Rmu_co7993828.1_g000001

Decapping 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7993828.1
OG0006026
Physical Location & Seq
Forward (+)
1 .. 442
442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7993828.1_g000001.1.cds

Sequence Viewer

Length: 282 bp
cctgtctacaataaggatgatttctttgacaccatctcctccaattctttcaataatgaacagaatggaaggactcggtactctgagcaaataaagatagatacagagacttttggaacattttcaaggtatcggggtggtcgaggtggccgtggtcctggacgtggtggccggggccgtgggggttactatggaagggactatggaagggattatggaaggggatatggctatgttggaaggggccgtggccgagggatgtctagtcaaggccctcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010603 GO:0010605 GO:0010606 GO:0010608 GO:0010629 GO:0010638 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0031086 GO:0031087 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031334 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033962 GO:0034248 GO:0034249 GO:0034622 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902115 GO:1902117 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FDF LSM14

Protein Analysis

93

Amino Acids

10.37

Weight (kDa)

10.21

Isoelectric Point (pI)

19.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 6
AcoI YGGCCR 3 cut(s) 148, 169, 250
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 2 cut(s) 52, 126
AjiI CACGTC 1 cut(s) 164
AjnI CCWGG 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 101
AoxI GGCC 6 cut(s) 148, 169, 175, 244, 250, 271
Asp700I GAANNNNTTC 1 cut(s) 121
AspS9I GGNCC 4 cut(s) 155, 175, 244, 272
AsuC2I CCSGG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 155
BccI CCATC 1 cut(s) 41
BceAI ACGGC 3 cut(s) 135, 162, 231
BciT130I CCWGG 1 cut(s) 159
BcnI CCSGG 1 cut(s) 173
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 264
Bme1390I CCNGG 2 cut(s) 159, 173
Bme18I GGWCC 1 cut(s) 155
BmgBI CACGTC 1 cut(s) 164
BmgT120I GGNCC 4 cut(s) 155, 175, 244, 272
BmiI GGNNCC 2 cut(s) 176, 245
BmrFI CCNGG 2 cut(s) 159, 173
BpuMI CCSGG 1 cut(s) 173
BsaJI CCNNGG 5 cut(s) 151, 172, 178, 247, 253
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 1 cut(s) 164
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 5 cut(s) 151, 172, 178, 247, 253
BseGI GGATG 2 cut(s) 22, 264
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 28
BshFI GGCC 6 cut(s) 150, 171, 177, 246, 252, 273
BsiSI CCGG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 6 cut(s) 150, 171, 177, 246, 252, 273
BspANI GGCC 6 cut(s) 150, 171, 177, 246, 252, 273
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 176, 245
BssECI CCNNGG 5 cut(s) 151, 172, 178, 247, 253
Bst2UI CCWGG 1 cut(s) 159
BstDEI CTNAG 2 cut(s) 84, 276
BstDSI CCRYGG 3 cut(s) 151, 178, 247
BstF5I GGATG 2 cut(s) 22, 264
BstMAI GTCTC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 2 cut(s) 157, 171
BsuRI GGCC 6 cut(s) 150, 171, 177, 246, 252, 273
BtgI CCRYGG 3 cut(s) 151, 178, 247
BtrI CACGTC 1 cut(s) 164
BtsCI GGATG 2 cut(s) 22, 264
Cfr13I GGNCC 4 cut(s) 155, 175, 244, 272
Csp6I GTAC 1 cut(s) 79
CviJI RGCY 7 cut(s) 150, 171, 177, 231, 246, 252, 273
CviKI_1 RGCY 7 cut(s) 150, 171, 177, 231, 246, 252, 273
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 2 cut(s) 84, 276
EaeI YGGCCR 3 cut(s) 148, 169, 250
Eco47I GGWCC 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 157
FaiI YATR 5 cut(s) 192, 204, 216, 228, 234
FaqI GGGAC 1 cut(s) 212
FblI GTMKAC 1 cut(s) 6
FokI GGATG 2 cut(s) 29, 271
FspBI CTAG 1 cut(s) 264
HaeIII GGCC 6 cut(s) 150, 171, 177, 246, 252, 273
HapII CCGG 1 cut(s) 172
HinfI GANTC 1 cut(s) 73
HpaII CCGG 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 1 cut(s) 85
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 5 cut(s) 63, 189, 201, 213, 234
HpyCH4IV ACGT 1 cut(s) 163
HpyF3I CTNAG 2 cut(s) 84, 276
HpySE526I ACGT 1 cut(s) 163
LpnPI CCDG 4 cut(s) 15, 144, 171, 185
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 185
MluCI AATT 1 cut(s) 43
MlyI GAGTC 1 cut(s) 67
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 3 cut(s) 49, 137, 248
MroXI GAANNNNTTC 1 cut(s) 121
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 2 cut(s) 159, 173
MvaI CCWGG 1 cut(s) 159
NciI CCSGG 1 cut(s) 173
NlaIV GGNNCC 2 cut(s) 176, 245
NmeAIII GCCGAG 1 cut(s) 278
PcsI WCGNNNNNNNCGW 2 cut(s) 139, 148
PdmI GAANNNNTTC 1 cut(s) 121
PfoI TCCNGGA 1 cut(s) 157
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 2 cut(s) 176, 245
PspPI GGNCC 4 cut(s) 155, 175, 244, 272
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
Sau96I GGNCC 4 cut(s) 155, 175, 244, 272
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 2 cut(s) 159, 173
SetI ASST 3 cut(s) 131, 148, 166
SinI GGWCC 1 cut(s) 155
Sse9I AATT 1 cut(s) 43
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 2 cut(s) 157, 171
TaiI ACGT 1 cut(s) 166
TaqI TCGA 1 cut(s) 142
TasI AATT 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 6
XmnI GAANNNNTTC 1 cut(s) 121
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.