Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018865.1

Orthogroup ID

OG0006026

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1948

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018865.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

gcaagcttgccaccactttcttctctgaccagttcaagcccagatataagtactgttgcaccatctatctctaacaagacttctatagtttctggcccagccttgccctatcaaagcgtatctcaatctccttcctctgttgctggggcatccaattccgtacgcatggaaacactggttccttctttggtaaccccagatcagctcttgcagtctggatctgctacaggcccctcagctcaatcgttgcaagcagctcataaggatgtggaggttgttcaagtttcgtcatcaacctcaccagagccgccagtcccagtatcagcagaacctcagccaccaatattgccattaccaccacctacacgggcaggtcaaaagacaaatggagctccattccaagctcgccagggatatacttatagggggcgtgagcgaggcaggggaactgggtttggtgtgcagagttcacgtcctgtaacaaaattcactgaagaatttgatttcacggcaatgaatgagaagttcaataaggatgaggtttggggccatcttggtaagagtagcaaaccttctaaggacaaagaggatggaaatgacagtgaagaagaatatatcgaagatgaagatgatgtggagttgccaaagtttgatgtcaagcctgtctacaataaggatgatttctttgacaccatctcctccaattctttcaataatgaacagaatggaaggactcggtactctgagcaaataaagatagatacagagacttttggaacattttcaaggtatcggggtggtcgaggtggccgtggtcctggacgtggtggccggggccgtgggggttactatggaagggactatggaagggattatggaaggggatatggctatgttggaaggggccgtggccgagggatgtctagtcaaggccctcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010603 GO:0010605 GO:0010606 GO:0010608 GO:0010629 GO:0010638 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0031086 GO:0031087 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031334 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033962 GO:0034248 GO:0034249 GO:0034622 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902115 GO:1902117 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FDF LSM14

Protein Analysis

313

Amino Acids

33.71

Weight (kDa)

7.02

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26110 AT1G26110
fragaria_vesca	FvH4_4g28240 FvH4_4g28240 FvH4_4g28240 FvH4_4g28240 FvH4_4g28240 FvH4_4g28240
malus_domestica	MD13G1048400.v1.1 MD16G1049700.v1.1
prunus_persica	Prupe.1G303800_v2.0.a1 Prupe.1G303800_v2.0.a1 Prupe.1G303800_v2.0.a1
pyrus_communis	pycom13g04270 pycom16g04320
rosa_chinensis	RchiOBHm_Chr4g0436041
rosa_laevigata	RLG00000006540
rosa_multiflora	Rmu_co7993828.1_g000001 Rmu_sc0018865.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377180
rosa_rugosa	Rorug04G0291400 Rorug04G0291500
rosa_samantha	Rh4AG345700 Rh4BG354700 Rh4CG369200 Rh4DG348400
rosa_wichuraiana	Rw4G030230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	666
AciI	CCGC	1 cut(s)	308
AclWI	GGATC	1 cut(s)	226
AcoI	YGGCCR	3 cut(s)	808, 829, 910
AcsI	RAATTY	2 cut(s)	485, 497
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	3 cut(s)	52, 162, 740
AfiI	CCNNNNNNNGG	1 cut(s)	824
AgsI	TTSAA	5 cut(s)	36, 281, 529, 712, 786
AjiI	CACGTC	2 cut(s)	473, 824
AjnI	CCWGG	2 cut(s)	408, 817
AluBI	AGCT	6 cut(s)	6, 205, 239, 257, 392, 404
AluI	AGCT	6 cut(s)	6, 205, 239, 257, 392, 404
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	761
AlwI	GGATC	1 cut(s)	226
AoxI	GGCC	9 cut(s)	94, 229, 547, 808, 829, 835, 904, 910, 931
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	2 cut(s)	485, 497
Asp700I	GAANNNNTTC	1 cut(s)	781
AspS9I	GGNCC	7 cut(s)	95, 230, 547, 815, 835, 904, 932
AsuC2I	CCSGG	1 cut(s)	833
AsuHPI	GGTGA	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	815
BanII	GRGCYC	1 cut(s)	394
BarI	GAAGNNNNNNTAC	2 cut(s)	556, 588
Bbv12I	GWGCWC	1 cut(s)	394
BbvCI	CCTCAGC	2 cut(s)	235, 333
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	4 cut(s)	70, 558, 584, 701
BceAI	ACGGC	4 cut(s)	525, 795, 822, 891
BciT130I	CCWGG	2 cut(s)	410, 819
BcnI	CCSGG	1 cut(s)	833
BcoDI	GTCTC	1 cut(s)	761
BfaI	CTAG	1 cut(s)	924
BfmI	CTRYAG	2 cut(s)	84, 225
BfuAI	ACCTGC	1 cut(s)	362
BisI	GCNGC	2 cut(s)	255, 308
BlsI	GCNGC	2 cut(s)	256, 309
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	3 cut(s)	410, 819, 833
Bme18I	GGWCC	1 cut(s)	815
BmgBI	CACGTC	2 cut(s)	473, 824
BmgT120I	GGNCC	7 cut(s)	95, 230, 547, 815, 835, 904, 932
BmiI	GGNNCC	5 cut(s)	180, 232, 548, 836, 905
BmrFI	CCNGG	3 cut(s)	410, 819, 833
BmrI	ACTGGG	2 cut(s)	311, 459
BmsI	GCATC	1 cut(s)	158
BmuI	ACTGGG	2 cut(s)	311, 459
Bpu10I	CCTNAGC	2 cut(s)	235, 333
BpuMI	CCSGG	1 cut(s)	833
BsaJI	CCNNGG	6 cut(s)	409, 811, 832, 838, 907, 913
BsaXI	ACNNNNNCTCC	2 cut(s)	680, 710
Bsc4I	CCNNNNNNNGG	1 cut(s)	824
Bse1I	ACTGG	5 cut(s)	30, 180, 311, 317, 454
Bse3DI	GCAATG	1 cut(s)	519
BseBI	CCWGG	2 cut(s)	410, 819
BseDI	CCNNGG	6 cut(s)	409, 811, 832, 838, 907, 913
BseGI	GGATG	6 cut(s)	149, 271, 541, 595, 682, 924
BseLI	CCNNNNNNNGG	1 cut(s)	824
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	3 cut(s)	249, 347, 735
BseNI	ACTGG	5 cut(s)	30, 180, 311, 317, 454
BseRI	GAGGAG	1 cut(s)	688
BseXI	GCAGC	1 cut(s)	266
BseYI	CCCAGC	2 cut(s)	97, 143
BsgI	GTGCAG	1 cut(s)	482
BshFI	GGCC	9 cut(s)	96, 231, 549, 810, 831, 837, 906, 912, 933
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	832
BsiWI	CGTACG	1 cut(s)	160
BslFI	GGGAC	2 cut(s)	299, 872
BslI	CCNNNNNNNGG	1 cut(s)	824
BsmAI	GTCTC	1 cut(s)	761
BsmFI	GGGAC	2 cut(s)	299, 872
BsnI	GGCC	9 cut(s)	96, 231, 549, 810, 831, 837, 906, 912, 933
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	2 cut(s)	199, 218
BspACI	CCGC	1 cut(s)	308
BspANI	GGCC	9 cut(s)	96, 231, 549, 810, 831, 837, 906, 912, 933
BspCNI	CTCAG	3 cut(s)	248, 346, 736
BspLI	GGNNCC	5 cut(s)	180, 232, 548, 836, 905
BspMI	ACCTGC	1 cut(s)	362
BspPI	GGATC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	5 cut(s)	30, 180, 311, 317, 454
BssECI	CCNNGG	6 cut(s)	409, 811, 832, 838, 907, 913
BssMI	GATC	2 cut(s)	199, 218
Bst2UI	CCWGG	2 cut(s)	410, 819
Bst4CI	ACNGT	2 cut(s)	55, 602
BstC8I	GCNNGC	4 cut(s)	4, 8, 252, 406
BstDEI	CTNAG	5 cut(s)	235, 333, 576, 744, 936
BstDSI	CCRYGG	3 cut(s)	811, 838, 907
BstEII	GGTNACC	1 cut(s)	190
BstF5I	GGATG	6 cut(s)	149, 271, 541, 595, 682, 924
BstKTI	GATC	2 cut(s)	202, 221
BstMAI	GTCTC	1 cut(s)	761
BstMBI	GATC	2 cut(s)	199, 218
BstNI	CCWGG	2 cut(s)	410, 819
BstPI	GGTNACC	1 cut(s)	190
BstSCI	CCNGG	3 cut(s)	408, 817, 831
BstSFI	CTRYAG	2 cut(s)	84, 225
BstV1I	GCAGC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	9 cut(s)	96, 231, 549, 810, 831, 837, 906, 912, 933
BtgI	CCRYGG	3 cut(s)	811, 838, 907
BtrI	CACGTC	2 cut(s)	473, 824
BtsCI	GGATG	6 cut(s)	149, 271, 541, 595, 682, 924
BtsIMutI	CAGTG	3 cut(s)	173, 489, 607
BveI	ACCTGC	1 cut(s)	362
Cac8I	GCNNGC	4 cut(s)	4, 8, 252, 406
Cfr13I	GGNCC	7 cut(s)	95, 230, 547, 815, 835, 904, 932
Csp6I	GTAC	3 cut(s)	51, 161, 739
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	1 cut(s)	166
CviQI	GTAC	3 cut(s)	51, 161, 739
DdeI	CTNAG	5 cut(s)	235, 333, 576, 744, 936
DpnI	GATC	2 cut(s)	201, 220
DpnII	GATC	2 cut(s)	199, 218
EaeI	YGGCCR	3 cut(s)	808, 829, 910
Ecl136II	GAGCTC	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	815
Eco53kI	GAGCTC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	513
Eco91I	GGTNACC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	392
EcoO109I	RGGNCCY	2 cut(s)	230, 932
EcoO65I	GGTNACC	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	408, 817
EcoT38I	GRGCYC	1 cut(s)	394
FaeI	CATG	1 cut(s)	169
FaqI	GGGAC	2 cut(s)	299, 872
FatI	CATG	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	666
Fnu4HI	GCNGC	2 cut(s)	255, 308
FokI	GGATG	6 cut(s)	136, 278, 548, 602, 689, 931
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	2 cut(s)	255, 308
FspBI	CTAG	1 cut(s)	924
GluI	GCNGC	2 cut(s)	255, 308
GsaI	CCCAGC	2 cut(s)	101, 147
HaeIII	GGCC	9 cut(s)	96, 231, 549, 810, 831, 837, 906, 912, 933
HapII	CCGG	1 cut(s)	832
Hin1II	CATG	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	4
HinfI	GANTC	1 cut(s)	733
HpaII	CCGG	1 cut(s)	832
HphI	GGTGA	1 cut(s)	291
Hpy166II	GTNNAC	2 cut(s)	470, 667
Hpy188I	TCNGA	2 cut(s)	27, 745
Hpy188III	TCNNGA	1 cut(s)	216
Hpy8I	GTNNAC	2 cut(s)	470, 667
HpyAV	CCTTC	8 cut(s)	141, 192, 582, 723, 849, 861, 873, 894
HpyCH4III	ACNGT	2 cut(s)	55, 602
HpyCH4IV	ACGT	2 cut(s)	472, 823
HpyCH4V	TGCA	4 cut(s)	59, 211, 250, 463
HpyF3I	CTNAG	5 cut(s)	235, 333, 576, 744, 936
HpySE526I	ACGT	2 cut(s)	472, 823
Hsp92II	CATG	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	199, 218
LmnI	GCTCC	2 cut(s)	389, 397
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	1 cut(s)	158
MaeI	CTAG	1 cut(s)	924
MaeII	ACGT	2 cut(s)	472, 823
MaeIII	GTNAC	3 cut(s)	190, 478, 845
MalI	GATC	2 cut(s)	201, 220
MboI	GATC	2 cut(s)	199, 218
MboII	GAAGA	6 cut(s)	12, 506, 617, 620, 632, 638
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	4 cut(s)	154, 485, 497, 703
MlyI	GAGTC	1 cut(s)	727
MmeI	TCCRAC	1 cut(s)	877
MroXI	GAANNNNTTC	1 cut(s)	781
MslI	CAYNNNNRTG	2 cut(s)	264, 512
MspI	CCGG	1 cut(s)	832
MspR9I	CCNGG	3 cut(s)	410, 819, 833
MvaI	CCWGG	2 cut(s)	410, 819
NciI	CCSGG	1 cut(s)	833
NdeII	GATC	2 cut(s)	199, 218
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	5 cut(s)	180, 232, 548, 836, 905
NmeAIII	GCCGAG	1 cut(s)	938
PcsI	WCGNNNNNNNCGW	2 cut(s)	799, 808
PdmI	GAANNNNTTC	1 cut(s)	781
Pfl23II	CGTACG	1 cut(s)	160
PfoI	TCCNGGA	1 cut(s)	817
PkrI	GCNGC	2 cut(s)	256, 309
PleI	GAGTC	1 cut(s)	727
PpsI	GAGTC	1 cut(s)	727
Psp124BI	GAGCTC	1 cut(s)	394
Psp6I	CCWGG	2 cut(s)	408, 817
PspEI	GGTNACC	1 cut(s)	190
PspFI	CCCAGC	2 cut(s)	97, 143
PspGI	CCWGG	2 cut(s)	408, 817
PspLI	CGTACG	1 cut(s)	160
PspN4I	GGNNCC	5 cut(s)	180, 232, 548, 836, 905
PspPI	GGNCC	7 cut(s)	95, 230, 547, 815, 835, 904, 932
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	3 cut(s)	52, 162, 740
RsaNI	GTAC	3 cut(s)	51, 161, 739
RseI	CAYNNNNRTG	2 cut(s)	264, 512
SacI	GAGCTC	1 cut(s)	394
SatI	GCNGC	2 cut(s)	255, 308
Sau3AI	GATC	2 cut(s)	199, 218
Sau96I	GGNCC	7 cut(s)	95, 230, 547, 815, 835, 904, 932
ScaI	AGTACT	1 cut(s)	52
SchI	GAGTC	1 cut(s)	727
ScrFI	CCNGG	3 cut(s)	410, 819, 833
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	1 cut(s)	158
SfcI	CTRYAG	2 cut(s)	84, 225
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	2 cut(s)	264, 512
Sse9I	AATT	4 cut(s)	154, 485, 497, 703
SsiI	CCGC	1 cut(s)	308
SspI	AATATT	1 cut(s)	345
SspMI	CTAG	1 cut(s)	924
SstI	GAGCTC	1 cut(s)	394
StyD4I	CCNGG	3 cut(s)	408, 817, 831
TaaI	ACNGT	2 cut(s)	55, 602
TaiI	ACGT	2 cut(s)	475, 826
TaqI	TCGA	2 cut(s)	618, 802
TasI	AATT	4 cut(s)	154, 485, 497, 703
TatI	WGTACW	1 cut(s)	50
TauI	GCSGC	1 cut(s)	310
TscAI	CASTG	3 cut(s)	180, 496, 607
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	3 cut(s)	530, 639, 732
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	3 cut(s)	180, 496, 607
VpaK11BI	GGWCC	1 cut(s)	815
XapI	RAATTY	2 cut(s)	485, 497
XmiI	GTMKAC	1 cut(s)	666
XmnI	GAANNNNTTC	1 cut(s)	781
XspI	CTAG	1 cut(s)	924
ZrmI	AGTACT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.