pycom13g04270

Decapping 5-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
2872783 .. 2875199
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g04270.1

Sequence Viewer

Length: 1404 bp
ATGGGACTCCCTGGTCCAAATTTCCAAGGTAGTTTACCTTTATATCAACCTGGAGGCAATTTAGCGTCATGGGGTGGTACGCCGCCTCCTCCAAGTGCAAATGGTATGCCAATGTATTGGCAAGGATACTATGGCTCTCCAAATGGGCTACCTCATTTACACCAGCAGTCATTGCTTCGACCACCACCTGGGCTGTCAATGCCTTCTTCACTGCAGCAGCCACTGCAGTACCCCAATTTTACTCCCTCCTTACCTACTGGAGCTTCAAACTTGCCCTCAAACTTGCCTGAAGTTCCACCACCTTTGCTTCCTGCTGCTAGTATTAGTTCCTCTAGTTTGACTGCTACTTCTTTATCCCCGTCAACATTGCCAACAACTCTGCCTCCAGTGCCTTCTACAACATTATCTCTTGAAACTCTACCAAGCTCAATGCCTGACAAAGCACCTTGTTCTGCCCCCTCTGACAAAGCACCACTATCTTCTGTGGCTACTTCAAGCCCAGATATAAGTGTTGTGCCACCAATCTCTAACAAGCCTCATGCAATTTCTGGTCCAACCTTGCCTTATCCAAGCGTATCTCAAACGACTTCCTCTGTTGCTGGGACAGCCAATTCTTTACGCATGGAAACACTAGTGCCTTCTTTGGTAACCCCAGGCCAGCTTTTGCAGTCGGGATCCGCTACAGTCTCTTCATCTCAATCTCTGCAAACAGCTCACAAGGATGTGGAGGTTGTACAAGTTTCATCATCAACCTCATCAGAACCATTGGTTCCACTTTCAGCAGAACCTCAGCCACCAATATTGCCACTTCCTCAACAACCTGCACAGGCTGGTCAAAAGGACTATGTGCGTTCTCAGCCAAATGGAGCTCCATACCAAAATCAAAATCGCCAGGGTTATACATATAGGGGACGTGAAAGAGGACGGGGGACTGGGAGTTCACGTCCCATAACAAAATTCACTGAAGAATTTGATTTCATGGCAATGAATGAGAAGTTCAACAAGGATGAGGTTTGGGGTCATCTTGGCAAGAGTAAGAAACCTCACAAAGAGGGTGATGGGAATGACAGTGATGAAGATGACATTGAAGATGAAGACGAGGCTGAGTTATCGAAGGTTGAAATCAAGCCCGTCTACGATAAGGATGACTTCTTTGATACCATCTCGTGCAATTCTATGAGTCATGACCAGAATGGAAGGACAAGATACTCTGAGCAAATAAAGATAGATACAGAGACTTTTGGCGCTTTTTCAAGGTACCGGGGTGGAAGAGGCGGCCGTGGTCTTGGGCGTGGTGGCCGTGGTCGTGGTGGCTACTATGGAAGGGGTTATGGAGGTGGTGGCGCCTATGTCCCAAGGGGCCGTGGCCGGGCCATGCCCACTCGTGCTGCCTATGAGAGTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

468

Amino Acids

49.6

Weight (kDa)

6.41

Isoelectric Point (pI)

59.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FDF PF09532 319 - 417 1.6e-16 FDF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 12
Acc36I ACCTGC 1 cut(s) 829
Acc65I GGTACC 1 cut(s) 1257
AccB1I GGYRCC 2 cut(s) 1257, 1343
AccB7I CCANNNNNTGG 1 cut(s) 188
AccI GTMKAC 1 cut(s) 1134
AciI CCGC 3 cut(s) 83, 678, 1275
AclWI GGATC 2 cut(s) 669, 682
AcoI YGGCCR 3 cut(s) 1276, 1297, 1366
AcsI RAATTY 3 cut(s) 19, 956, 968
AcuI CTGAAG 2 cut(s) 309, 984
AcyI GRCGYC 1 cut(s) 1344
AfaI GTAC 4 cut(s) 79, 230, 735, 1259
AfiI CCNNNNNNNGG 2 cut(s) 188, 1369
AgsI TTSAA 7 cut(s) 267, 413, 495, 1000, 1088, 1121, 1254
AhlI ACTAGT 1 cut(s) 631
AjiI CACGTC 2 cut(s) 914, 944
AjnI CCWGG 5 cut(s) 10, 49, 187, 652, 891
AloI GAACNNNNNNTCC 2 cut(s) 922, 954
AluBI AGCT 5 cut(s) 263, 426, 661, 713, 869
AluI AGCT 5 cut(s) 263, 426, 661, 713, 869
Alw21I GWGCWC 1 cut(s) 871
Alw26I GTCTC 2 cut(s) 691, 1229
AlwI GGATC 2 cut(s) 669, 682
AlwNI CAGNNNCTG 1 cut(s) 223
AoxI GGCC 6 cut(s) 655, 1276, 1297, 1360, 1366, 1371
ApeKI GCWGC 4 cut(s) 214, 217, 314, 1388
ApoI RAATTY 3 cut(s) 19, 956, 968
Asp718I GGTACC 1 cut(s) 1257
AspLEI GCGC 2 cut(s) 1247, 1346
AspS9I GGNCC 4 cut(s) 14, 551, 1360, 1371
AsuC2I CCSGG 2 cut(s) 1262, 1370
AsuHPI GGTGA 1 cut(s) 1067
AvaII GGWCC 2 cut(s) 14, 551
BaeI ACNNNNGTAYC 4 cut(s) 212, 245, 1249, 1282
BamHI GGATCC 1 cut(s) 674
BanI GGYRCC 2 cut(s) 1257, 1343
BanII GRGCYC 1 cut(s) 871
BauI CACGAG 2 cut(s) 1165, 1383
BbsI GAAGAC 1 cut(s) 1101
Bbv12I GWGCWC 1 cut(s) 871
BbvCI CCTCAGC 1 cut(s) 789
BbvI GCAGC 4 cut(s) 226, 229, 301, 1375
BccI CCATC 2 cut(s) 1052, 1169
BceAI ACGGC 3 cut(s) 1263, 1284, 1347
BciT130I CCWGG 5 cut(s) 12, 51, 189, 654, 893
BciVI GTATCC 1 cut(s) 119
BcnI CCSGG 2 cut(s) 1262, 1370
BcoDI GTCTC 2 cut(s) 691, 1229
BcuI ACTAGT 1 cut(s) 631
BfaI CTAG 3 cut(s) 318, 333, 632
BfmI CTRYAG 3 cut(s) 212, 224, 681
BfoI RGCGCY 2 cut(s) 1248, 1347
BfuAI ACCTGC 1 cut(s) 829
BfuI GTATCC 1 cut(s) 119
BisI GCNGC 6 cut(s) 83, 215, 218, 315, 1276, 1389
BlsI GCNGC 6 cut(s) 84, 216, 219, 316, 1277, 1390
Bme1390I CCNGG 7 cut(s) 12, 51, 189, 654, 893, 1262, 1370
Bme18I GGWCC 2 cut(s) 14, 551
BmgBI CACGTC 2 cut(s) 914, 944
BmgT120I GGNCC 4 cut(s) 14, 551, 1360, 1371
BmiI GGNNCC 5 cut(s) 676, 771, 1259, 1345, 1361
BmrFI CCNGG 7 cut(s) 12, 51, 189, 654, 893, 1262, 1370
BmrI ACTGGG 1 cut(s) 942
BmuI ACTGGG 1 cut(s) 942
BpiI GAAGAC 1 cut(s) 1101
BpmI CTGGAG 3 cut(s) 72, 279, 369
Bpu10I CCTNAGC 1 cut(s) 789
BpuMI CCSGG 2 cut(s) 1262, 1370
BsaHI GRCGYC 1 cut(s) 1344
BsaXI ACNNNNNCTCC 6 cut(s) 70, 100, 367, 397, 928, 958
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 1369
Bse1I ACTGG 3 cut(s) 262, 386, 937
Bse3DI GCAATG 3 cut(s) 170, 365, 990
BseBI CCWGG 5 cut(s) 12, 51, 189, 654, 893
BseGI GGATG 3 cut(s) 727, 1012, 1150
BseLI CCNNNNNNNGG 2 cut(s) 188, 1369
BseMI GCAATG 3 cut(s) 170, 365, 990
BseMII CTCAG 4 cut(s) 803, 869, 1095, 1203
BseNI ACTGG 3 cut(s) 262, 386, 937
BseRI GAGGAG 1 cut(s) 78
BseX3I CGGCCG 1 cut(s) 1276
BseXI GCAGC 4 cut(s) 226, 229, 301, 1375
BseYI CCCAGC 1 cut(s) 599
BsgI GTGCAG 1 cut(s) 807
Bsh1285I CGRYCG 1 cut(s) 1279
BshFI GGCC 6 cut(s) 657, 1278, 1299, 1362, 1368, 1373
BshNI GGYRCC 2 cut(s) 1257, 1343
BsiEI CGRYCG 1 cut(s) 1279
BsiHKAI GWGCWC 1 cut(s) 871
BsiSI CCGG 2 cut(s) 1261, 1369
BslFI GGGAC 6 cut(s) 18, 616, 924, 930, 943, 1337
BslI CCNNNNNNNGG 2 cut(s) 188, 1369
BsmAI GTCTC 2 cut(s) 691, 1229
BsmFI GGGAC 6 cut(s) 18, 616, 924, 930, 943, 1337
BsnI GGCC 6 cut(s) 657, 1278, 1299, 1362, 1368, 1373
Bsp1286I GDGCHC 1 cut(s) 871
Bsp1407I TGTACA 1 cut(s) 733
Bsp143I GATC 1 cut(s) 674
BspACI CCGC 3 cut(s) 83, 678, 1275
BspANI GGCC 6 cut(s) 657, 1278, 1299, 1362, 1368, 1373
BspCNI CTCAG 4 cut(s) 802, 868, 1096, 1204
BspHI TCATGA 1 cut(s) 1183
BspLI GGNNCC 5 cut(s) 676, 771, 1259, 1345, 1361
BspMAI CTGCAG 2 cut(s) 216, 228
BspMI ACCTGC 1 cut(s) 829
BspPI GGATC 2 cut(s) 669, 682
BspT107I GGYRCC 2 cut(s) 1257, 1343
BsrDI GCAATG 3 cut(s) 170, 365, 990
BsrGI TGTACA 1 cut(s) 733
BsrI ACTGG 3 cut(s) 262, 386, 937
BssMI GATC 1 cut(s) 674
BssNI GRCGYC 1 cut(s) 1344
BssSI CACGAG 2 cut(s) 1165, 1383
BssT1I CCWWGG 2 cut(s) 25, 1355
Bst2BI CACGAG 2 cut(s) 1165, 1383
Bst2UI CCWGG 5 cut(s) 12, 51, 189, 654, 893
Bst4CI ACNGT 2 cut(s) 685, 1070
Bst6I CTCTTC 2 cut(s) 694, 1264
BstACI GRCGYC 1 cut(s) 1344
BstAPI GCANNNNNTGC 2 cut(s) 172, 223
BstAUI TGTACA 1 cut(s) 733
BstC8I GCNNGC 1 cut(s) 659
BstDEI CTNAG 4 cut(s) 789, 855, 1104, 1212
BstDSI CCRYGG 3 cut(s) 1279, 1300, 1363
BstEII GGTNACC 1 cut(s) 646
BstF5I GGATG 3 cut(s) 727, 1012, 1150
BstH2I RGCGCY 2 cut(s) 1248, 1347
BstHHI GCGC 2 cut(s) 1247, 1346
BstKTI GATC 1 cut(s) 677
BstMAI GTCTC 2 cut(s) 691, 1229
BstMBI GATC 1 cut(s) 674
BstMCI CGRYCG 1 cut(s) 1279
BstMWI GCNNNNNNNGC 6 cut(s) 172, 199, 223, 388, 605, 856
BstNI CCWGG 5 cut(s) 12, 51, 189, 654, 893
BstPI GGTNACC 1 cut(s) 646
BstSCI CCNGG 7 cut(s) 10, 49, 187, 652, 891, 1260, 1368
BstSFI CTRYAG 3 cut(s) 212, 224, 681
BstV1I GCAGC 4 cut(s) 226, 229, 301, 1375
BstV2I GAAGAC 1 cut(s) 1101
BstX2I RGATCY 1 cut(s) 674
BstXI CCANNNNNNTGG 1 cut(s) 117
BstYI RGATCY 1 cut(s) 674
BstZI CGGCCG 1 cut(s) 1276
BsuI GTATCC 1 cut(s) 119
BsuRI GGCC 6 cut(s) 657, 1278, 1299, 1362, 1368, 1373
BtgI CCRYGG 3 cut(s) 1279, 1300, 1363
BtrI CACGTC 2 cut(s) 914, 944
BtsCI GGATG 3 cut(s) 727, 1012, 1150
BtsI GCAGTG 2 cut(s) 209, 221
BtsIMutI CAGTG 5 cut(s) 209, 221, 393, 960, 1075
BveI ACCTGC 1 cut(s) 829
Cac8I GCNNGC 1 cut(s) 659
CaiI CAGNNNCTG 1 cut(s) 223
CciI TCATGA 1 cut(s) 1183
CfoI GCGC 2 cut(s) 1247, 1346
Cfr13I GGNCC 4 cut(s) 14, 551, 1360, 1371
CseI GACGC 1 cut(s) 54
Csp6I GTAC 4 cut(s) 78, 229, 734, 1258
CspCI CAANNNNNGTGG 4 cut(s) 285, 320, 783, 818
CviAII CATG 6 cut(s) 69, 539, 622, 979, 1184, 1375
CviQI GTAC 4 cut(s) 78, 229, 734, 1258
DdeI CTNAG 4 cut(s) 789, 855, 1104, 1212
DinI GGCGCC 1 cut(s) 1345
DpnI GATC 1 cut(s) 676
DpnII GATC 1 cut(s) 674
DrdI GACNNNNNNGTC 1 cut(s) 12
DseDI GACNNNNNNGTC 1 cut(s) 12
EaeI YGGCCR 3 cut(s) 1276, 1297, 1366
EagI CGGCCG 1 cut(s) 1276
Eam1104I CTCTTC 2 cut(s) 694, 1264
EarI CTCTTC 2 cut(s) 694, 1264
Ecl136II GAGCTC 1 cut(s) 869
EclXI CGGCCG 1 cut(s) 1276
Eco130I CCWWGG 2 cut(s) 25, 1355
Eco24I GRGCYC 1 cut(s) 871
Eco47I GGWCC 2 cut(s) 14, 551
Eco52I CGGCCG 1 cut(s) 1276
Eco53kI GAGCTC 1 cut(s) 869
Eco57I CTGAAG 2 cut(s) 309, 984
Eco91I GGTNACC 1 cut(s) 646
EcoICRI GAGCTC 1 cut(s) 869
EcoO65I GGTNACC 1 cut(s) 646
EcoRII CCWGG 5 cut(s) 10, 49, 187, 652, 891
EcoT14I CCWWGG 2 cut(s) 25, 1355
EcoT38I GRGCYC 1 cut(s) 871
EgeI GGCGCC 1 cut(s) 1345
EheI GGCGCC 1 cut(s) 1345
ErhI CCWWGG 2 cut(s) 25, 1355
FaeI CATG 6 cut(s) 72, 542, 625, 982, 1187, 1378
FalI AAGNNNNNCTT 2 cut(s) 1133, 1165
FaqI GGGAC 6 cut(s) 18, 616, 924, 930, 943, 1337
FatI CATG 6 cut(s) 68, 538, 621, 978, 1183, 1374
FblI GTMKAC 1 cut(s) 1134
Fnu4HI GCNGC 6 cut(s) 83, 215, 218, 315, 1276, 1389
FokI GGATG 3 cut(s) 734, 1019, 1157
FriOI GRGCYC 1 cut(s) 871
Fsp4HI GCNGC 6 cut(s) 83, 215, 218, 315, 1276, 1389
FspBI CTAG 3 cut(s) 318, 333, 632
GlaI GCGC 2 cut(s) 1246, 1345
GluI GCNGC 6 cut(s) 83, 215, 218, 315, 1276, 1389
GsaI CCCAGC 1 cut(s) 603
GsuI CTGGAG 3 cut(s) 72, 279, 369
HaeII RGCGCY 2 cut(s) 1248, 1347
HaeIII GGCC 6 cut(s) 657, 1278, 1299, 1362, 1368, 1373
HapII CCGG 2 cut(s) 1261, 1369
HgaI GACGC 1 cut(s) 54
HhaI GCGC 2 cut(s) 1247, 1346
Hin1I GRCGYC 1 cut(s) 1344
Hin1II CATG 6 cut(s) 72, 542, 625, 982, 1187, 1378
Hin6I GCGC 2 cut(s) 1245, 1344
HinP1I GCGC 2 cut(s) 1245, 1344
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HinfI GANTC 2 cut(s) 6, 1180
HpaII CCGG 2 cut(s) 1261, 1369
HphI GGTGA 1 cut(s) 1067
Hpy166II GTNNAC 4 cut(s) 35, 363, 941, 1135
Hpy188I TCNGA 3 cut(s) 463, 760, 1213
Hpy188III TCNNGA 3 cut(s) 410, 672, 1184
Hpy8I GTNNAC 4 cut(s) 35, 363, 941, 1135
HpyAV CCTTC 6 cut(s) 213, 402, 648, 1108, 1191, 1317
HpyCH4III ACNGT 2 cut(s) 685, 1070
HpyCH4IV ACGT 2 cut(s) 913, 943
HpyCH4V TGCA 8 cut(s) 98, 214, 226, 542, 667, 706, 824, 1170
HpyF10VI GCNNNNNNNGC 6 cut(s) 172, 199, 223, 388, 605, 856
HpyF3I CTNAG 4 cut(s) 789, 855, 1104, 1212
HpySE526I ACGT 2 cut(s) 913, 943
Hsp92I GRCGYC 1 cut(s) 1344
Hsp92II CATG 6 cut(s) 72, 542, 625, 982, 1187, 1378
HspAI GCGC 2 cut(s) 1245, 1344
KasI GGCGCC 1 cut(s) 1343
KpnI GGTACC 1 cut(s) 1261
Kzo9I GATC 1 cut(s) 674
LmnI GCTCC 3 cut(s) 260, 866, 874
Lsp1109I GCAGC 4 cut(s) 226, 229, 301, 1375
MaeI CTAG 3 cut(s) 318, 333, 632
MaeII ACGT 2 cut(s) 913, 943
MaeIII GTNAC 1 cut(s) 646
MalI GATC 1 cut(s) 676
MboI GATC 1 cut(s) 674
MboII GAAGA 8 cut(s) 198, 471, 681, 977, 1088, 1100, 1106, 1281
MflI RGATCY 1 cut(s) 674
MhlI GDGCHC 1 cut(s) 871
MluCI AATT 8 cut(s) 19, 58, 235, 543, 610, 956, 968, 1171
Mly113I GGCGCC 1 cut(s) 1344
MlyI GAGTC 1 cut(s) 1189
MmeI TCCRAC 1 cut(s) 578
MslI CAYNNNNRTG 2 cut(s) 720, 983
MspI CCGG 2 cut(s) 1261, 1369
MspR9I CCNGG 7 cut(s) 12, 51, 189, 654, 893, 1262, 1370
MvaI CCWGG 5 cut(s) 12, 51, 189, 654, 893
MwoI GCNNNNNNNGC 6 cut(s) 172, 199, 223, 388, 605, 856
NarI GGCGCC 1 cut(s) 1344
NciI CCSGG 2 cut(s) 1262, 1370
NdeII GATC 1 cut(s) 674
NlaIII CATG 6 cut(s) 72, 542, 625, 982, 1187, 1378
NlaIV GGNNCC 5 cut(s) 676, 771, 1259, 1345, 1361
PagI TCATGA 1 cut(s) 1183
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 6 cut(s) 84, 216, 219, 316, 1277, 1390
PleI GAGTC 1 cut(s) 1188
PluTI GGCGCC 1 cut(s) 1347
PpsI GAGTC 1 cut(s) 1188
Psp124BI GAGCTC 1 cut(s) 871
Psp6I CCWGG 5 cut(s) 10, 49, 187, 652, 891
PspEI GGTNACC 1 cut(s) 646
PspFI CCCAGC 1 cut(s) 599
PspGI CCWGG 5 cut(s) 10, 49, 187, 652, 891
PspN4I GGNNCC 5 cut(s) 676, 771, 1259, 1345, 1361
PspPI GGNCC 4 cut(s) 14, 551, 1360, 1371
PstI CTGCAG 2 cut(s) 216, 228
PstNI CAGNNNCTG 1 cut(s) 223
PsuI RGATCY 1 cut(s) 674
RsaI GTAC 4 cut(s) 79, 230, 735, 1259
RsaNI GTAC 4 cut(s) 78, 229, 734, 1258
RseI CAYNNNNRTG 2 cut(s) 720, 983
SacI GAGCTC 1 cut(s) 871
SatI GCNGC 6 cut(s) 83, 215, 218, 315, 1276, 1389
Sau3AI GATC 1 cut(s) 674
Sau96I GGNCC 4 cut(s) 14, 551, 1360, 1371
SchI GAGTC 1 cut(s) 1189
ScrFI CCNGG 7 cut(s) 12, 51, 189, 654, 893, 1262, 1370
SduI GDGCHC 1 cut(s) 871
SfcI CTRYAG 3 cut(s) 212, 224, 681
SfoI GGCGCC 1 cut(s) 1345
SinI GGWCC 2 cut(s) 14, 551
SmiMI CAYNNNNRTG 2 cut(s) 720, 983
SpeI ACTAGT 1 cut(s) 631
Sse9I AATT 8 cut(s) 19, 58, 235, 543, 610, 956, 968, 1171
SsiI CCGC 3 cut(s) 83, 678, 1275
SspDI GGCGCC 1 cut(s) 1343
SspI AATATT 1 cut(s) 801
SspMI CTAG 3 cut(s) 318, 333, 632
SstI GAGCTC 1 cut(s) 871
StyD4I CCNGG 7 cut(s) 10, 49, 187, 652, 891, 1260, 1368
StyI CCWWGG 2 cut(s) 25, 1355
TaaI ACNGT 2 cut(s) 685, 1070
TaiI ACGT 2 cut(s) 916, 946
TaqI TCGA 2 cut(s) 178, 1112
TasI AATT 8 cut(s) 19, 58, 235, 543, 610, 956, 968, 1171
TatI WGTACW 1 cut(s) 733
TauI GCSGC 2 cut(s) 85, 1278
TscAI CASTG 5 cut(s) 216, 228, 393, 967, 1075
TseI GCWGC 4 cut(s) 214, 217, 314, 1388
TspDTI ATGAA 6 cut(s) 681, 732, 967, 1001, 1089, 1107
TspRI CASTG 5 cut(s) 216, 228, 393, 967, 1075
Van91I CCANNNNNTGG 1 cut(s) 188
VpaK11BI GGWCC 2 cut(s) 14, 551
XapI RAATTY 3 cut(s) 19, 956, 968
XmiI GTMKAC 1 cut(s) 1134
XspI CTAG 3 cut(s) 318, 333, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.