Rorug04G0291400

Decapping 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006026
Physical Location & Seq
Forward (+)
46547599 .. 46548277
679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0291400.1

Sequence Viewer

Length: 546 bp
ATGAGAGAAAATGGGTGTTTGCCCAACATTACGACATATAATGAGTTATTGGATGGTCTGTTCAAGGTGAACAGATTCGAAGAAGCATTTGGACTTGTCAGGGAGATAGATGAAAAGGGACTGAAACTGAATTTGGTAACATACAACACCATTTTGAATGGTTTTTGTCGCGCCGGGATGACCAACGAGGCTATGCAAGTTTTTAGCAACATGCTAACAAGGGGAACAAAGCCTGATGCCATTACATATAACATACTGATATATTTCTATTGCAAGCAAGGCAGGATAAAGACTGCTATTCAGCTTTTCAACAGTACTGGTGCAGCAAAGGAGTGGTGCCCGGATGTAATAGCTTACACTAGTCTTCTAAGTGGGATTTGTAACTCGGAAGGTCTAGACCATGCCAGGCCATGGTTCTTCGTGAAGGATAAGAACCATGATCTCCGATTTTCTTGTAAGGAATCGTCTGTTAATCACTTAATCCAACTTGTTGATGAAATGACAGATGCTAATCTTAACATAAGCGTCTGCCGTGACATCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010603 GO:0010605 GO:0010606 GO:0010608 GO:0010629 GO:0010638 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0031086 GO:0031087 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031334 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033962 GO:0034248 GO:0034249 GO:0034622 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902115 GO:1902117 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FDF LSM14

Protein Analysis

181

Amino Acids

20.58

Weight (kDa)

5.93

Isoelectric Point (pI)

22.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 1 - 97 5e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 4 - 35 6.2e-07 PPR repeat
PPR_2 PF13041 8 - 57 4.1e-15 PPR repeat family
PPR_3 PF13812 32 - 91 2.5e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 39 - 71 9.5e-14 PPR repeat
PPR_2 PF13041 44 - 87 4.1e-17 PPR repeat family
PPR PF01535 46 - 75 1.2e-08 PPR repeat
PPR_1 PF12854 75 - 104 1.2e-10 PPR repeat
PPR_2 PF13041 81 - 128 7.1e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 336
AccB7I CCANNNNNTGG 1 cut(s) 411
AccII CGCG 1 cut(s) 171
AcsI RAATTY 1 cut(s) 130
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 411
AgsI TTSAA 3 cut(s) 64, 157, 310
AhlI ACTAGT 1 cut(s) 359
AjnI CCWGG 1 cut(s) 404
AjuI GAANNNNNNNTTGG 4 cut(s) 72, 104, 116, 148
AloI GAACNNNNNNTCC 2 cut(s) 44, 76
AluBI AGCT 2 cut(s) 304, 353
AluI AGCT 2 cut(s) 304, 353
AoxI GGCC 1 cut(s) 407
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 130
Asp700I GAANNNNTTC 1 cut(s) 74
AspLEI GCGC 1 cut(s) 173
AsuC2I CCSGG 2 cut(s) 175, 341
AsuHPI GGTGA 1 cut(s) 79
AsuII TTCGAA 1 cut(s) 78
BaeGI GKGCMC 1 cut(s) 341
BanI GGYRCC 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 335
BccI CCATC 1 cut(s) 47
BceAI ACGGC 1 cut(s) 516
BciT130I CCWGG 1 cut(s) 406
BcnI CCSGG 2 cut(s) 175, 341
BcuI ACTAGT 1 cut(s) 359
BfaI CTAG 2 cut(s) 360, 395
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
BmcAI AGTACT 1 cut(s) 316
Bme1390I CCNGG 3 cut(s) 175, 341, 406
BmiI GGNNCC 1 cut(s) 338
BmrFI CCNGG 3 cut(s) 175, 341, 406
BmsI GCATC 2 cut(s) 226, 496
BpiI GAAGAC 1 cut(s) 356
Bpu14I TTCGAA 1 cut(s) 78
BpuMI CCSGG 2 cut(s) 175, 341
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 1 cut(s) 410
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse1I ACTGG 1 cut(s) 322
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 1 cut(s) 406
BseDI CCNNGG 1 cut(s) 410
BseGI GGATG 4 cut(s) 58, 183, 349, 537
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 1 cut(s) 411
BseNI ACTGG 1 cut(s) 322
BseSI GKGCMC 1 cut(s) 341
BseXI GCAGC 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 342
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 1 cut(s) 409
BshNI GGYRCC 1 cut(s) 336
BsiSI CCGG 2 cut(s) 174, 341
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 132
BsnI GGCC 1 cut(s) 409
Bsp119I TTCGAA 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 341
Bsp143I GATC 1 cut(s) 439
Bsp19I CCATGG 1 cut(s) 410
BspANI GGCC 1 cut(s) 409
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 338
BspT104I TTCGAA 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 336
BsrI ACTGG 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 410
BssMI GATC 1 cut(s) 439
BssT1I CCWWGG 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 406
Bst4CI ACNGT 1 cut(s) 314
BstBI TTCGAA 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 368
BstDSI CCRYGG 1 cut(s) 410
BstF5I GGATG 4 cut(s) 58, 183, 349, 537
BstFNI CGCG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 1 cut(s) 442
BstMBI GATC 1 cut(s) 439
BstMWI GCNNNNNNNGC 1 cut(s) 279
BstNI CCWGG 1 cut(s) 406
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 3 cut(s) 173, 339, 404
BstSLI GKGCMC 1 cut(s) 341
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 335
BstV2I GAAGAC 1 cut(s) 356
BsuRI GGCC 1 cut(s) 409
BtgI CCRYGG 1 cut(s) 410
BtsCI GGATG 4 cut(s) 58, 183, 349, 537
Cac8I GCNNGC 1 cut(s) 275
CfoI GCGC 1 cut(s) 173
CseI GACGC 1 cut(s) 514
Csp6I GTAC 1 cut(s) 315
CviAII CATG 4 cut(s) 211, 401, 411, 437
CviJI RGCY 5 cut(s) 191, 232, 304, 353, 409
CviKI_1 RGCY 5 cut(s) 191, 232, 304, 353, 409
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 1 cut(s) 368
DpnI GATC 1 cut(s) 441
DpnII GATC 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 404
EcoT14I CCWWGG 1 cut(s) 410
ErhI CCWWGG 1 cut(s) 410
FaeI CATG 4 cut(s) 214, 404, 414, 440
FaqI GGGAC 1 cut(s) 132
FatI CATG 4 cut(s) 210, 400, 410, 436
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 4 cut(s) 65, 190, 356, 524
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 2 cut(s) 360, 395
GlaI GCGC 1 cut(s) 172
GluI GCNGC 1 cut(s) 324
HaeIII GGCC 1 cut(s) 409
HapII CCGG 2 cut(s) 174, 341
HgaI GACGC 1 cut(s) 514
HhaI GCGC 1 cut(s) 173
Hin1II CATG 4 cut(s) 214, 404, 414, 440
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HinfI GANTC 2 cut(s) 75, 461
HpaII CCGG 2 cut(s) 174, 341
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 388, 446
Hpy188III TCNNGA 2 cut(s) 395, 421
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 2 cut(s) 383, 418
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4V TGCA 3 cut(s) 196, 273, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 279
HpyF3I CTNAG 1 cut(s) 368
Hsp92II CATG 4 cut(s) 214, 404, 414, 440
HspAI GCGC 1 cut(s) 171
Kzo9I GATC 1 cut(s) 439
LpnPI CCDG 8 cut(s) 85, 187, 246, 268, 303, 354, 391, 418
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 2 cut(s) 226, 496
MaeI CTAG 2 cut(s) 360, 395
MaeIII GTNAC 3 cut(s) 136, 380, 533
MalI GATC 1 cut(s) 441
MboI GATC 1 cut(s) 439
MboII GAAGA 3 cut(s) 92, 356, 409
MhlI GDGCHC 1 cut(s) 341
MluCI AATT 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 508
MnlI CCTC 1 cut(s) 181
MroXI GAANNNNTTC 1 cut(s) 74
MseI TTAA 3 cut(s) 471, 479, 516
MspI CCGG 2 cut(s) 174, 341
MspR9I CCNGG 3 cut(s) 175, 341, 406
MvaI CCWGG 1 cut(s) 406
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 279
NciI CCSGG 2 cut(s) 175, 341
NcoI CCATGG 1 cut(s) 410
NdeII GATC 1 cut(s) 439
NlaIII CATG 4 cut(s) 214, 404, 414, 440
NlaIV GGNNCC 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 533
NspI RCATGY 1 cut(s) 214
NspV TTCGAA 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 2 cut(s) 75, 461
PflMI CCANNNNNTGG 1 cut(s) 411
PkrI GCNGC 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 404
PspGI CCWGG 1 cut(s) 404
PspN4I GGNNCC 1 cut(s) 338
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SaqAI TTAA 3 cut(s) 471, 479, 516
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 1 cut(s) 439
ScaI AGTACT 1 cut(s) 316
ScrFI CCNGG 3 cut(s) 175, 341, 406
SduI GDGCHC 1 cut(s) 341
SetI ASST 4 cut(s) 69, 306, 355, 394
SfaNI GCATC 2 cut(s) 226, 496
SfuI TTCGAA 1 cut(s) 78
SpeI ACTAGT 1 cut(s) 359
Sse9I AATT 1 cut(s) 130
SspMI CTAG 2 cut(s) 360, 395
StyD4I CCNGG 3 cut(s) 173, 339, 404
StyI CCWWGG 1 cut(s) 410
TaaI ACNGT 1 cut(s) 314
TaqI TCGA 1 cut(s) 78
TasI AATT 1 cut(s) 130
TatI WGTACW 1 cut(s) 314
TfiI GAWTC 2 cut(s) 75, 461
Tru1I TTAA 3 cut(s) 471, 479, 516
Tru9I TTAA 3 cut(s) 471, 479, 516
TseFI GTSAC 1 cut(s) 533
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 533
TspDTI ATGAA 2 cut(s) 126, 510
Van91I CCANNNNNTGG 1 cut(s) 411
XapI RAATTY 1 cut(s) 130
XbaI TCTAGA 1 cut(s) 394
XceI RCATGY 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 2 cut(s) 360, 395
ZrmI AGTACT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.