Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006236

Physical Location & Seq

Genomic Coordinates Reverse (-)

62199055 .. 62199396

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG410000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGATGGACCCGACATTAGCACCATCCACGGTCACTGATCAAGTAGCAATGTGTATCCAGATAGGGTTATTATGCATACAAGGTGACCCCCAGATCAGACCCACCATGCATCGCGTGGTCGTGATCCTATCAAAGAAACCGAGCAATCTTGAAGAGCCAACTAGACCTGGAATACCAGGATCAAGATACAGAAGATCTCACAGACCAGCTGGTTCATCTTCCACTGCTGGGACTTCTGGTGAATCAAATTCTCATACATTCGGATCGAGCTTTACCGCAACTGGAACCAGTTCGGCAACCCAAGTTGTACAAGACCGGGGGAAACGTCCTATGGAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

113

Amino Acids

12.03

Weight (kDa)

9.68

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70740 AT1G70740
fragaria_vesca	FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050
malus_domestica	MD13G1021200.v1.1 MD16G1022500.v1.1
prunus_persica	Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1
pyrus_communis	pycom13g02010 pycom16g01980
rosa_chinensis	RchiOBHm_Chr4g0443541
rosa_laevigata	RLG00000005918
rosa_multiflora	Rmu_sc0000648.1_g000006 Rmu_sc0001118.1_g000023
rosa_roxburghii	Rroxscaffold_5G00384090
rosa_samantha	Rh4AG402800 Rh4BG414500 Rh4CG430100 Rh4DG410000
rosa_wichuraiana	Rw4G034730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	114
AciI	CCGC	1 cut(s)	276
AclWI	GGATC	3 cut(s)	118, 187, 271
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	152
AjnI	CCWGG	2 cut(s)	166, 175
AluBI	AGCT	2 cut(s)	209, 270
AluI	AGCT	2 cut(s)	209, 270
AlwI	GGATC	3 cut(s)	118, 187, 271
ApoI	RAATTY	1 cut(s)	247
Asp700I	GAANNNNTTC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	2 cut(s)	95, 251
AvaII	GGWCC	1 cut(s)	7
BccI	CCATC	1 cut(s)	31
BciT130I	CCWGG	2 cut(s)	168, 177
BciVI	GTATCC	1 cut(s)	65
BclI	TGATCA	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	317
BfaI	CTAG	1 cut(s)	162
BfuI	GTATCC	1 cut(s)	65
BglII	AGATCT	1 cut(s)	194
Bme1390I	CCNGG	3 cut(s)	168, 177, 317
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	9, 286
BmrFI	CCNGG	3 cut(s)	168, 177, 317
BmsI	GCATC	1 cut(s)	118
BpuMI	CCSGG	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	27, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	286, 288
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	2 cut(s)	168, 177
BseDI	CCNNGG	2 cut(s)	27, 316
BseGI	GGATG	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	286, 288
BseYI	CCCAGC	1 cut(s)	227
Bsh1236I	CGCG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	316
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	244
Bsp1407I	TGTACA	1 cut(s)	307
Bsp143I	GATC	6 cut(s)	37, 93, 123, 179, 194, 263
BspACI	CCGC	1 cut(s)	276
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	9, 286
BspPI	GGATC	3 cut(s)	118, 187, 271
BspQI	GCTCTTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	54
BsrGI	TGTACA	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	286, 288
BssECI	CCNNGG	2 cut(s)	27, 316
BssMI	GATC	6 cut(s)	37, 93, 123, 179, 194, 263
Bst2UI	CCWGG	2 cut(s)	168, 177
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	147
BstAUI	TGTACA	1 cut(s)	307
BstDSI	CCRYGG	1 cut(s)	27
BstEII	GGTNACC	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	23
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	6 cut(s)	40, 96, 126, 182, 197, 266
BstMBI	GATC	6 cut(s)	37, 93, 123, 179, 194, 263
BstNI	CCWGG	2 cut(s)	168, 177
BstPI	GGTNACC	1 cut(s)	83
BstSCI	CCNGG	3 cut(s)	166, 175, 315
BstUI	CGCG	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuI	GTATCC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	23
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	33, 222
Cfr13I	GGNCC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	3 cut(s)	157, 209, 270
CviKI_1	RGCY	3 cut(s)	157, 209, 270
CviQI	GTAC	1 cut(s)	308
DpnI	GATC	6 cut(s)	39, 95, 125, 181, 196, 265
DpnII	GATC	6 cut(s)	37, 93, 123, 179, 194, 263
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	7
Eco91I	GGTNACC	1 cut(s)	83
EcoO65I	GGTNACC	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	166, 175
EcoT22I	ATGCAT	2 cut(s)	77, 111
FaeI	CATG	1 cut(s)	109
FaiI	YATR	5 cut(s)	73, 77, 107, 255, 332
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	37
FokI	GGATG	1 cut(s)	10
FspBI	CTAG	1 cut(s)	162
GsaI	CCCAGC	1 cut(s)	231
HapII	CCGG	1 cut(s)	316
Hin1II	CATG	1 cut(s)	109
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	1 cut(s)	316
HphI	GGTGA	2 cut(s)	95, 251
Hpy188I	TCNGA	2 cut(s)	98, 263
Hpy188III	TCNNGA	4 cut(s)	58, 121, 149, 183
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	75, 109
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	6 cut(s)	37, 93, 123, 179, 194, 263
LguI	GCTCTTC	1 cut(s)	147
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	2 cut(s)	31, 83
MalI	GATC	6 cut(s)	39, 95, 125, 181, 196, 265
MboI	GATC	6 cut(s)	37, 93, 123, 179, 194, 263
MboII	GAAGA	3 cut(s)	164, 204, 210
MflI	RGATCY	1 cut(s)	194
MluCI	AATT	1 cut(s)	247
Mph1103I	ATGCAT	2 cut(s)	77, 111
MroXI	GAANNNNTTC	1 cut(s)	289
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	316
MspR9I	CCNGG	3 cut(s)	168, 177, 317
MvaI	CCWGG	2 cut(s)	168, 177
MvnI	CGCG	1 cut(s)	114
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	6 cut(s)	37, 93, 123, 179, 194, 263
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	2 cut(s)	9, 286
NmuCI	GTSAC	2 cut(s)	31, 83
NsiI	ATGCAT	2 cut(s)	77, 111
PciSI	GCTCTTC	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	242
Psp6I	CCWGG	2 cut(s)	166, 175
PspEI	GGTNACC	1 cut(s)	83
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	2 cut(s)	166, 175
PspN4I	GGNNCC	2 cut(s)	9, 286
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	147
Sau3AI	GATC	6 cut(s)	37, 93, 123, 179, 194, 263
Sau96I	GGNCC	1 cut(s)	7
ScrFI	CCNGG	3 cut(s)	168, 177, 317
SetI	ASST	5 cut(s)	85, 169, 211, 272, 328
SfaNI	GCATC	1 cut(s)	118
SinI	GGWCC	1 cut(s)	7
Sse9I	AATT	1 cut(s)	247
SsiI	CCGC	1 cut(s)	276
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	166, 175, 315
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	266
TasI	AATT	1 cut(s)	247
TatI	WGTACW	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	242
TscAI	CASTG	2 cut(s)	40, 229
TseFI	GTSAC	2 cut(s)	31, 83
Tsp45I	GTSAC	2 cut(s)	31, 83
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	2 cut(s)	40, 229
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	289
XspI	CTAG	1 cut(s)	162
Zsp2I	ATGCAT	2 cut(s)	77, 111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.