Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006236

Physical Location & Seq

Genomic Coordinates Reverse (-)

56219436 .. 56222696

Gene Structure 3261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG414500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGACCAAGTCCAAGAAATTCCTCAACAATCTCATCAAAACCTTCGGGTTCGGCTCAAGCAAAGATGGCCATAATGAAGAGGACTTGGAGAAAATTGCTCAACAGGAACAGAAGATTAGTACTAAGTTTATGGCATACAAGTTGTACAAGAAGGGGAGAAGCTTGGAGATGATGGACCCAACATTAGCACCATCTGCGGTCACTGATCAAGTAGCAATGTGTATCCAGATAGGGTTATTATGCATACAAGGCGACCCCCAGATCAGACCCACCATGCATCGCGTGGTCGTGATCCTATCAAAGAAACCGAGCAATCTTGAAGAGCCAAGTAGACCCGGAATACCAGGATCAAGATACAGAAGATCTCACAGACCAGCTGGTTCATCTTCCACTGCTGGGACTTCTGGTGAATCAAATTCTCATACATTCGGATCGAGCTTTACCGTAACTGGAACCAGTTCGGCAACCCAAGTTGTACAAGACCGGGGGAAACGTCCTATGGAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

169

Amino Acids

18.51

Weight (kDa)

9.76

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70740 AT1G70740
fragaria_vesca	FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050
malus_domestica	MD13G1021200.v1.1 MD16G1022500.v1.1
prunus_persica	Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1
pyrus_communis	pycom13g02010 pycom16g01980
rosa_chinensis	RchiOBHm_Chr4g0443541
rosa_laevigata	RLG00000005918
rosa_multiflora	Rmu_sc0000648.1_g000006 Rmu_sc0001118.1_g000023
rosa_roxburghii	Rroxscaffold_5G00384090
rosa_samantha	Rh4AG402800 Rh4BG414500 Rh4CG430100 Rh4DG410000
rosa_wichuraiana	Rw4G034730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	331
AccII	CGCG	1 cut(s)	282
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	3 cut(s)	286, 355, 439
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	2 cut(s)	17, 415
AfaI	GTAC	3 cut(s)	121, 146, 477
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgsI	TTSAA	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	3 cut(s)	162, 377, 438
AluI	AGCT	3 cut(s)	162, 377, 438
AlwI	GGATC	3 cut(s)	286, 355, 439
AoxI	GGCC	1 cut(s)	67
ApoI	RAATTY	2 cut(s)	17, 415
Asp700I	GAANNNNTTC	1 cut(s)	457
AspS9I	GGNCC	1 cut(s)	175
AsuC2I	CCSGG	2 cut(s)	336, 485
AsuHPI	GGTGA	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	69
BccI	CCATC	3 cut(s)	59, 166, 199
BciT130I	CCWGG	1 cut(s)	345
BciVI	GTATCC	1 cut(s)	233
BclI	TGATCA	1 cut(s)	205
BcnI	CCSGG	2 cut(s)	336, 485
BfuI	GTATCC	1 cut(s)	233
BglII	AGATCT	1 cut(s)	362
BmcAI	AGTACT	1 cut(s)	121
Bme1390I	CCNGG	3 cut(s)	336, 345, 485
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	2 cut(s)	177, 454
BmrFI	CCNGG	3 cut(s)	336, 345, 485
BmsI	GCATC	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	40
BpuMI	CCSGG	2 cut(s)	336, 485
BsaJI	CCNNGG	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	2 cut(s)	454, 456
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMI	GCAATG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	454, 456
BseYI	CCCAGC	1 cut(s)	395
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	336, 484
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmFI	GGGAC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	69
Bsp1407I	TGTACA	2 cut(s)	144, 475
Bsp143I	GATC	6 cut(s)	205, 261, 291, 347, 362, 431
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	177, 454
BspPI	GGATC	3 cut(s)	286, 355, 439
BspQI	GCTCTTC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	222
BsrGI	TGTACA	2 cut(s)	144, 475
BsrI	ACTGG	2 cut(s)	454, 456
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	6 cut(s)	205, 261, 291, 347, 362, 431
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	2 cut(s)	72, 315
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstAUI	TGTACA	2 cut(s)	144, 475
BstDEI	CTNAG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	282
BstKTI	GATC	6 cut(s)	208, 264, 294, 350, 365, 434
BstMBI	GATC	6 cut(s)	205, 261, 291, 347, 362, 431
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 194, 249
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	3 cut(s)	334, 343, 483
BstUI	CGCG	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BsuI	GTATCC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	263
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	2 cut(s)	201, 390
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	3 cut(s)	120, 145, 476
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	6 cut(s)	54, 69, 162, 325, 377, 438
CviKI_1	RGCY	6 cut(s)	54, 69, 162, 325, 377, 438
CviQI	GTAC	3 cut(s)	120, 145, 476
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	6 cut(s)	207, 263, 293, 349, 364, 433
DpnII	GATC	6 cut(s)	205, 261, 291, 347, 362, 431
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	2 cut(s)	72, 315
EarI	CTCTTC	2 cut(s)	72, 315
Eco47I	GGWCC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	343
EcoT22I	ATGCAT	2 cut(s)	245, 279
FaeI	CATG	1 cut(s)	277
FaiI	YATR	8 cut(s)	72, 131, 136, 241, 245, 275, 423, 500
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	1 cut(s)	273
FbaI	TGATCA	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	331
GsaI	CCCAGC	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	2 cut(s)	336, 484
Hin1II	CATG	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	2 cut(s)	336, 484
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	2 cut(s)	266, 431
Hpy188III	TCNNGA	4 cut(s)	226, 289, 317, 351
Hpy8I	GTNNAC	1 cut(s)	332
HpyAV	CCTTC	2 cut(s)	52, 145
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	2 cut(s)	243, 277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 194, 249
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	6 cut(s)	205, 261, 291, 347, 362, 431
LguI	GCTCTTC	1 cut(s)	315
LweI	GCATC	1 cut(s)	286
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	2 cut(s)	199, 445
MalI	GATC	6 cut(s)	207, 263, 293, 349, 364, 433
MboI	GATC	6 cut(s)	205, 261, 291, 347, 362, 431
MboII	GAAGA	5 cut(s)	89, 124, 332, 372, 378
MflI	RGATCY	1 cut(s)	362
MlsI	TGGCCA	1 cut(s)	69
MluCI	AATT	3 cut(s)	17, 93, 415
MluNI	TGGCCA	1 cut(s)	69
MnlI	CCTC	2 cut(s)	32, 73
Mox20I	TGGCCA	1 cut(s)	69
Mph1103I	ATGCAT	2 cut(s)	245, 279
MroXI	GAANNNNTTC	1 cut(s)	457
MscI	TGGCCA	1 cut(s)	69
Msp20I	TGGCCA	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	2 cut(s)	336, 484
MspR9I	CCNGG	3 cut(s)	336, 345, 485
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	66, 194, 249
NciI	CCSGG	2 cut(s)	336, 485
NdeII	GATC	6 cut(s)	205, 261, 291, 347, 362, 431
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	2 cut(s)	177, 454
NmuCI	GTSAC	1 cut(s)	199
NsiI	ATGCAT	2 cut(s)	245, 279
PciSI	GCTCTTC	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	410
PflFI	GACNNNGTC	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	2 cut(s)	177, 454
PspPI	GGNCC	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	362
PsyI	GACNNNGTC	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	3 cut(s)	121, 146, 477
RsaNI	GTAC	3 cut(s)	120, 145, 476
SapI	GCTCTTC	1 cut(s)	315
Sau3AI	GATC	6 cut(s)	205, 261, 291, 347, 362, 431
Sau96I	GGNCC	1 cut(s)	175
ScaI	AGTACT	1 cut(s)	121
ScrFI	CCNGG	3 cut(s)	336, 345, 485
SetI	ASST	5 cut(s)	44, 164, 379, 440, 496
SfaNI	GCATC	1 cut(s)	286
SinI	GGWCC	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	3 cut(s)	17, 93, 415
SsiI	CCGC	1 cut(s)	197
StyD4I	CCNGG	3 cut(s)	334, 343, 483
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	1 cut(s)	434
TasI	AATT	3 cut(s)	17, 93, 415
TatI	WGTACW	3 cut(s)	119, 144, 475
TfiI	GAWTC	1 cut(s)	410
TscAI	CASTG	2 cut(s)	208, 397
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	90, 372
TspRI	CASTG	2 cut(s)	208, 397
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	2 cut(s)	17, 415
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	457
ZrmI	AGTACT	1 cut(s)	121
Zsp2I	ATGCAT	2 cut(s)	245, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.