Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000648.1

Orthogroup ID

OG0006236

Physical Location & Seq

Genomic Coordinates Reverse (-)

26500 .. 26841

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000648.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgatggacccaacattagcaccacccgcggtcactgatcaagtagcaatgtgtgtccagatagggttattatgcatacaaggcgacccccagatcagacccaccatgcatcgcgtggtcgtgatcctatcaaagaaaccgagcaatcttgaagagccaactagacctggaataccaggatcaagatacagaagagctcacagaccagctggttcatcctccactgctgggacttctggtgaatcaaattctcatacattcggatcgagctttaccgcaactggaaccagttcggcagccccagttgtacaagaccgggggaaacgtccaatggagagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

113

Amino Acids

11.92

Weight (kDa)

9.68

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70740 AT1G70740
fragaria_vesca	FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050
malus_domestica	MD13G1021200.v1.1 MD16G1022500.v1.1
prunus_persica	Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1
pyrus_communis	pycom13g02010 pycom16g01980
rosa_chinensis	RchiOBHm_Chr4g0443541
rosa_laevigata	RLG00000005918
rosa_multiflora	Rmu_sc0000648.1_g000006 Rmu_sc0001118.1_g000023
rosa_roxburghii	Rroxscaffold_5G00384090
rosa_samantha	Rh4AG402800 Rh4BG414500 Rh4CG430100 Rh4DG410000
rosa_wichuraiana	Rw4G034730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	29, 114
AciI	CCGC	3 cut(s)	27, 29, 276
AclWI	GGATC	3 cut(s)	118, 187, 271
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	152
AjnI	CCWGG	2 cut(s)	166, 175
AluBI	AGCT	3 cut(s)	197, 209, 270
AluI	AGCT	3 cut(s)	197, 209, 270
Alw21I	GWGCWC	1 cut(s)	199
AlwI	GGATC	3 cut(s)	118, 187, 271
ApeKI	GCWGC	1 cut(s)	296
ApoI	RAATTY	1 cut(s)	247
Asp700I	GAANNNNTTC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	308
BciT130I	CCWGG	2 cut(s)	168, 177
BclI	TGATCA	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	317
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
Bme1390I	CCNGG	3 cut(s)	168, 177, 317
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	9, 286
BmrFI	CCNGG	3 cut(s)	168, 177, 317
BmrI	ACTGGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	118
BmuI	ACTGGG	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	27, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	3 cut(s)	286, 288, 302
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	2 cut(s)	168, 177
BseDI	CCNNGG	2 cut(s)	27, 316
BseGI	GGATG	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	54
BseNI	ACTGG	3 cut(s)	286, 288, 302
BseXI	GCAGC	1 cut(s)	308
BseYI	CCCAGC	1 cut(s)	227
Bsh1236I	CGCG	2 cut(s)	29, 114
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	316
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp1407I	TGTACA	1 cut(s)	307
Bsp143I	GATC	5 cut(s)	37, 93, 123, 179, 263
BspACI	CCGC	3 cut(s)	27, 29, 276
BspFNI	CGCG	2 cut(s)	29, 114
BspLI	GGNNCC	2 cut(s)	9, 286
BspPI	GGATC	3 cut(s)	118, 187, 271
BspQI	GCTCTTC	2 cut(s)	147, 187
BsrDI	GCAATG	1 cut(s)	54
BsrGI	TGTACA	1 cut(s)	307
BsrI	ACTGG	3 cut(s)	286, 288, 302
BssECI	CCNNGG	2 cut(s)	27, 316
BssMI	GATC	5 cut(s)	37, 93, 123, 179, 263
Bst2UI	CCWGG	2 cut(s)	168, 177
Bst6I	CTCTTC	2 cut(s)	147, 187
BstAUI	TGTACA	1 cut(s)	307
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	215
BstFNI	CGCG	2 cut(s)	29, 114
BstKTI	GATC	5 cut(s)	40, 96, 126, 182, 266
BstMBI	GATC	5 cut(s)	37, 93, 123, 179, 263
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 81
BstNI	CCWGG	2 cut(s)	168, 177
BstSCI	CCNGG	3 cut(s)	166, 175, 315
BstUI	CGCG	2 cut(s)	29, 114
BstV1I	GCAGC	1 cut(s)	308
BtgI	CCRYGG	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	215
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	33, 222
Cfr13I	GGNCC	1 cut(s)	7
Cfr42I	CCGCGG	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	5 cut(s)	157, 197, 209, 270, 299
CviKI_1	RGCY	5 cut(s)	157, 197, 209, 270, 299
CviQI	GTAC	1 cut(s)	308
DpnI	GATC	5 cut(s)	39, 95, 125, 181, 265
DpnII	GATC	5 cut(s)	37, 93, 123, 179, 263
Eam1104I	CTCTTC	2 cut(s)	147, 187
EarI	CTCTTC	2 cut(s)	147, 187
Ecl136II	GAGCTC	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	166, 175
EcoT22I	ATGCAT	2 cut(s)	77, 111
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	1 cut(s)	109
FaiI	YATR	4 cut(s)	73, 77, 107, 255
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	1 cut(s)	105
FauI	CCCGC	1 cut(s)	34
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	297
FokI	GGATG	1 cut(s)	202
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	297
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	1 cut(s)	297
GsaI	CCCAGC	1 cut(s)	231
HapII	CCGG	1 cut(s)	316
Hin1II	CATG	1 cut(s)	109
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	1 cut(s)	316
HphI	GGTGA	1 cut(s)	251
Hpy188I	TCNGA	2 cut(s)	98, 263
Hpy188III	TCNNGA	4 cut(s)	58, 121, 149, 183
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	75, 109
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 81
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	37
KspI	CCGCGG	1 cut(s)	30
Kzo9I	GATC	5 cut(s)	37, 93, 123, 179, 263
LguI	GCTCTTC	2 cut(s)	147, 187
Lsp1109I	GCAGC	1 cut(s)	308
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	5 cut(s)	39, 95, 125, 181, 265
MboI	GATC	5 cut(s)	37, 93, 123, 179, 263
MboII	GAAGA	2 cut(s)	164, 204
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	1 cut(s)	247
MnlI	CCTC	1 cut(s)	229
Mph1103I	ATGCAT	2 cut(s)	77, 111
MroXI	GAANNNNTTC	1 cut(s)	289
MspA1I	CMGCKG	2 cut(s)	29, 209
MspI	CCGG	1 cut(s)	316
MspR9I	CCNGG	3 cut(s)	168, 177, 317
MvaI	CCWGG	2 cut(s)	168, 177
MvnI	CGCG	2 cut(s)	29, 114
MwoI	GCNNNNNNNGC	2 cut(s)	26, 81
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	5 cut(s)	37, 93, 123, 179, 263
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	2 cut(s)	9, 286
NmuCI	GTSAC	1 cut(s)	31
NsiI	ATGCAT	2 cut(s)	77, 111
PciSI	GCTCTTC	2 cut(s)	147, 187
PdmI	GAANNNNTTC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	298
Psp124BI	GAGCTC	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	166, 175
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	2 cut(s)	166, 175
PspN4I	GGNNCC	2 cut(s)	9, 286
PspPI	GGNCC	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	199
SacII	CCGCGG	1 cut(s)	30
SapI	GCTCTTC	2 cut(s)	147, 187
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	5 cut(s)	37, 93, 123, 179, 263
Sau96I	GGNCC	1 cut(s)	7
ScrFI	CCNGG	3 cut(s)	168, 177, 317
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	5 cut(s)	169, 199, 211, 272, 328
SfaNI	GCATC	1 cut(s)	118
Sfr303I	CCGCGG	1 cut(s)	30
SgrBI	CCGCGG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	7
Sse9I	AATT	1 cut(s)	247
SsiI	CCGC	3 cut(s)	27, 29, 276
SspMI	CTAG	1 cut(s)	162
SstI	GAGCTC	1 cut(s)	199
StyD4I	CCNGG	3 cut(s)	166, 175, 315
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	266
TasI	AATT	1 cut(s)	247
TatI	WGTACW	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	242
TscAI	CASTG	2 cut(s)	40, 229
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	2 cut(s)	40, 229
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	289
XspI	CTAG	1 cut(s)	162
Zsp2I	ATGCAT	2 cut(s)	77, 111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.