Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0018933

Physical Location & Seq

Genomic Coordinates Forward (+)

4783939 .. 4786052

Gene Structure 2114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCCGTCTCATTCGGATCTGGACCGTCAGATCGAGCATCTGATGGAGTGCAAGACGTTGCCGGAGGCGGAGGTGAAGACGCTGTGCGAGCAGTCGAGATCGATCCTGGTGGAGGAGTGGAACGTGCAGCCGGTGAAGTGCCCCGTCACGGTGTGCGGAGATATACACGGCCAGTTCTACGACCTCATTGAGCTTTTTAAGATAGGAGGGAACGCTCCCGATACTAATTACCTTTTTATGGGTGATTATGTAGATCGTGGGTACTATTCTGTGGAGACTGTCACGCTTCTGGTCGCCCTGAAAGTCCGTTATAGAGATAGAATTACAATCCTCAGAGGAAATCACGAGAGCCGGCAAATTACTCAAGTGTATGGTTTTTATGACGAATGCTTGAGAAAGTATGGGAATGCCAATGTCTGGAAGTTCTTTACCGATTTATTTGATTATCTTCCCCTGACAGCCCTCATTGAGAGTCAGGTCTTCTGTTTGCATGGGGGTCTTTCACCATCTTTGGACACATTGGACAATATCCGAGCTTTGGACCGTATACAGGAGGTTCCACATGAAGGACCAATGTGTGATCGATCTTGTGGTCTGATCCAGATGACCGCTGTGGGTGGGGAATATCTCCGCGGGGTGCTGGTTATACATTCGGGCAGGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

222

Amino Acids

25.21

Weight (kDa)

5.23

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018933)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g07230
rosa_multiflora	Rmu_sc0003483.1_g000004 Rmu_sc0005173.1_g000016 Rmu_sc0009611.1_g000002 Rmu_sc0034387.1_g000001 Rmu_sc0042936.1_g000001
rosa_samantha	Rh2AG444800 Rh5DG252800 Rh5DG354700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	417
AccI	GTMKAC	1 cut(s)	547
AccII	CGCG	1 cut(s)	633
AciI	CCGC	5 cut(s)	68, 156, 609, 631, 633
AclWI	GGATC	3 cut(s)	24, 97, 592
AcoI	YGGCCR	1 cut(s)	169
AdeI	CACNNNGTG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	7 cut(s)	112, 148, 238, 417, 538, 550, 566
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	2 cut(s)	193, 536
AluI	AGCT	2 cut(s)	193, 536
Alw26I	GTCTC	2 cut(s)	12, 269
AlwI	GGATC	3 cut(s)	24, 97, 592
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	127
AspS9I	GGNCC	3 cut(s)	22, 541, 569
AsuHPI	GGTGA	4 cut(s)	85, 145, 254, 495
AvaII	GGWCC	3 cut(s)	22, 541, 569
BaeGI	GKGCMC	1 cut(s)	143
BauI	CACGAG	1 cut(s)	344
BbsI	GAAGAC	2 cut(s)	83, 472
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	2 cut(s)	37, 514
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	107
BcoDI	GTCTC	2 cut(s)	12, 269
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	3 cut(s)	22, 541, 569
BmgT120I	GGNCC	3 cut(s)	22, 541, 569
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	46
BpiI	GAAGAC	2 cut(s)	83, 472
BpuEI	CTTGAG	2 cut(s)	348, 412
Bsa29I	ATCGAT	2 cut(s)	101, 583
BsaJI	CCNNGG	1 cut(s)	631
Bsc4I	CCNNNNNNNGG	7 cut(s)	112, 148, 238, 417, 538, 550, 566
Bse118I	RCCGGY	2 cut(s)	130, 351
Bse1I	ACTGG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	107
BseCI	ATCGAT	2 cut(s)	101, 583
BseDI	CCNNGG	1 cut(s)	631
BseLI	CCNNNNNNNGG	7 cut(s)	112, 148, 238, 417, 538, 550, 566
BseMII	CTCAG	1 cut(s)	346
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	1 cut(s)	171
BshVI	ATCGAT	2 cut(s)	101, 583
BsiSI	CCGG	3 cut(s)	62, 131, 352
BslI	CCNNNNNNNGG	7 cut(s)	112, 148, 238, 417, 538, 550, 566
BsmAI	GTCTC	2 cut(s)	12, 269
BsmBI	CGTCTC	1 cut(s)	12
BsmI	GAATGC	2 cut(s)	392, 412
BsnI	GGCC	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	8 cut(s)	16, 30, 98, 102, 253, 580, 584, 597
BspACI	CCGC	5 cut(s)	68, 156, 609, 631, 633
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	345
BspDI	ATCGAT	2 cut(s)	101, 583
BspFNI	CGCG	1 cut(s)	633
BspLI	GGNNCC	1 cut(s)	558
BspPI	GGATC	3 cut(s)	24, 97, 592
BsrFI	RCCGGY	2 cut(s)	130, 351
BsrI	ACTGG	1 cut(s)	172
BssAI	RCCGGY	2 cut(s)	130, 351
BssECI	CCNNGG	1 cut(s)	631
BssMI	GATC	8 cut(s)	16, 30, 98, 102, 253, 580, 584, 597
BssNAI	GTATAC	1 cut(s)	548
BssSI	CACGAG	1 cut(s)	344
Bst1107I	GTATAC	1 cut(s)	548
Bst2BI	CACGAG	1 cut(s)	344
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	4 cut(s)	26, 151, 280, 545
BstC8I	GCNNGC	2 cut(s)	89, 353
BstDEI	CTNAG	1 cut(s)	332
BstDSI	CCRYGG	1 cut(s)	631
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstFNI	CGCG	1 cut(s)	633
BstKTI	GATC	8 cut(s)	19, 33, 101, 105, 256, 583, 587, 600
BstMAI	GTCTC	2 cut(s)	12, 269
BstMBI	GATC	8 cut(s)	16, 30, 98, 102, 253, 580, 584, 597
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	143
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	1 cut(s)	139
BstV2I	GAAGAC	2 cut(s)	83, 472
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BstZ17I	GTATAC	1 cut(s)	548
Bsu15I	ATCGAT	2 cut(s)	101, 583
BsuRI	GGCC	1 cut(s)	171
BsuTUI	ATCGAT	2 cut(s)	101, 583
BtgI	CCRYGG	1 cut(s)	631
Cac8I	GCNNGC	2 cut(s)	89, 353
Cfr10I	RCCGGY	2 cut(s)	130, 351
Cfr13I	GGNCC	3 cut(s)	22, 541, 569
Cfr42I	CCGCGG	1 cut(s)	634
ClaI	ATCGAT	2 cut(s)	101, 583
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	2 cut(s)	491, 563
CviJI	RGCY	6 cut(s)	130, 171, 193, 351, 461, 536
CviKI_1	RGCY	6 cut(s)	130, 171, 193, 351, 461, 536
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	8 cut(s)	18, 32, 100, 104, 255, 582, 586, 599
DpnII	GATC	8 cut(s)	16, 30, 98, 102, 253, 580, 584, 597
DraIII	CACNNNGTG	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	83
Eco47I	GGWCC	3 cut(s)	22, 541, 569
EcoNI	CCTNNNNNAGG	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	2 cut(s)	494, 566
FatI	CATG	2 cut(s)	490, 562
FauI	CCCGC	1 cut(s)	626
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	3 cut(s)	62, 131, 352
HgaI	GACGC	1 cut(s)	88
Hin1II	CATG	2 cut(s)	494, 566
HinfI	GANTC	1 cut(s)	472
HpaII	CCGG	3 cut(s)	62, 131, 352
HphI	GGTGA	4 cut(s)	85, 145, 254, 495
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	6 cut(s)	16, 30, 42, 335, 533, 597
Hpy188III	TCNNGA	6 cut(s)	20, 96, 218, 344, 418, 601
Hpy8I	GTNNAC	1 cut(s)	548
HpyAV	CCTTC	1 cut(s)	560
HpyCH4III	ACNGT	4 cut(s)	26, 151, 280, 545
HpyCH4IV	ACGT	2 cut(s)	56, 123
HpyCH4V	TGCA	3 cut(s)	51, 127, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	1 cut(s)	332
HpySE526I	ACGT	2 cut(s)	56, 123
Hsp92II	CATG	2 cut(s)	494, 566
KroI	GCCGGC	1 cut(s)	351
KroNI	GCCGGC	1 cut(s)	353
KspI	CCGCGG	1 cut(s)	634
Kzo9I	GATC	8 cut(s)	16, 30, 98, 102, 253, 580, 584, 597
LmnI	GCTCC	1 cut(s)	220
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	1 cut(s)	46
MaeII	ACGT	2 cut(s)	56, 123
MaeIII	GTNAC	2 cut(s)	145, 280
MalI	GATC	8 cut(s)	18, 32, 100, 104, 255, 582, 586, 599
MboI	GATC	8 cut(s)	16, 30, 98, 102, 253, 580, 584, 597
MboII	GAAGA	3 cut(s)	88, 440, 472
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	3 cut(s)	226, 321, 357
MlyI	GAGTC	1 cut(s)	481
MnlI	CCTC	9 cut(s)	58, 64, 106, 194, 200, 329, 341, 473, 547
MroNI	GCCGGC	1 cut(s)	351
MseI	TTAA	1 cut(s)	198
MspA1I	CMGCKG	2 cut(s)	611, 633
MspI	CCGG	3 cut(s)	62, 131, 352
MspR9I	CCNGG	1 cut(s)	107
Mva1269I	GAATGC	2 cut(s)	392, 412
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	1 cut(s)	88
NaeI	GCCGGC	1 cut(s)	353
NdeII	GATC	8 cut(s)	16, 30, 98, 102, 253, 580, 584, 597
NgoMIV	GCCGGC	1 cut(s)	351
NlaIII	CATG	2 cut(s)	494, 566
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	2 cut(s)	145, 280
PctI	GAATGC	2 cut(s)	392, 412
PdiI	GCCGGC	1 cut(s)	353
PflMI	CCANNNNNTGG	1 cut(s)	417
PkrI	GCNGC	1 cut(s)	129
PleI	GAGTC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	3 cut(s)	22, 541, 569
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SacII	CCGCGG	1 cut(s)	634
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	8 cut(s)	16, 30, 98, 102, 253, 580, 584, 597
Sau96I	GGNCC	3 cut(s)	22, 541, 569
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	9 cut(s)	59, 75, 126, 186, 195, 234, 480, 538, 558
SfaNI	GCATC	1 cut(s)	46
Sfr303I	CCGCGG	1 cut(s)	634
SgrBI	CCGCGG	1 cut(s)	634
SinI	GGWCC	3 cut(s)	22, 541, 569
SmlI	CTYRAG	2 cut(s)	363, 391
SmoI	CTYRAG	2 cut(s)	363, 391
Sse9I	AATT	3 cut(s)	226, 321, 357
SsiI	CCGC	5 cut(s)	68, 156, 609, 631, 633
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	4 cut(s)	26, 151, 280, 545
TaiI	ACGT	2 cut(s)	59, 126
TaqI	TCGA	4 cut(s)	33, 95, 101, 583
TasI	AATT	3 cut(s)	226, 321, 357
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseFI	GTSAC	2 cut(s)	145, 280
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	2 cut(s)	145, 280
TspDTI	ATGAA	1 cut(s)	579
TspGWI	ACGGA	1 cut(s)	296
Van91I	CCANNNNNTGG	1 cut(s)	417
VpaK11BI	GGWCC	3 cut(s)	22, 541, 569
XagI	CCTNNNNNAGG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.