Rw4G034730

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
61717726 .. 61722113
4388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G034730.1

Sequence Viewer

Length: 1176 bp
ATGACCAAGTCCAAGAACTTCCTCAACAATCTCATCAAAACCTTCGGGTTCGGCTCAAGCAAACATGGCCATAATGAAGAGGACTTGGAGAAAATTGCTCAACAGGAACAGAAGGTTTTCACTTTTGAGACTTTGGTGGCTGCTACCAAGGATTTTCACCCCGATAATAAGCTCGGACAAGGCGGATTTGGGCCGGTTTACAAGGGGAGATTGCCTGATGGTAGAGCTATTGCAGTGAAGAAGCTGTCACAAAGTTCAAGTCAAGGAAAAAAAGAGTTCATGAACGAAGCCAAGTTGTTGGCTCGCGTGCAACACCGCAATGTTGTGAATTTATTGGGCTATTGTGCTCATGGGGGAGAGAAACTACTTGTATATGAATATGTCGTACATGAGAGCGTTGACAAGCTTCTCTTCAAACCAGATAGACGACCGGAGCTTGACTGGAAGCGGAGGTATGATATAATATGTGGCGTTGCAAAAGGTTTGCTTTATCTTCATGAAGACTCGCACAATCGTATTATACACAGAGACATCAAGGCCAGCAACATTCTGCTTGATGATAAATGGGTCCCCAAGATTGCTGATTTTGGCATGGCTCGTCTCTTTCCTGAAGATCAAACGCACGTTAATACGCGTGTTGCTGGGACCAATGGGTATATGGCTCCAGAGTATGTCATGCATGGACATTTATCGGAGAAGGCCGATGTTTTTAGCTTTGGTGTGTTGGTTTTGGAGCTTATCAGCGGCCAAAGGAATTCGTCATTCAACTTAAATGTTGAAGCGCAGAGCCTTCTCGATTGGGCATACAAGCTGTACAAGAAGGGGAGAAGCTTGGAGATGATGGACCCAACATTAGCACCATCCGCGGTCACTGATCAAGTAGCAATGTGTATCCAGATAGGGTTATTATGCATACAAGGCGACCCCCAGATCAGACCCACCATGCATCGCGTGGTCGTGATCCTATCAAAGAAACCGAGCAATCTTGAAGAGCCAACTAGACCTGGAATACCAGGATCAAGATACAGAAGAGCTCACAGACCAGCATCATCCTCCACTGCTGGGACTTCTGGTGAATCAAATTCTCATACATTCGGATCGAGCTTTACCGCAACTGGAACCAGTTCAGCAACCCGAGTTGTACAAGACCGGGGGAAACGTCCAATGGAGAGTTAG

Protein Analysis

391

Amino Acids

43.65

Weight (kDa)

9.34

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 53 - 318 3.8e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 55 - 320 3.7e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 306, 634, 866, 951
AciI CCGC 7 cut(s) 183, 316, 448, 744, 864, 866, 1110
AclWI GGATC 3 cut(s) 955, 1024, 1105
AcoI YGGCCR 2 cut(s) 67, 745
AcsI RAATTY 3 cut(s) 328, 754, 1081
AcuI CTGAAG 1 cut(s) 630
AfaI GTAC 3 cut(s) 387, 815, 1143
AfiI CCNNNNNNNGG 1 cut(s) 1062
AflIII ACRYGT 1 cut(s) 632
AgsI TTSAA 5 cut(s) 258, 415, 766, 779, 989
AjnI CCWGG 2 cut(s) 1003, 1012
Alw21I GWGCWC 2 cut(s) 349, 1036
Alw26I GTCTC 3 cut(s) 122, 522, 605
AlwI GGATC 3 cut(s) 955, 1024, 1105
Ama87I CYCGRG 1 cut(s) 1134
AoxI GGCC 5 cut(s) 67, 191, 537, 699, 745
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 3 cut(s) 328, 754, 1081
ArsI GACNNNNNNTTYG 2 cut(s) 244, 276
Asp700I GAANNNNTTC 2 cut(s) 116, 1123
AspLEI GCGC 1 cut(s) 784
AspS9I GGNCC 4 cut(s) 191, 568, 645, 844
AsuC2I CCSGG 1 cut(s) 1151
AsuHPI GGTGA 2 cut(s) 149, 1085
AvaI CYCGRG 1 cut(s) 1134
AvaII GGWCC 3 cut(s) 568, 645, 844
BalI TGGCCA 1 cut(s) 69
BanII GRGCYC 1 cut(s) 1036
BbsI GAAGAC 1 cut(s) 507
Bbv12I GWGCWC 2 cut(s) 349, 1036
BbvI GCAGC 1 cut(s) 127
BccI CCATC 3 cut(s) 212, 835, 868
BciT130I CCWGG 2 cut(s) 1005, 1014
BciVI GTATCC 1 cut(s) 902
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 1 cut(s) 1151
BcoDI GTCTC 3 cut(s) 122, 522, 605
BfaI CTAG 1 cut(s) 999
BfuI GTATCC 1 cut(s) 902
BisI GCNGC 2 cut(s) 141, 745
BlsI GCNGC 2 cut(s) 142, 746
Bme1390I CCNGG 3 cut(s) 1005, 1014, 1151
Bme18I GGWCC 3 cut(s) 568, 645, 844
BmeT110I CYCGRG 1 cut(s) 1134
BmgT120I GGNCC 4 cut(s) 191, 568, 645, 844
BmiI GGNNCC 6 cut(s) 569, 570, 646, 663, 846, 1120
BmrFI CCNGG 3 cut(s) 1005, 1014, 1151
BmsI GCATC 2 cut(s) 955, 1055
BpiI GAAGAC 1 cut(s) 507
BpmI CTGGAG 1 cut(s) 648
BpuEI CTTGAG 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 1151
BsaJI CCNNGG 3 cut(s) 147, 864, 1150
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 1 cut(s) 1062
Bse118I RCCGGY 1 cut(s) 193
Bse1I ACTGG 3 cut(s) 446, 1120, 1122
Bse3DI GCAATG 2 cut(s) 325, 891
BseBI CCWGG 2 cut(s) 1005, 1014
BseDI CCNNGG 3 cut(s) 147, 864, 1150
BseGI GGATG 2 cut(s) 860, 1049
BseLI CCNNNNNNNGG 1 cut(s) 1062
BseMI GCAATG 2 cut(s) 325, 891
BseNI ACTGG 3 cut(s) 446, 1120, 1122
BseXI GCAGC 1 cut(s) 127
BseYI CCCAGC 2 cut(s) 641, 1061
Bsh1236I CGCG 4 cut(s) 306, 634, 866, 951
Bsh1285I CGRYCG 1 cut(s) 431
BshFI GGCC 5 cut(s) 69, 193, 539, 701, 747
BsiEI CGRYCG 1 cut(s) 431
BsiHKAI GWGCWC 2 cut(s) 349, 1036
BsiHKCI CYCGRG 1 cut(s) 1134
BsiSI CCGG 3 cut(s) 194, 431, 1150
BslFI GGGAC 3 cut(s) 554, 658, 1078
BslI CCNNNNNNNGG 1 cut(s) 1062
BsmAI GTCTC 3 cut(s) 122, 522, 605
BsmBI CGTCTC 1 cut(s) 605
BsmFI GGGAC 3 cut(s) 554, 658, 1078
BsnI GGCC 5 cut(s) 69, 193, 539, 701, 747
BsoBI CYCGRG 1 cut(s) 1134
Bsp1286I GDGCHC 2 cut(s) 349, 1036
Bsp1407I TGTACA 2 cut(s) 813, 1141
Bsp143I GATC 6 cut(s) 613, 874, 930, 960, 1016, 1097
BspACI CCGC 7 cut(s) 183, 316, 448, 744, 864, 866, 1110
BspANI GGCC 5 cut(s) 69, 193, 539, 701, 747
BspFNI CGCG 4 cut(s) 306, 634, 866, 951
BspHI TCATGA 2 cut(s) 279, 496
BspLI GGNNCC 6 cut(s) 569, 570, 646, 663, 846, 1120
BspPI GGATC 3 cut(s) 955, 1024, 1105
BspQI GCTCTTC 2 cut(s) 984, 1024
BsrDI GCAATG 2 cut(s) 325, 891
BsrFI RCCGGY 1 cut(s) 193
BsrGI TGTACA 2 cut(s) 813, 1141
BsrI ACTGG 3 cut(s) 446, 1120, 1122
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 3 cut(s) 147, 864, 1150
BssMI GATC 6 cut(s) 613, 874, 930, 960, 1016, 1097
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 2 cut(s) 1005, 1014
Bst6I CTCTTC 4 cut(s) 72, 416, 984, 1024
BstAUI TGTACA 2 cut(s) 813, 1141
BstC8I GCNNGC 3 cut(s) 304, 308, 541
BstDSI CCRYGG 1 cut(s) 864
BstF5I GGATG 2 cut(s) 860, 1049
BstFNI CGCG 4 cut(s) 306, 634, 866, 951
BstHHI GCGC 1 cut(s) 784
BstKTI GATC 6 cut(s) 616, 877, 933, 963, 1019, 1100
BstMAI GTCTC 3 cut(s) 122, 522, 605
BstMBI GATC 6 cut(s) 613, 874, 930, 960, 1016, 1097
BstMCI CGRYCG 1 cut(s) 431
BstMWI GCNNNNNNNGC 3 cut(s) 66, 863, 918
BstNI CCWGG 2 cut(s) 1005, 1014
BstSCI CCNGG 3 cut(s) 1003, 1012, 1149
BstUI CGCG 4 cut(s) 306, 634, 866, 951
BstV1I GCAGC 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 507
BstXI CCANNNNNNTGG 1 cut(s) 298
BsuI GTATCC 1 cut(s) 902
BsuRI GGCC 5 cut(s) 69, 193, 539, 701, 747
BtgI CCRYGG 1 cut(s) 864
BtgZI GCGATG 1 cut(s) 932
BtsCI GGATG 2 cut(s) 860, 1049
BtsI GCAGTG 2 cut(s) 240, 1056
BtsIMutI CAGTG 3 cut(s) 240, 870, 1056
Cac8I GCNNGC 3 cut(s) 304, 308, 541
CciI TCATGA 2 cut(s) 279, 496
CfoI GCGC 1 cut(s) 784
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 4 cut(s) 191, 568, 645, 844
Cfr42I CCGCGG 1 cut(s) 867
Csp6I GTAC 3 cut(s) 386, 814, 1142
CviAII CATG 9 cut(s) 65, 280, 350, 389, 497, 592, 676, 680, 943
CviQI GTAC 3 cut(s) 386, 814, 1142
DpnI GATC 6 cut(s) 615, 876, 932, 962, 1018, 1099
DpnII GATC 6 cut(s) 613, 874, 930, 960, 1016, 1097
EaeI YGGCCR 2 cut(s) 67, 745
Eam1104I CTCTTC 4 cut(s) 72, 416, 984, 1024
EarI CTCTTC 4 cut(s) 72, 416, 984, 1024
EciI GGCGGA 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 1034
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 1036
Eco47I GGWCC 3 cut(s) 568, 645, 844
Eco53kI GAGCTC 1 cut(s) 1034
Eco57I CTGAAG 1 cut(s) 630
Eco88I CYCGRG 1 cut(s) 1134
EcoICRI GAGCTC 1 cut(s) 1034
EcoO109I RGGNCCY 1 cut(s) 568
EcoRI GAATTC 1 cut(s) 754
EcoRII CCWGG 2 cut(s) 1003, 1012
EcoT14I CCWWGG 1 cut(s) 147
EcoT22I ATGCAT 3 cut(s) 681, 914, 948
EcoT38I GRGCYC 1 cut(s) 1036
ErhI CCWWGG 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 605
FaeI CATG 9 cut(s) 68, 283, 353, 392, 500, 595, 679, 683, 946
FalI AAGNNNNNCTT 4 cut(s) 395, 427, 471, 503
FaqI GGGAC 3 cut(s) 554, 658, 1078
FatI CATG 9 cut(s) 64, 279, 349, 388, 496, 591, 675, 679, 942
FbaI TGATCA 1 cut(s) 874
Fnu4HI GCNGC 2 cut(s) 141, 745
FokI GGATG 2 cut(s) 847, 1036
FriOI GRGCYC 1 cut(s) 1036
Fsp4HI GCNGC 2 cut(s) 141, 745
FspBI CTAG 1 cut(s) 999
GlaI GCGC 1 cut(s) 783
GluI GCNGC 2 cut(s) 141, 745
GsaI CCCAGC 2 cut(s) 645, 1065
GsuI CTGGAG 1 cut(s) 648
HaeIII GGCC 5 cut(s) 69, 193, 539, 701, 747
HapII CCGG 3 cut(s) 194, 431, 1150
HhaI GCGC 1 cut(s) 784
Hin1II CATG 9 cut(s) 68, 283, 353, 392, 500, 595, 679, 683, 946
Hin6I GCGC 1 cut(s) 782
HinP1I GCGC 1 cut(s) 782
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HindIII AAGCTT 2 cut(s) 404, 829
HinfI GANTC 2 cut(s) 503, 1076
HpaII CCGG 3 cut(s) 194, 431, 1150
HphI GGTGA 2 cut(s) 149, 1085
Hpy166II GTNNAC 2 cut(s) 199, 400
Hpy188I TCNGA 4 cut(s) 176, 694, 935, 1097
Hpy188III TCNNGA 9 cut(s) 280, 497, 608, 665, 794, 895, 958, 986, 1020
Hpy8I GTNNAC 2 cut(s) 199, 400
HpyAV CCTTC 5 cut(s) 52, 106, 691, 800, 814
HpyCH4IV ACGT 2 cut(s) 624, 1159
HpyCH4V TGCA 6 cut(s) 233, 310, 476, 679, 912, 946
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 863, 918
HpySE526I ACGT 2 cut(s) 624, 1159
Hsp92II CATG 9 cut(s) 68, 283, 353, 392, 500, 595, 679, 683, 946
HspAI GCGC 1 cut(s) 782
KflI GGGWCCC 1 cut(s) 568
Ksp22I TGATCA 1 cut(s) 874
KspI CCGCGG 1 cut(s) 867
Kzo9I GATC 6 cut(s) 613, 874, 930, 960, 1016, 1097
LguI GCTCTTC 2 cut(s) 984, 1024
LmnI GCTCC 3 cut(s) 433, 667, 733
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 2 cut(s) 955, 1055
MaeI CTAG 1 cut(s) 999
MaeII ACGT 2 cut(s) 624, 1159
MaeIII GTNAC 2 cut(s) 246, 868
MalI GATC 6 cut(s) 615, 876, 932, 962, 1018, 1099
MboI GATC 6 cut(s) 613, 874, 930, 960, 1016, 1097
MboII GAAGA 8 cut(s) 89, 250, 403, 485, 512, 623, 1001, 1041
MhlI GDGCHC 2 cut(s) 349, 1036
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 4 cut(s) 93, 328, 754, 1081
MluI ACGCGT 1 cut(s) 632
MluNI TGGCCA 1 cut(s) 69
MlyI GAGTC 1 cut(s) 497
MnlI CCTC 4 cut(s) 32, 73, 444, 1063
Mox20I TGGCCA 1 cut(s) 69
Mph1103I ATGCAT 3 cut(s) 681, 914, 948
MroXI GAANNNNTTC 2 cut(s) 116, 1123
MscI TGGCCA 1 cut(s) 69
MseI TTAA 2 cut(s) 627, 770
MslI CAYNNNNRTG 1 cut(s) 318
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 2 cut(s) 744, 866
MspI CCGG 3 cut(s) 194, 431, 1150
MspR9I CCNGG 3 cut(s) 1005, 1014, 1151
MvaI CCWGG 2 cut(s) 1005, 1014
MvnI CGCG 4 cut(s) 306, 634, 866, 951
MwoI GCNNNNNNNGC 3 cut(s) 66, 863, 918
NciI CCSGG 1 cut(s) 1151
NdeII GATC 6 cut(s) 613, 874, 930, 960, 1016, 1097
NlaIII CATG 9 cut(s) 68, 283, 353, 392, 500, 595, 679, 683, 946
NlaIV GGNNCC 6 cut(s) 569, 570, 646, 663, 846, 1120
NmuCI GTSAC 2 cut(s) 246, 868
NsiI ATGCAT 3 cut(s) 681, 914, 948
PagI TCATGA 2 cut(s) 279, 496
PciSI GCTCTTC 2 cut(s) 984, 1024
PdmI GAANNNNTTC 2 cut(s) 116, 1123
PfeI GAWTC 1 cut(s) 1076
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 2 cut(s) 142, 746
PleI GAGTC 1 cut(s) 497
PpsI GAGTC 1 cut(s) 497
PpuMI RGGWCCY 1 cut(s) 568
Psp124BI GAGCTC 1 cut(s) 1036
Psp5II RGGWCCY 1 cut(s) 568
Psp6I CCWGG 2 cut(s) 1003, 1012
PspFI CCCAGC 2 cut(s) 641, 1061
PspGI CCWGG 2 cut(s) 1003, 1012
PspN4I GGNNCC 6 cut(s) 569, 570, 646, 663, 846, 1120
PspPI GGNCC 4 cut(s) 191, 568, 645, 844
PspPPI RGGWCCY 1 cut(s) 568
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 3 cut(s) 387, 815, 1143
RsaNI GTAC 3 cut(s) 386, 814, 1142
RseI CAYNNNNRTG 1 cut(s) 318
SacI GAGCTC 1 cut(s) 1036
SacII CCGCGG 1 cut(s) 867
SapI GCTCTTC 2 cut(s) 984, 1024
SaqAI TTAA 2 cut(s) 627, 770
SatI GCNGC 2 cut(s) 141, 745
Sau3AI GATC 6 cut(s) 613, 874, 930, 960, 1016, 1097
Sau96I GGNCC 4 cut(s) 191, 568, 645, 844
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 3 cut(s) 1005, 1014, 1151
SduI GDGCHC 2 cut(s) 349, 1036
SfaNI GCATC 2 cut(s) 955, 1055
Sfr303I CCGCGG 1 cut(s) 867
SgrBI CCGCGG 1 cut(s) 867
SinI GGWCC 3 cut(s) 568, 645, 844
SmiMI CAYNNNNRTG 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 4 cut(s) 93, 328, 754, 1081
SsiI CCGC 7 cut(s) 183, 316, 448, 744, 864, 866, 1110
SspMI CTAG 1 cut(s) 999
SstI GAGCTC 1 cut(s) 1036
StyD4I CCNGG 3 cut(s) 1003, 1012, 1149
StyI CCWWGG 1 cut(s) 147
TaiI ACGT 2 cut(s) 627, 1162
TaqI TCGA 2 cut(s) 795, 1100
TasI AATT 4 cut(s) 93, 328, 754, 1081
TatI WGTACW 2 cut(s) 813, 1141
TauI GCSGC 1 cut(s) 747
TfiI GAWTC 1 cut(s) 1076
Tru1I TTAA 2 cut(s) 627, 770
Tru9I TTAA 2 cut(s) 627, 770
TscAI CASTG 3 cut(s) 240, 877, 1063
TseFI GTSAC 2 cut(s) 246, 868
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 2 cut(s) 246, 868
TspDTI ATGAA 6 cut(s) 90, 268, 296, 390, 485, 513
TspRI CASTG 3 cut(s) 240, 877, 1063
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 3 cut(s) 568, 645, 844
XapI RAATTY 3 cut(s) 328, 754, 1081
XcmI CCANNNNNNNNNTGG 2 cut(s) 655, 949
XmnI GAANNNNTTC 2 cut(s) 116, 1123
XspI CTAG 1 cut(s) 999
Zsp2I ATGCAT 3 cut(s) 681, 914, 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.