Rh4DG348400

Decapping 5-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
57007164 .. 57011315
4152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG348400.1

Sequence Viewer

Length: 1359 bp
ATGGCTTCCGAGAGCGCTACGAGATCGAGCTCAGCGGCCGATTCGTACATAGGGAGCTTGATTAGTTTGACTTCCAAGAGTGAGATCAGATACGAAGGCGTGCTCTACAACATCAACACCGAAGAGTCCAGTATTGGACTCCGCAACGTACGGTCTTTTGGAACTGAAGGAAGGAAAAAGGATGGGCCACAAATCCCGCCAGGGGATAAAGTTTATGAGTATATACTCTTCCGTGGGAGTGATATCAAGGATTTACAGGTTAAATCTTCTCCACCAGTTCAGCCTACACCTCCTATAAACAATGATCCAGCTATTATTCAGTCTCACTATTCCCGCCCAGCTCCAACAACATCGAGCTTGCCTTCTCCTGCTAGTGGGCCTTTGACAGATATTAATCCCCATACTGCACAGATGGGACTACCTGGTTCAAATTTCCAAGGCAATTTACCTTTATATCAACCTGGAGGAAATTTAGGGTCATGGGGCGTTCCACCTCCTCCAAATGCAAATGGCGGAGGCCTTGCTATGCCAATGTACTGGCAAGGATATTACGGCCCTCCAAATGGCCTTCCTCATTTACACCAGCAATCTTTGCTTCGTCCACCGCCCGGTCTATCAATGCCTTCTCCAATGCAGCAGCCATTGCAATATCCCAATTTTAGTGCCTCCTTGTCCGCTGGACCTTCTAACTTTCCTGAAGGTCCATCACCTCTACTTTCGGCTGCTAGTGGTAGTTCTCCTAGTTTGACCTCTGCTTCTTTAGCACCGCCAATTGGCCCGATTTTGCCAACAACTCTGCCTCCGGTACCTTCCACCACACTCGCTTCTGAAATATTGTCAAGTTCAATGCCTAACAAGGCACTAAGTGGTTCCCCTTCTGTAGCCACACTTAGTGCAAGCTTGCCACCACTTTCTTCTCTGGCCAGTTCAAGCCCAGATATAAGTACTGTTGCACCATCTATCTCTAACAAGACTTCTATAGTTTCTGGTCCAACCTTGCCCTATCAAAGCGTATCTCAATCTCCTTCCTCTGTTGCTGGGGCAACCAATTCCGTACGCACGGAAACACTGGTTCCTTCTTTGGTAACCCCAGATCAGCTCTTGCAGTCTGGATCTGCTACAGGCCCCTCAGCTCAATCGTTGCAAGCAGCTCATAAGGATGTGGAGGTTGTTCAAGTTTCGTCATCAACCTCACCAGAGCCGCCAGTCCCAGTATCAGCAGAACCTCAGCCACCAATATTGCCATTACCACCACCTGCACGGGCAGGTCAAAAGGTGTTCTTCTGTCACACACATTTGTGTACTTGTTTGTCTTGTTATGCCGCCTGCTTGTATATCTGTTGCTATGTGGGTTTGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

452

Amino Acids

46.67

Weight (kDa)

6.15

Isoelectric Point (pI)

77.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SM-ATX PF14438 8 - 88 1e-12 Ataxin 2 SM domain
LSM14 PF12701 16 - 89 1.5e-32 Scd6-like Sm domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1264
Acc36I ACCTGC 2 cut(s) 1256, 1264
Acc65I GGTACC 1 cut(s) 805
AccB1I GGYRCC 1 cut(s) 805
AclWI GGATC 2 cut(s) 299, 1120
AcoI YGGCCR 2 cut(s) 36, 921
AcsI RAATTY 2 cut(s) 430, 469
AcuI CTGAAG 2 cut(s) 186, 717
AdeI CACNNNGTG 2 cut(s) 866, 893
AfaI GTAC 7 cut(s) 47, 150, 536, 807, 946, 1056, 1303
AfeI AGCGCT 1 cut(s) 16
AfiI CCNNNNNNNGG 5 cut(s) 202, 374, 563, 608, 773
AgsI TTSAA 4 cut(s) 429, 846, 930, 1175
AjnI CCWGG 3 cut(s) 199, 421, 460
AleI CACNNNNGTG 1 cut(s) 1297
AluBI AGCT 9 cut(s) 30, 57, 311, 341, 357, 900, 1099, 1133, 1151
AluI AGCT 9 cut(s) 30, 57, 311, 341, 357, 900, 1099, 1133, 1151
Alw21I GWGCWC 2 cut(s) 32, 105
Alw26I GTCTC 1 cut(s) 327
AlwI GGATC 2 cut(s) 299, 1120
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 9 cut(s) 36, 185, 377, 517, 553, 565, 775, 921, 1123
ApeKI GCWGC 4 cut(s) 634, 637, 722, 1148
ApoI RAATTY 2 cut(s) 430, 469
AseI ATTAAT 1 cut(s) 393
Asp718I GGTACC 1 cut(s) 805
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 8 cut(s) 185, 377, 554, 680, 701, 776, 989, 1124
AsuC2I CCSGG 1 cut(s) 609
AsuHPI GGTGA 2 cut(s) 699, 1185
AvaII GGWCC 3 cut(s) 680, 701, 989
BalI TGGCCA 1 cut(s) 923
BanI GGYRCC 1 cut(s) 805
BanII GRGCYC 1 cut(s) 32
BarI GAAGNNNNNNTAC 2 cut(s) 212, 244
Bbv12I GWGCWC 2 cut(s) 32, 105
BbvCI CCTCAGC 2 cut(s) 1129, 1227
BbvI GCAGC 4 cut(s) 646, 649, 709, 1160
BccI CCATC 4 cut(s) 176, 406, 712, 964
BceAI ACGGC 1 cut(s) 568
BciT130I CCWGG 3 cut(s) 201, 423, 462
BcnI CCSGG 1 cut(s) 609
BcoDI GTCTC 1 cut(s) 327
BfaI CTAG 3 cut(s) 372, 726, 741
BfmI CTRYAG 3 cut(s) 879, 978, 1119
BfoI RGCGCY 1 cut(s) 18
BfuAI ACCTGC 2 cut(s) 1256, 1264
BisI GCNGC 7 cut(s) 36, 635, 638, 723, 1149, 1202, 1323
BlpI GCTNAGC 1 cut(s) 31
BlsI GCNGC 7 cut(s) 37, 636, 639, 724, 1150, 1203, 1324
BmcAI AGTACT 1 cut(s) 946
Bme1390I CCNGG 4 cut(s) 201, 423, 462, 609
Bme18I GGWCC 3 cut(s) 680, 701, 989
BmgT120I GGNCC 8 cut(s) 185, 377, 554, 680, 701, 776, 989, 1124
BmiI GGNNCC 4 cut(s) 807, 871, 1074, 1126
BmrFI CCNGG 4 cut(s) 201, 423, 462, 609
BmrI ACTGGG 1 cut(s) 1205
BmuI ACTGGG 1 cut(s) 1205
BpmI CTGGAG 1 cut(s) 483
Bpu10I CCTNAGC 2 cut(s) 1129, 1227
Bpu1102I GCTNAGC 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 609
BsaBI GATNNNNATC 1 cut(s) 393
BsaJI CCNNGG 3 cut(s) 200, 232, 436
BsaWI WCCGGW 1 cut(s) 802
BsaXI ACNNNNNCTCC 2 cut(s) 784, 814
Bsc4I CCNNNNNNNGG 5 cut(s) 202, 374, 563, 608, 773
Bse1I ACTGG 7 cut(s) 129, 275, 542, 924, 1074, 1205, 1211
Bse3DI GCAATG 1 cut(s) 641
Bse8I GATNNNNATC 1 cut(s) 393
BseBI CCWGG 3 cut(s) 201, 423, 462
BseDI CCNNGG 3 cut(s) 200, 232, 436
BseGI GGATG 2 cut(s) 187, 1165
BseJI GATNNNNATC 1 cut(s) 393
BseLI CCNNNNNNNGG 5 cut(s) 202, 374, 563, 608, 773
BseMI GCAATG 1 cut(s) 641
BseMII CTCAG 3 cut(s) 45, 1143, 1241
BseNI ACTGG 7 cut(s) 129, 275, 542, 924, 1074, 1205, 1211
BseRI GAGGAG 1 cut(s) 486
BseX3I CGGCCG 1 cut(s) 36
BseXI GCAGC 4 cut(s) 646, 649, 709, 1160
BseYI CCCAGC 2 cut(s) 337, 1037
BsgI GTGCAG 2 cut(s) 390, 1242
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 9 cut(s) 38, 187, 379, 519, 555, 567, 777, 923, 1125
BshNI GGYRCC 1 cut(s) 805
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 2 cut(s) 32, 105
BsiSI CCGG 2 cut(s) 609, 803
BsiWI CGTACG 2 cut(s) 148, 1054
BslFI GGGAC 2 cut(s) 429, 1193
BslI CCNNNNNNNGG 5 cut(s) 202, 374, 563, 608, 773
BsmAI GTCTC 1 cut(s) 327
BsmFI GGGAC 2 cut(s) 429, 1193
BsnI GGCC 9 cut(s) 38, 187, 379, 519, 555, 567, 777, 923, 1125
Bsp1286I GDGCHC 2 cut(s) 32, 105
Bsp143I GATC 5 cut(s) 23, 84, 304, 1093, 1112
Bsp1720I GCTNAGC 1 cut(s) 31
BspANI GGCC 9 cut(s) 38, 187, 379, 519, 555, 567, 777, 923, 1125
BspCNI CTCAG 3 cut(s) 44, 1142, 1240
BspLI GGNNCC 4 cut(s) 807, 871, 1074, 1126
BspMI ACCTGC 2 cut(s) 1256, 1264
BspPI GGATC 2 cut(s) 299, 1120
BspT107I GGYRCC 1 cut(s) 805
BsrDI GCAATG 1 cut(s) 641
BsrI ACTGG 7 cut(s) 129, 275, 542, 924, 1074, 1205, 1211
BssECI CCNNGG 3 cut(s) 200, 232, 436
BssMI GATC 5 cut(s) 23, 84, 304, 1093, 1112
BssT1I CCWWGG 1 cut(s) 436
Bst2UI CCWGG 3 cut(s) 201, 423, 462
Bst4CI ACNGT 2 cut(s) 153, 949
Bst6I CTCTTC 2 cut(s) 117, 233
BstAPI GCANNNNNTGC 2 cut(s) 592, 643
BstC8I GCNNGC 6 cut(s) 101, 359, 898, 902, 1146, 1327
BstDEI CTNAG 5 cut(s) 31, 863, 890, 1129, 1227
BstDSI CCRYGG 1 cut(s) 232
BstEII GGTNACC 1 cut(s) 1084
BstF5I GGATG 2 cut(s) 187, 1165
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 5 cut(s) 26, 87, 307, 1096, 1115
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 5 cut(s) 23, 84, 304, 1093, 1112
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 3 cut(s) 592, 643, 761
BstNI CCWGG 3 cut(s) 201, 423, 462
BstPI GGTNACC 1 cut(s) 1084
BstSCI CCNGG 4 cut(s) 199, 421, 460, 607
BstSFI CTRYAG 3 cut(s) 879, 978, 1119
BstV1I GCAGC 4 cut(s) 646, 649, 709, 1160
BstX2I RGATCY 1 cut(s) 1112
BstXI CCANNNNNNTGG 1 cut(s) 537
BstYI RGATCY 1 cut(s) 1112
BstZI CGGCCG 1 cut(s) 36
BsuRI GGCC 9 cut(s) 38, 187, 379, 519, 555, 567, 777, 923, 1125
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 2 cut(s) 187, 1165
BtsIMutI CAGTG 1 cut(s) 1067
BveI ACCTGC 2 cut(s) 1256, 1264
Cac8I GCNNGC 6 cut(s) 101, 359, 898, 902, 1146, 1327
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 8 cut(s) 185, 377, 554, 680, 701, 776, 989, 1124
CsiI ACCWGGT 1 cut(s) 421
Csp6I GTAC 7 cut(s) 46, 149, 535, 806, 945, 1055, 1302
CspCI CAANNNNNGTGG 2 cut(s) 1221, 1256
CviAII CATG 1 cut(s) 480
CviQI GTAC 7 cut(s) 46, 149, 535, 806, 945, 1055, 1302
DdeI CTNAG 5 cut(s) 31, 863, 890, 1129, 1227
DpnI GATC 5 cut(s) 25, 86, 306, 1095, 1114
DpnII GATC 5 cut(s) 23, 84, 304, 1093, 1112
DraIII CACNNNGTG 2 cut(s) 866, 893
EaeI YGGCCR 2 cut(s) 36, 921
EagI CGGCCG 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 117, 233
EarI CTCTTC 2 cut(s) 117, 233
EciI GGCGGA 1 cut(s) 528
Ecl136II GAGCTC 1 cut(s) 30
EclXI CGGCCG 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 436
Eco147I AGGCCT 1 cut(s) 519
Eco24I GRGCYC 1 cut(s) 32
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 3 cut(s) 680, 701, 989
Eco47III AGCGCT 1 cut(s) 16
Eco52I CGGCCG 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 186, 717
Eco91I GGTNACC 1 cut(s) 1084
EcoICRI GAGCTC 1 cut(s) 30
EcoO109I RGGNCCY 1 cut(s) 1124
EcoO65I GGTNACC 1 cut(s) 1084
EcoRII CCWGG 3 cut(s) 199, 421, 460
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 436
FaeI CATG 1 cut(s) 483
FalI AAGNNNNNCTT 2 cut(s) 1265, 1297
FaqI GGGAC 2 cut(s) 429, 1193
FatI CATG 1 cut(s) 479
FauI CCCGC 2 cut(s) 204, 341
Fnu4HI GCNGC 7 cut(s) 36, 635, 638, 723, 1149, 1202, 1323
FokI GGATG 2 cut(s) 194, 1172
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 7 cut(s) 36, 635, 638, 723, 1149, 1202, 1323
FspBI CTAG 3 cut(s) 372, 726, 741
GlaI GCGC 1 cut(s) 16
GluI GCNGC 7 cut(s) 36, 635, 638, 723, 1149, 1202, 1323
GsaI CCCAGC 2 cut(s) 341, 1041
GsuI CTGGAG 1 cut(s) 483
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 9 cut(s) 38, 187, 379, 519, 555, 567, 777, 923, 1125
HapII CCGG 2 cut(s) 609, 803
HhaI GCGC 1 cut(s) 17
Hin1II CATG 1 cut(s) 483
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HindIII AAGCTT 1 cut(s) 898
HinfI GANTC 3 cut(s) 41, 125, 138
HpaII CCGG 2 cut(s) 609, 803
HphI GGTGA 2 cut(s) 699, 1185
Hpy166II GTNNAC 2 cut(s) 602, 1302
Hpy188I TCNGA 3 cut(s) 10, 89, 829
Hpy188III TCNNGA 2 cut(s) 695, 1110
Hpy8I GTNNAC 2 cut(s) 602, 1302
HpyCH4III ACNGT 2 cut(s) 153, 949
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 9 cut(s) 407, 506, 634, 646, 896, 953, 1105, 1144, 1259
HpyF10VI GCNNNNNNNGC 3 cut(s) 592, 643, 761
HpyF3I CTNAG 5 cut(s) 31, 863, 890, 1129, 1227
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 1 cut(s) 483
HspAI GCGC 1 cut(s) 15
KpnI GGTACC 1 cut(s) 809
Kzo9I GATC 5 cut(s) 23, 84, 304, 1093, 1112
LmnI GCTCC 2 cut(s) 54, 346
Lsp1109I GCAGC 4 cut(s) 646, 649, 709, 1160
MabI ACCWGGT 1 cut(s) 421
MaeI CTAG 3 cut(s) 372, 726, 741
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 2 cut(s) 1084, 1286
MalI GATC 5 cut(s) 25, 86, 306, 1095, 1114
MboI GATC 5 cut(s) 23, 84, 304, 1093, 1112
MboII GAAGA 5 cut(s) 134, 220, 258, 906, 1273
MfeI CAATTG 1 cut(s) 771
MflI RGATCY 1 cut(s) 1112
MhlI GDGCHC 2 cut(s) 32, 105
MlsI TGGCCA 1 cut(s) 923
MluCI AATT 6 cut(s) 430, 442, 469, 655, 771, 1048
MluNI TGGCCA 1 cut(s) 923
MlyI GAGTC 2 cut(s) 132, 134
MmeI TCCRAC 2 cut(s) 368, 1016
Mox20I TGGCCA 1 cut(s) 923
MscI TGGCCA 1 cut(s) 923
MseI TTAA 2 cut(s) 261, 393
MslI CAYNNNNRTG 2 cut(s) 1158, 1297
Msp20I TGGCCA 1 cut(s) 923
MspA1I CMGCKG 2 cut(s) 35, 677
MspI CCGG 2 cut(s) 609, 803
MspR9I CCNGG 4 cut(s) 201, 423, 462, 609
MunI CAATTG 1 cut(s) 771
MvaI CCWGG 3 cut(s) 201, 423, 462
MwoI GCNNNNNNNGC 3 cut(s) 592, 643, 761
NciI CCSGG 1 cut(s) 609
NdeII GATC 5 cut(s) 23, 84, 304, 1093, 1112
NlaIII CATG 1 cut(s) 483
NlaIV GGNNCC 4 cut(s) 807, 871, 1074, 1126
NmuCI GTSAC 1 cut(s) 1286
OliI CACNNNNGTG 1 cut(s) 1297
PaqCI CACCTGC 1 cut(s) 1264
PceI AGGCCT 1 cut(s) 519
PfeI GAWTC 1 cut(s) 41
Pfl23II CGTACG 2 cut(s) 148, 1054
PkrI GCNGC 7 cut(s) 37, 636, 639, 724, 1150, 1203, 1324
PleI GAGTC 2 cut(s) 132, 133
PpsI GAGTC 2 cut(s) 132, 133
PshBI ATTAAT 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 32
Psp6I CCWGG 3 cut(s) 199, 421, 460
PspEI GGTNACC 1 cut(s) 1084
PspFI CCCAGC 2 cut(s) 337, 1037
PspGI CCWGG 3 cut(s) 199, 421, 460
PspLI CGTACG 2 cut(s) 148, 1054
PspN4I GGNNCC 4 cut(s) 807, 871, 1074, 1126
PspPI GGNCC 8 cut(s) 185, 377, 554, 680, 701, 776, 989, 1124
PsuI RGATCY 1 cut(s) 1112
RsaI GTAC 7 cut(s) 47, 150, 536, 807, 946, 1056, 1303
RsaNI GTAC 7 cut(s) 46, 149, 535, 806, 945, 1055, 1302
RseI CAYNNNNRTG 2 cut(s) 1158, 1297
SacI GAGCTC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 261, 393
SatI GCNGC 7 cut(s) 36, 635, 638, 723, 1149, 1202, 1323
Sau3AI GATC 5 cut(s) 23, 84, 304, 1093, 1112
Sau96I GGNCC 8 cut(s) 185, 377, 554, 680, 701, 776, 989, 1124
ScaI AGTACT 1 cut(s) 946
SchI GAGTC 2 cut(s) 132, 134
ScrFI CCNGG 4 cut(s) 201, 423, 462, 609
SduI GDGCHC 2 cut(s) 32, 105
SexAI ACCWGGT 1 cut(s) 421
SfcI CTRYAG 3 cut(s) 879, 978, 1119
SinI GGWCC 3 cut(s) 680, 701, 989
SmiMI CAYNNNNRTG 2 cut(s) 1158, 1297
Sse9I AATT 6 cut(s) 430, 442, 469, 655, 771, 1048
SseBI AGGCCT 1 cut(s) 519
SspI AATATT 2 cut(s) 834, 1239
SspMI CTAG 3 cut(s) 372, 726, 741
SstI GAGCTC 1 cut(s) 32
StuI AGGCCT 1 cut(s) 519
StyD4I CCNGG 4 cut(s) 199, 421, 460, 607
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 2 cut(s) 153, 949
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 26, 353
TasI AATT 6 cut(s) 430, 442, 469, 655, 771, 1048
TatI WGTACW 3 cut(s) 534, 944, 1301
TauI GCSGC 3 cut(s) 38, 1204, 1325
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 2 cut(s) 261, 393
Tru9I TTAA 2 cut(s) 261, 393
TscAI CASTG 1 cut(s) 1074
TseFI GTSAC 1 cut(s) 1286
TseI GCWGC 4 cut(s) 634, 637, 722, 1148
Tsp45I GTSAC 1 cut(s) 1286
TspGWI ACGGA 3 cut(s) 221, 1042, 1076
TspRI CASTG 1 cut(s) 1074
VpaK11BI GGWCC 3 cut(s) 680, 701, 989
VspI ATTAAT 1 cut(s) 393
XapI RAATTY 2 cut(s) 430, 469
XspI CTAG 3 cut(s) 372, 726, 741
ZrmI AGTACT 1 cut(s) 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.