 571
BseXI	GCAGC	2 cut(s)	124, 322
BseYI	CCCAGC	1 cut(s)	56
BsgI	GTGCAG	1 cut(s)	329
Bsh1236I	CGCG	2 cut(s)	528, 636
BshFI	GGCC	3 cut(s)	290, 539, 569
BshNI	GGYRCC	1 cut(s)	644
BsiHKAI	GWGCWC	1 cut(s)	349
BsiHKCI	CYCGRG	2 cut(s)	608, 709
BslI	CCNNNNNNNGG	1 cut(s)	62
BsnI	GGCC	3 cut(s)	290, 539, 569
BsoBI	CYCGRG	2 cut(s)	608, 709
Bsp119I	TTCGAA	1 cut(s)	126
Bsp120I	GGGCCC	1 cut(s)	567
Bsp1286I	GDGCHC	2 cut(s)	349, 571
Bsp143I	GATC	1 cut(s)	613
Bsp1720I	GCTNAGC	1 cut(s)	99
BspACI	CCGC	8 cut(s)	66, 141, 183, 233, 448, 468, 526, 634
BspANI	GGCC	3 cut(s)	290, 539, 569
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	2 cut(s)	528, 636
BspHI	TCATGA	2 cut(s)	279, 496
BspLI	GGNNCC	5 cut(s)	193, 569, 570, 646, 707
BspOI	GCTAGC	1 cut(s)	302
BspPI	GGATC	1 cut(s)	621
BspT104I	TTCGAA	1 cut(s)	126
BspT107I	GGYRCC	1 cut(s)	644
BspTI	CTTAAG	1 cut(s)	682
BsrI	ACTGG	3 cut(s)	162, 446, 540
BssECI	CCNNGG	1 cut(s)	609
BssMI	GATC	1 cut(s)	613
BssSI	CACGAG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	2 cut(s)	72, 416
BstAFI	CTTAAG	1 cut(s)	682
BstBI	TTCGAA	1 cut(s)	126
BstC8I	GCNNGC	3 cut(s)	300, 485, 598
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	2 cut(s)	528, 636
BstKTI	GATC	1 cut(s)	616
BstMBI	GATC	1 cut(s)	613
BstMWI	GCNNNNNNNGC	1 cut(s)	597
BstPAI	GACNNNNGTC	1 cut(s)	623
BstSLI	GKGCMC	2 cut(s)	349, 571
BstUI	CGCG	2 cut(s)	528, 636
BstV1I	GCAGC	2 cut(s)	124, 322
BsuRI	GGCC	3 cut(s)	290, 539, 569
BtrI	CACGTC	1 cut(s)	625
BtsCI	GGATG	1 cut(s)	223
Cac8I	GCNNGC	3 cut(s)	300, 485, 598
CciI	TCATGA	2 cut(s)	279, 496
Cfr13I	GGNCC	3 cut(s)	191, 567, 568
CseI	GACGC	1 cut(s)	628
Csp6I	GTAC	1 cut(s)	645
CviAII	CATG	3 cut(s)	280, 497, 592
CviQI	GTAC	1 cut(s)	645
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	1 cut(s)	615
DpnII	GATC	1 cut(s)	613
Eam1104I	CTCTTC	2 cut(s)	72, 416
EarI	CTCTTC	2 cut(s)	72, 416
EciI	GGCGGA	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	571
Eco47I	GGWCC	1 cut(s)	191
Eco88I	CYCGRG	2 cut(s)	608, 709
EcoO109I	RGGNCCY	1 cut(s)	568
EcoT38I	GRGCYC	1 cut(s)	571
FaeI	CATG	3 cut(s)	283, 500, 595
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FatI	CATG	3 cut(s)	279, 496, 591
FauI	CCCGC	1 cut(s)	641
Fnu4HI	GCNGC	3 cut(s)	138, 141, 311
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	3 cut(s)	138, 141, 311
FspBI	CTAG	2 cut(s)	299, 554
GluI	GCNGC	3 cut(s)	138, 141, 311
GsaI	CCCAGC	1 cut(s)	60
HaeIII	GGCC	3 cut(s)	290, 539, 569
HgaI	GACGC	1 cut(s)	628
Hin1II	CATG	3 cut(s)	283, 500, 595
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	3 cut(s)	176, 191, 618
Hpy188III	TCNNGA	4 cut(s)	280, 497, 608, 709
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	3 cut(s)	173, 420, 503
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	6 cut(s)	310, 347, 476, 516, 666, 723
HpyF10VI	GCNNNNNNNGC	1 cut(s)	597
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	3 cut(s)	283, 500, 595
KpnI	GGTACC	1 cut(s)	648
Kzo9I	GATC	1 cut(s)	613
LmnI	GCTCC	2 cut(s)	433, 711
LpnPI	CCDG	6 cut(s)	70, 89, 175, 427, 553, 627
Lsp1109I	GCAGC	2 cut(s)	124, 322
MaeI	CTAG	2 cut(s)	299, 554
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	1 cut(s)	615
MboI	GATC	1 cut(s)	613
MboII	GAAGA	4 cut(s)	89, 103, 250, 403
MfeI	CAATTG	1 cut(s)	340
MhlI	GDGCHC	2 cut(s)	349, 571
MluCI	AATT	5 cut(s)	16, 151, 228, 328, 340
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	8 cut(s)	32, 73, 208, 280, 407, 424, 444, 604
MroXI	GAANNNNTTC	3 cut(s)	116, 152, 275
MseI	TTAA	3 cut(s)	201, 386, 683
MslI	CAYNNNNRTG	2 cut(s)	318, 511
MspCI	CTTAAG	1 cut(s)	682
MunI	CAATTG	1 cut(s)	340
MvnI	CGCG	2 cut(s)	528, 636
MwoI	GCNNNNNNNGC	1 cut(s)	597
NdeII	GATC	1 cut(s)	613
NheI	GCTAGC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	283, 500, 595
NlaIV	GGNNCC	5 cut(s)	193, 569, 570, 646, 707
NmuCI	GTSAC	1 cut(s)	246
NspV	TTCGAA	1 cut(s)	126
OliI	CACNNNNGTG	1 cut(s)	511
PagI	TCATGA	2 cut(s)	279, 496
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PdmI	GAANNNNTTC	3 cut(s)	116, 152, 275
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	139, 142, 312
PshAI	GACNNNNGTC	1 cut(s)	623
PspFI	CCCAGC	1 cut(s)	56
PspN4I	GGNNCC	5 cut(s)	193, 569, 570, 646, 707
PspOMI	GGGCCC	1 cut(s)	567
PspPI	GGNCC	3 cut(s)	191, 567, 568
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	646
RsaNI	GTAC	1 cut(s)	645
RseI	CAYNNNNRTG	2 cut(s)	318, 511
SaqAI	TTAA	3 cut(s)	201, 386, 683
SatI	GCNGC	3 cut(s)	138, 141, 311
Sau3AI	GATC	1 cut(s)	613
Sau96I	GGNCC	3 cut(s)	191, 567, 568
SduI	GDGCHC	2 cut(s)	349, 571
SetI	ASST	6 cut(s)	174, 304, 438, 455, 495, 627
SfuI	TTCGAA	1 cut(s)	126
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	2 cut(s)	318, 511
SmlI	CTYRAG	1 cut(s)	682
SmoI	CTYRAG	1 cut(s)	682
Sse9I	AATT	5 cut(s)	16, 151, 228, 328, 340
SsiI	CCGC	8 cut(s)	66, 141, 183, 233, 448, 468, 526, 634
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	2 cut(s)	299, 554
TaaI	ACNGT	1 cut(s)	317
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	2 cut(s)	126, 399
TasI	AATT	5 cut(s)	16, 151, 228, 328, 340
TauI	GCSGC	1 cut(s)	143
Tru1I	TTAA	3 cut(s)	201, 386, 683
Tru9I	TTAA	3 cut(s)	201, 386, 683
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	2 cut(s)	137, 310
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	4 cut(s)	268, 296, 485, 513
Tth111I	GACNNNGTC	1 cut(s)	7
Vha464I	CTTAAG	1 cut(s)	682
VneI	GTGCAC	1 cut(s)	345
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	3 cut(s)	16, 151, 328
XmnI	GAANNNNTTC	3 cut(s)	116, 152, 275
XspI	CTAG	2 cut(s)	299, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.