Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006236

Physical Location & Seq

Genomic Coordinates Reverse (-)

63617783 .. 63621907

Gene Structure 4125 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCTCCAGAGTATGTCATGCATGGACATTTATCGGAGAAGGCCGATGTATTTAGCTTTGGTGTGTTGGTTTTGGAGCTTATCAGCGGCCAAAGGAATTCGTCATTCAACTTAAATGTTGAAGCGCAGAGCCTTCTTGATTGGGCATACAAGCTGTACAAGAAGGGGAGAAGCTTGGAGATGATGGACCCAACATTAGCACCATCCGCGGTCACTGATCAAGTAGCAATGTGTATCCAGATAGGGTTATTATGCATACAAGGCGACCCCCAGATCAGACCCACCATGCATCGCGTGGTCGTGATCCTATCAAAGAAACCGAGCAATCTTGAAGAGCCAAGTAGACCCGGAATACCAGGATCAAGATACAGAAGATCTCACAGACCAGCTGGTTCATCTTCCACTGCTGGGACTTCTAGTGAATCAAATTCTCATACATTCGGATCGAGCTTTACCGCAACTGGAACCAGTTCGGCAACCCAAGTTGTACGAGACCGGGGGAAACGTCCTATGGAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

173

Amino Acids

18.84

Weight (kDa)

9.26

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 101	1.6e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70740 AT1G70740
fragaria_vesca	FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050 FvH4_4g34050
malus_domestica	MD13G1021200.v1.1 MD16G1022500.v1.1
prunus_persica	Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1 Prupe.1G330500_v2.0.a1
pyrus_communis	pycom13g02010 pycom16g01980
rosa_chinensis	RchiOBHm_Chr4g0443541
rosa_laevigata	RLG00000005918
rosa_multiflora	Rmu_sc0000648.1_g000006 Rmu_sc0001118.1_g000023
rosa_roxburghii	Rroxscaffold_5G00384090
rosa_samantha	Rh4AG402800 Rh4BG414500 Rh4CG430100 Rh4DG410000
rosa_wichuraiana	Rw4G034730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	343
AccII	CGCG	2 cut(s)	209, 294
AciI	CCGC	4 cut(s)	87, 207, 209, 456
AclWI	GGATC	3 cut(s)	298, 367, 451
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	2 cut(s)	97, 427
AfaI	GTAC	2 cut(s)	158, 489
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	3 cut(s)	109, 122, 332
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	6 cut(s)	57, 79, 154, 174, 389, 450
AluI	AGCT	6 cut(s)	57, 79, 154, 174, 389, 450
Alw26I	GTCTC	1 cut(s)	486
AlwI	GGATC	3 cut(s)	298, 367, 451
AoxI	GGCC	2 cut(s)	42, 88
ApoI	RAATTY	2 cut(s)	97, 427
Asp700I	GAANNNNTTC	1 cut(s)	469
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	2 cut(s)	348, 497
AvaII	GGWCC	1 cut(s)	187
BccI	CCATC	2 cut(s)	178, 211
BciT130I	CCWGG	1 cut(s)	357
BciVI	GTATCC	1 cut(s)	245
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	2 cut(s)	348, 497
BcoDI	GTCTC	1 cut(s)	486
BfaI	CTAG	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	245
BglII	AGATCT	1 cut(s)	374
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	3 cut(s)	348, 357, 497
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	3 cut(s)	6, 189, 466
BmrFI	CCNGG	3 cut(s)	348, 357, 497
BmsI	GCATC	1 cut(s)	298
BpuMI	CCSGG	2 cut(s)	348, 497
BsaI	GGTCTC	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	207, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse1I	ACTGG	2 cut(s)	466, 468
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	207, 496
BseGI	GGATG	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMI	GCAATG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	466, 468
BseYI	CCCAGC	1 cut(s)	407
Bsh1236I	CGCG	2 cut(s)	209, 294
BshFI	GGCC	2 cut(s)	44, 90
BsiSI	CCGG	2 cut(s)	348, 496
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	1 cut(s)	486
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	2 cut(s)	44, 90
Bso31I	GGTCTC	1 cut(s)	486
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	6 cut(s)	217, 273, 303, 359, 374, 443
BspACI	CCGC	4 cut(s)	87, 207, 209, 456
BspANI	GGCC	2 cut(s)	44, 90
BspFNI	CGCG	2 cut(s)	209, 294
BspLI	GGNNCC	3 cut(s)	6, 189, 466
BspPI	GGATC	3 cut(s)	298, 367, 451
BspQI	GCTCTTC	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	486
BsrDI	GCAATG	1 cut(s)	234
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	466, 468
BssECI	CCNNGG	2 cut(s)	207, 496
BssMI	GATC	6 cut(s)	217, 273, 303, 359, 374, 443
Bst2UI	CCWGG	1 cut(s)	357
Bst6I	CTCTTC	1 cut(s)	327
BstAUI	TGTACA	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	203
BstFNI	CGCG	2 cut(s)	209, 294
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	6 cut(s)	220, 276, 306, 362, 377, 446
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	6 cut(s)	217, 273, 303, 359, 374, 443
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 261
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	3 cut(s)	346, 355, 495
BstUI	CGCG	2 cut(s)	209, 294
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	44, 90
BtgI	CCRYGG	1 cut(s)	207
BtgZI	GCGATG	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	203
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	2 cut(s)	213, 402
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	187
Cfr42I	CCGCGG	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	157, 488
CviAII	CATG	3 cut(s)	19, 23, 286
CviQI	GTAC	2 cut(s)	157, 488
DpnI	GATC	6 cut(s)	219, 275, 305, 361, 376, 445
DpnII	GATC	6 cut(s)	217, 273, 303, 359, 374, 443
EaeI	YGGCCR	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco31I	GGTCTC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	355
EcoT22I	ATGCAT	3 cut(s)	24, 257, 291
FaeI	CATG	3 cut(s)	22, 26, 289
FaiI	YATR	9 cut(s)	15, 20, 24, 148, 253, 257, 287, 435, 512
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	3 cut(s)	18, 22, 285
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	417
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	88
GsaI	CCCAGC	1 cut(s)	411
HaeIII	GGCC	2 cut(s)	44, 90
HapII	CCGG	2 cut(s)	348, 496
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	3 cut(s)	22, 26, 289
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HindIII	AAGCTT	1 cut(s)	172
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	2 cut(s)	348, 496
Hpy166II	GTNNAC	1 cut(s)	344
Hpy188I	TCNGA	3 cut(s)	37, 278, 443
Hpy188III	TCNNGA	6 cut(s)	8, 137, 238, 301, 329, 363
Hpy8I	GTNNAC	1 cut(s)	344
HpyAV	CCTTC	3 cut(s)	34, 143, 157
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	3 cut(s)	22, 255, 289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 261
HpySE526I	ACGT	1 cut(s)	505
Hsp92II	CATG	3 cut(s)	22, 26, 289
HspAI	GCGC	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	217
KspI	CCGCGG	1 cut(s)	210
Kzo9I	GATC	6 cut(s)	217, 273, 303, 359, 374, 443
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	10, 76
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	6 cut(s)	219, 275, 305, 361, 376, 445
MboI	GATC	6 cut(s)	217, 273, 303, 359, 374, 443
MboII	GAAGA	3 cut(s)	344, 384, 390
MflI	RGATCY	1 cut(s)	374
MluCI	AATT	2 cut(s)	97, 427
Mph1103I	ATGCAT	3 cut(s)	24, 257, 291
MroXI	GAANNNNTTC	1 cut(s)	469
MseI	TTAA	1 cut(s)	113
MspA1I	CMGCKG	3 cut(s)	87, 209, 389
MspI	CCGG	2 cut(s)	348, 496
MspR9I	CCNGG	3 cut(s)	348, 357, 497
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	2 cut(s)	209, 294
MwoI	GCNNNNNNNGC	2 cut(s)	206, 261
NciI	CCSGG	2 cut(s)	348, 497
NdeII	GATC	6 cut(s)	217, 273, 303, 359, 374, 443
NlaIII	CATG	3 cut(s)	22, 26, 289
NlaIV	GGNNCC	3 cut(s)	6, 189, 466
NmuCI	GTSAC	1 cut(s)	211
NsiI	ATGCAT	3 cut(s)	24, 257, 291
PciSI	GCTCTTC	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	469
PfeI	GAWTC	1 cut(s)	422
PkrI	GCNGC	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	355
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	3 cut(s)	6, 189, 466
PspPI	GGNCC	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	374
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	158, 489
RsaNI	GTAC	2 cut(s)	157, 488
SacII	CCGCGG	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	6 cut(s)	217, 273, 303, 359, 374, 443
Sau96I	GGNCC	1 cut(s)	187
ScrFI	CCNGG	3 cut(s)	348, 357, 497
SetI	ASST	7 cut(s)	59, 81, 156, 176, 391, 452, 508
SfaNI	GCATC	1 cut(s)	298
Sfr303I	CCGCGG	1 cut(s)	210
SgrBI	CCGCGG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	187
Sse9I	AATT	2 cut(s)	97, 427
SsiI	CCGC	4 cut(s)	87, 207, 209, 456
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	3 cut(s)	346, 355, 495
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	1 cut(s)	446
TasI	AATT	2 cut(s)	97, 427
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	2 cut(s)	220, 409
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	384
TspRI	CASTG	2 cut(s)	220, 409
VpaK11BI	GGWCC	1 cut(s)	187
XapI	RAATTY	2 cut(s)	97, 427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	343
XmnI	GAANNNNTTC	1 cut(s)	469
XspI	CTAG	1 cut(s)	417
Zsp2I	ATGCAT	3 cut(s)	24, 257, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.