Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006236

Physical Location & Seq

Genomic Coordinates Forward (+)

2803785 .. 2807040

Gene Structure 3256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005918

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGACCAAGTCCAAGAACTTCCTCAACAATCTCATCAAAACCTTCGGGTTCGGCTCAAGCAAAGGTGGCCGTAATGAAGAGGACTTGGAGAAAATTGCTCAACAGGAACAGAAGGTTTTCACTTTTGAGACTTTGGGGAGATTGCCTGATGGTAGAGCTATTGCAGTGAAGAAGCTGTCACAAAGTTCAAATCAAGGAAAAAAAGAGTTCATGAACGAAGCCAAGTTGTTGGCTCGCGTGCAACACCGCAATGTTGTGAATTTATTGGGCTATTGTGCTCATGGGGGAGAGAAACTACTTGTATATGAATATGTCGTACATGAGAGCGTTGACAAGCTTCTCTTCAAACCGGATAGACGACAGGAGCTTGACTGGAAGCGGAGGTATGATATAATATGTGGCGTTGCAAAAGGTTTGCTTTATCTTCATGAAGACTCGCACAATCGTATTATACACAGAGACATCAAGGCCAGCAACATTCTGCTTGATGATAAATGGGTCCCTAAGATTGCTGATTTTGGCATGGCTCGTCTCTTTCCTGAAGATCAAACGCACGTTAATACGCGTGTTGCTGGGACCAACGGGTATATGGCTCCAGAGTATGTCATGCATGGACATTTATCAGAGAAGGCCGATGTATTTAGCTTTGGTGTGTTGATTTTGGAGCTTATCAGCGGCCAAAGGAATTCGTCATTCAACTTGACTGGTGAAGCGCAGAGCCTTCTTGATTGGGCATACAAGCTGTACAAGAAGGGGAGAAGCTTGGAGATGATGGACCCAACATTAGCACCATCCGCGGTCACTGATCAAGTAGCAATGTGTATCCAGATTGGGTTATTATGCATACAAGGCGACCCCCAGATCAGACCCACCATGCATCGCGTGGTCGTGATCCTATCAAAGAAACCGAGCAATCTTGAAGAGCCAAGTAGACCCGGAATACCAGGATCAAGATACAGAAGATCTCACAGACCAGCTGGTTCATCTTCCACTGCTGGGACTTCTGGTGAATCAAATTCTCATACATTCGGATCGAGCTTTACCGCAACTGGAACCAGTTCGGCAACCCAAGTTGTACAAGACCGGGGGAAACGCCCTATGGAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

370

Amino Acids

41.21

Weight (kDa)

9.32

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	50 - 295	1.1e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	52 - 297	3.3e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70740 AT1G70740
fragaria_vesca	FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050
malus_domestica	MD13G1021200.v1.1 MD16G1022500.v1.1
prunus_persica	Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1
pyrus_communis	pycom13g02010 pycom16g01980
rosa_chinensis	RchiOBHm_Chr4g0443541
rosa_laevigata	RLG00000005918
rosa_multiflora	Rmu_sc0000648.1_g000006 Rmu_sc0001118.1_g000023
rosa_roxburghii	Rroxscaffold_5G00384090
rosa_samantha	Rh4AG402800 Rh4BG414500 Rh4CG430100 Rh4DG410000
rosa_wichuraiana	Rw4G034730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	931
AccII	CGCG	4 cut(s)	237, 565, 797, 882
AciI	CCGC	6 cut(s)	247, 379, 675, 795, 797, 1044
AclWI	GGATC	3 cut(s)	886, 955, 1039
AcoI	YGGCCR	2 cut(s)	67, 676
AcsI	RAATTY	3 cut(s)	259, 685, 1015
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	3 cut(s)	318, 746, 1077
AfiI	CCNNNNNNNGG	1 cut(s)	996
AflIII	ACRYGT	1 cut(s)	563
AgsI	TTSAA	4 cut(s)	189, 346, 697, 920
AjnI	CCWGG	1 cut(s)	943
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	3 cut(s)	122, 453, 536
AlwI	GGATC	3 cut(s)	886, 955, 1039
AoxI	GGCC	4 cut(s)	67, 468, 630, 676
ApoI	RAATTY	3 cut(s)	259, 685, 1015
Asp700I	GAANNNNTTC	2 cut(s)	116, 1057
AspLEI	GCGC	1 cut(s)	715
AspS9I	GGNCC	3 cut(s)	499, 576, 775
AsuC2I	CCSGG	2 cut(s)	936, 1085
AsuHPI	GGTGA	2 cut(s)	719, 1019
AvaII	GGWCC	3 cut(s)	499, 576, 775
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	280
BccI	CCATC	3 cut(s)	143, 766, 799
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	945
BciVI	GTATCC	1 cut(s)	833
BclI	TGATCA	1 cut(s)	805
BcnI	CCSGG	2 cut(s)	936, 1085
BcoDI	GTCTC	3 cut(s)	122, 453, 536
BfuI	GTATCC	1 cut(s)	833
BglII	AGATCT	1 cut(s)	962
BisI	GCNGC	1 cut(s)	676
BlsI	GCNGC	1 cut(s)	677
Bme1390I	CCNGG	3 cut(s)	936, 945, 1085
Bme18I	GGWCC	3 cut(s)	499, 576, 775
BmgT120I	GGNCC	3 cut(s)	499, 576, 775
BmiI	GGNNCC	6 cut(s)	500, 501, 577, 594, 777, 1054
BmrFI	CCNGG	3 cut(s)	936, 945, 1085
BmsI	GCATC	1 cut(s)	886
BpiI	GAAGAC	1 cut(s)	438
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	40
BpuMI	CCSGG	2 cut(s)	936, 1085
BsaJI	CCNNGG	2 cut(s)	795, 1084
BsaWI	WCCGGW	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	1 cut(s)	996
Bse1I	ACTGG	4 cut(s)	377, 709, 1054, 1056
Bse3DI	GCAATG	2 cut(s)	256, 822
BseBI	CCWGG	1 cut(s)	945
BseDI	CCNNGG	2 cut(s)	795, 1084
BseGI	GGATG	1 cut(s)	791
BseLI	CCNNNNNNNGG	1 cut(s)	996
BseMI	GCAATG	2 cut(s)	256, 822
BseNI	ACTGG	4 cut(s)	377, 709, 1054, 1056
BseYI	CCCAGC	2 cut(s)	572, 995
Bsh1236I	CGCG	4 cut(s)	237, 565, 797, 882
BshFI	GGCC	4 cut(s)	69, 470, 632, 678
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	3 cut(s)	350, 936, 1084
BslFI	GGGAC	3 cut(s)	485, 589, 1012
BslI	CCNNNNNNNGG	1 cut(s)	996
BsmAI	GTCTC	3 cut(s)	122, 453, 536
BsmBI	CGTCTC	1 cut(s)	536
BsmFI	GGGAC	3 cut(s)	485, 589, 1012
BsnI	GGCC	4 cut(s)	69, 470, 632, 678
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp1407I	TGTACA	2 cut(s)	744, 1075
Bsp143I	GATC	7 cut(s)	544, 805, 861, 891, 947, 962, 1031
BspACI	CCGC	6 cut(s)	247, 379, 675, 795, 797, 1044
BspANI	GGCC	4 cut(s)	69, 470, 632, 678
BspFNI	CGCG	4 cut(s)	237, 565, 797, 882
BspHI	TCATGA	2 cut(s)	210, 427
BspLI	GGNNCC	6 cut(s)	500, 501, 577, 594, 777, 1054
BspPI	GGATC	3 cut(s)	886, 955, 1039
BspQI	GCTCTTC	1 cut(s)	915
BsrDI	GCAATG	2 cut(s)	256, 822
BsrGI	TGTACA	2 cut(s)	744, 1075
BsrI	ACTGG	4 cut(s)	377, 709, 1054, 1056
BssECI	CCNNGG	2 cut(s)	795, 1084
BssMI	GATC	7 cut(s)	544, 805, 861, 891, 947, 962, 1031
Bst2UI	CCWGG	1 cut(s)	945
Bst6I	CTCTTC	3 cut(s)	72, 347, 915
BstAUI	TGTACA	2 cut(s)	744, 1075
BstC8I	GCNNGC	3 cut(s)	235, 239, 472
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	1 cut(s)	795
BstF5I	GGATG	1 cut(s)	791
BstFNI	CGCG	4 cut(s)	237, 565, 797, 882
BstHHI	GCGC	1 cut(s)	715
BstKTI	GATC	7 cut(s)	547, 808, 864, 894, 950, 965, 1034
BstMAI	GTCTC	3 cut(s)	122, 453, 536
BstMBI	GATC	7 cut(s)	544, 805, 861, 891, 947, 962, 1031
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 794, 849
BstNI	CCWGG	1 cut(s)	945
BstSCI	CCNGG	3 cut(s)	934, 943, 1083
BstUI	CGCG	4 cut(s)	237, 565, 797, 882
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	962
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	962
BsuI	GTATCC	1 cut(s)	833
BsuRI	GGCC	4 cut(s)	69, 470, 632, 678
BtgI	CCRYGG	1 cut(s)	795
BtgZI	GCGATG	1 cut(s)	863
BtsCI	GGATG	1 cut(s)	791
BtsI	GCAGTG	2 cut(s)	171, 990
BtsIMutI	CAGTG	3 cut(s)	171, 801, 990
Cac8I	GCNNGC	3 cut(s)	235, 239, 472
CciI	TCATGA	2 cut(s)	210, 427
CfoI	GCGC	1 cut(s)	715
Cfr13I	GGNCC	3 cut(s)	499, 576, 775
Cfr42I	CCGCGG	1 cut(s)	798
Csp6I	GTAC	3 cut(s)	317, 745, 1076
CviAII	CATG	8 cut(s)	211, 281, 320, 428, 523, 607, 611, 874
CviQI	GTAC	3 cut(s)	317, 745, 1076
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	7 cut(s)	546, 807, 863, 893, 949, 964, 1033
DpnII	GATC	7 cut(s)	544, 805, 861, 891, 947, 962, 1031
EaeI	YGGCCR	2 cut(s)	67, 676
Eam1104I	CTCTTC	3 cut(s)	72, 347, 915
EarI	CTCTTC	3 cut(s)	72, 347, 915
Eco47I	GGWCC	3 cut(s)	499, 576, 775
Eco57I	CTGAAG	1 cut(s)	561
EcoO109I	RGGNCCY	1 cut(s)	499
EcoRI	GAATTC	1 cut(s)	685
EcoRII	CCWGG	1 cut(s)	943
EcoT22I	ATGCAT	3 cut(s)	612, 845, 879
Esp3I	CGTCTC	1 cut(s)	536
FaeI	CATG	8 cut(s)	214, 284, 323, 431, 526, 610, 614, 877
FalI	AAGNNNNNCTT	4 cut(s)	326, 358, 402, 434
FaqI	GGGAC	3 cut(s)	485, 589, 1012
FatI	CATG	8 cut(s)	210, 280, 319, 427, 522, 606, 610, 873
FbaI	TGATCA	1 cut(s)	805
FblI	GTMKAC	1 cut(s)	931
Fnu4HI	GCNGC	1 cut(s)	676
FokI	GGATG	1 cut(s)	778
Fsp4HI	GCNGC	1 cut(s)	676
GlaI	GCGC	1 cut(s)	714
GluI	GCNGC	1 cut(s)	676
GsaI	CCCAGC	2 cut(s)	576, 999
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	4 cut(s)	69, 470, 632, 678
HapII	CCGG	3 cut(s)	350, 936, 1084
HhaI	GCGC	1 cut(s)	715
Hin1II	CATG	8 cut(s)	214, 284, 323, 431, 526, 610, 614, 877
Hin6I	GCGC	1 cut(s)	713
HinP1I	GCGC	1 cut(s)	713
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	2 cut(s)	335, 760
HinfI	GANTC	2 cut(s)	434, 1010
HpaII	CCGG	3 cut(s)	350, 936, 1084
HphI	GGTGA	2 cut(s)	719, 1019
Hpy166II	GTNNAC	2 cut(s)	331, 932
Hpy188I	TCNGA	3 cut(s)	625, 866, 1031
Hpy188III	TCNNGA	9 cut(s)	211, 428, 539, 596, 725, 826, 889, 917, 951
Hpy8I	GTNNAC	2 cut(s)	331, 932
HpyAV	CCTTC	5 cut(s)	52, 106, 622, 731, 745
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	6 cut(s)	164, 241, 407, 610, 843, 877
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 794, 849
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	8 cut(s)	214, 284, 323, 431, 526, 610, 614, 877
HspAI	GCGC	1 cut(s)	713
KflI	GGGWCCC	1 cut(s)	499
Ksp22I	TGATCA	1 cut(s)	805
KspI	CCGCGG	1 cut(s)	798
Kzo9I	GATC	7 cut(s)	544, 805, 861, 891, 947, 962, 1031
LguI	GCTCTTC	1 cut(s)	915
LmnI	GCTCC	3 cut(s)	364, 598, 664
LweI	GCATC	1 cut(s)	886
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	2 cut(s)	177, 799
MalI	GATC	7 cut(s)	546, 807, 863, 893, 949, 964, 1033
MboI	GATC	7 cut(s)	544, 805, 861, 891, 947, 962, 1031
MboII	GAAGA	9 cut(s)	89, 181, 334, 416, 443, 554, 932, 972, 978
MflI	RGATCY	1 cut(s)	962
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	4 cut(s)	93, 259, 685, 1015
MluI	ACGCGT	1 cut(s)	563
MlyI	GAGTC	1 cut(s)	428
MnlI	CCTC	3 cut(s)	32, 73, 375
Mph1103I	ATGCAT	3 cut(s)	612, 845, 879
MroXI	GAANNNNTTC	2 cut(s)	116, 1057
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	1 cut(s)	249
MspA1I	CMGCKG	3 cut(s)	675, 797, 977
MspI	CCGG	3 cut(s)	350, 936, 1084
MspR9I	CCNGG	3 cut(s)	936, 945, 1085
MvaI	CCWGG	1 cut(s)	945
MvnI	CGCG	4 cut(s)	237, 565, 797, 882
MwoI	GCNNNNNNNGC	3 cut(s)	66, 794, 849
NciI	CCSGG	2 cut(s)	936, 1085
NdeII	GATC	7 cut(s)	544, 805, 861, 891, 947, 962, 1031
NlaIII	CATG	8 cut(s)	214, 284, 323, 431, 526, 610, 614, 877
NlaIV	GGNNCC	6 cut(s)	500, 501, 577, 594, 777, 1054
NmuCI	GTSAC	2 cut(s)	177, 799
NsiI	ATGCAT	3 cut(s)	612, 845, 879
PagI	TCATGA	2 cut(s)	210, 427
PciSI	GCTCTTC	1 cut(s)	915
PdmI	GAANNNNTTC	2 cut(s)	116, 1057
PfeI	GAWTC	1 cut(s)	1010
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	677
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
PpuMI	RGGWCCY	1 cut(s)	499
Psp5II	RGGWCCY	1 cut(s)	499
Psp6I	CCWGG	1 cut(s)	943
PspFI	CCCAGC	2 cut(s)	572, 995
PspGI	CCWGG	1 cut(s)	943
PspN4I	GGNNCC	6 cut(s)	500, 501, 577, 594, 777, 1054
PspPI	GGNCC	3 cut(s)	499, 576, 775
PspPPI	RGGWCCY	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	962
PsyI	GACNNNGTC	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	977
RsaI	GTAC	3 cut(s)	318, 746, 1077
RsaNI	GTAC	3 cut(s)	317, 745, 1076
RseI	CAYNNNNRTG	1 cut(s)	249
SacII	CCGCGG	1 cut(s)	798
SapI	GCTCTTC	1 cut(s)	915
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	1 cut(s)	676
Sau3AI	GATC	7 cut(s)	544, 805, 861, 891, 947, 962, 1031
Sau96I	GGNCC	3 cut(s)	499, 576, 775
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	3 cut(s)	936, 945, 1085
SduI	GDGCHC	1 cut(s)	280
SfaNI	GCATC	1 cut(s)	886
Sfr303I	CCGCGG	1 cut(s)	798
SgrBI	CCGCGG	1 cut(s)	798
SinI	GGWCC	3 cut(s)	499, 576, 775
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	4 cut(s)	93, 259, 685, 1015
SsiI	CCGC	6 cut(s)	247, 379, 675, 795, 797, 1044
StyD4I	CCNGG	3 cut(s)	934, 943, 1083
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	1 cut(s)	1034
TasI	AATT	4 cut(s)	93, 259, 685, 1015
TatI	WGTACW	2 cut(s)	744, 1075
TauI	GCSGC	1 cut(s)	678
TfiI	GAWTC	1 cut(s)	1010
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	3 cut(s)	171, 808, 997
TseFI	GTSAC	2 cut(s)	177, 799
Tsp45I	GTSAC	2 cut(s)	177, 799
TspDTI	ATGAA	7 cut(s)	90, 199, 227, 321, 416, 444, 972
TspRI	CASTG	3 cut(s)	171, 808, 997
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	3 cut(s)	499, 576, 775
XapI	RAATTY	3 cut(s)	259, 685, 1015
XcmI	CCANNNNNNNNNTGG	2 cut(s)	586, 880
XmiI	GTMKAC	1 cut(s)	931
XmnI	GAANNNNTTC	2 cut(s)	116, 1057
Zsp2I	ATGCAT	3 cut(s)	612, 845, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.