Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034387.1

Orthogroup ID

OG0018933

Physical Location & Seq

Genomic Coordinates Forward (+)

3613 .. 4611

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034387.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atgccggcgaaagctgatctggaccgtcagatcaaccacctaatgcagtgcaagcttctgacggagacgatgtgcgagcaagcgaggacgatcctcgcccgggagtggaatgtgcagattgtcaagcgtccggtcaccgtctgcggcgacatccacgaccaacgccggaatccggtcaccagtccggcaaccggattccggtcatcggtcgccggagtcggcgcccagccactggtcaccggagcacagcaaggtggaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

87

Amino Acids

9.43

Weight (kDa)

9.1

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018933)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g07230
rosa_multiflora	Rmu_sc0003483.1_g000004 Rmu_sc0005173.1_g000016 Rmu_sc0009611.1_g000002 Rmu_sc0034387.1_g000001 Rmu_sc0042936.1_g000001
rosa_samantha	Rh2AG444800 Rh5DG252800 Rh5DG354700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AccB7I	CCANNNNNTGG	1 cut(s)	232
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	222
AfiI	CCNNNNNNNGG	7 cut(s)	100, 105, 172, 191, 198, 205, 232
AluBI	AGCT	2 cut(s)	14, 55
AluI	AGCT	2 cut(s)	14, 55
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	85
AlwNI	CAGNNNCTG	1 cut(s)	232
Ama87I	CYCGRG	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	22
AsuC2I	CCSGG	2 cut(s)	100, 101
AsuHPI	GGTGA	3 cut(s)	127, 169, 229
AvaI	CYCGRG	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	247
BcnI	CCSGG	2 cut(s)	100, 101
BcoDI	GTCTC	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
Bme1390I	CCNGG	2 cut(s)	100, 101
Bme18I	GGWCC	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	2 cut(s)	100, 101
BpuMI	CCSGG	2 cut(s)	100, 101
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	5 cut(s)	130, 172, 191, 198, 239
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	7 cut(s)	100, 105, 172, 191, 198, 205, 232
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	2 cut(s)	180, 237
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	7 cut(s)	100, 105, 172, 191, 198, 205, 232
BseNI	ACTGG	2 cut(s)	180, 237
BseYI	CCCAGC	1 cut(s)	225
BsgI	GTGCAG	1 cut(s)	134
Bsh1285I	CGRYCG	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	99
BslI	CCNNNNNNNGG	7 cut(s)	100, 105, 172, 191, 198, 205, 232
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	3 cut(s)	16, 30, 90
BspACI	CCGC	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	221
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	180, 237
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	16, 30, 90
BssNI	GRCGYC	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	26, 139
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	4 cut(s)	6, 53, 77, 81
BstEII	GGTNACC	3 cut(s)	133, 175, 235
BstF5I	GGATG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	3 cut(s)	19, 33, 93
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	3 cut(s)	16, 30, 90
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstPI	GGTNACC	3 cut(s)	133, 175, 235
BstSCI	CCNGG	2 cut(s)	98, 99
BtsCI	GGATG	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	53, 230
Cac8I	GCNNGC	4 cut(s)	6, 53, 77, 81
CaiI	CAGNNNCTG	1 cut(s)	232
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	22
Cfr9I	CCCGGG	1 cut(s)	99
CseI	GACGC	1 cut(s)	116
CviJI	RGCY	3 cut(s)	14, 55, 229
CviKI_1	RGCY	3 cut(s)	14, 55, 229
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	3 cut(s)	18, 32, 92
DpnII	GATC	3 cut(s)	16, 30, 90
Eco47I	GGWCC	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	99
Eco91I	GGTNACC	3 cut(s)	133, 175, 235
EcoO65I	GGTNACC	3 cut(s)	133, 175, 235
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	59
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	145
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	145
GsaI	CCCAGC	1 cut(s)	229
HaeII	RGCGCY	1 cut(s)	225
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	222
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	3 cut(s)	169, 195, 216
HphI	GGTGA	3 cut(s)	127, 169, 229
Hpy188I	TCNGA	2 cut(s)	30, 60
Hpy188III	TCNNGA	1 cut(s)	20
HpyCH4III	ACNGT	2 cut(s)	26, 139
HpyCH4V	TGCA	3 cut(s)	46, 51, 115
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
Hsp92I	GRCGYC	1 cut(s)	222
HspAI	GCGC	1 cut(s)	222
KasI	GGCGCC	1 cut(s)	221
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	16, 30, 90
LmnI	GCTCC	1 cut(s)	242
MaeIII	GTNAC	3 cut(s)	133, 175, 235
MalI	GATC	3 cut(s)	18, 32, 92
MboI	GATC	3 cut(s)	16, 30, 90
MhlI	GDGCHC	1 cut(s)	247
Mly113I	GGCGCC	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	225
MnlI	CCTC	3 cut(s)	78, 104, 251
MroNI	GCCGGC	1 cut(s)	4
MspR9I	CCNGG	2 cut(s)	100, 101
MwoI	GCNNNNNNNGC	1 cut(s)	52
NaeI	GCCGGC	1 cut(s)	6
NarI	GGCGCC	1 cut(s)	222
NciI	CCSGG	2 cut(s)	100, 101
NdeII	GATC	3 cut(s)	16, 30, 90
NgoMIV	GCCGGC	1 cut(s)	4
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	3 cut(s)	133, 175, 235
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	169, 195
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	224
PluTI	GGCGCC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	224
PspEI	GGTNACC	3 cut(s)	133, 175, 235
PspFI	CCCAGC	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	232
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	3 cut(s)	16, 30, 90
Sau96I	GGNCC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	225
ScrFI	CCNGG	2 cut(s)	100, 101
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	4 cut(s)	16, 42, 57, 256
SfoI	GGCGCC	1 cut(s)	223
SinI	GGWCC	1 cut(s)	22
SmaI	CCCGGG	1 cut(s)	101
SsiI	CCGC	1 cut(s)	144
SspDI	GGCGCC	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	98, 99
TaaI	ACNGT	2 cut(s)	26, 139
TaqII	GACCGA	1 cut(s)	196
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	169, 195
TscAI	CASTG	2 cut(s)	53, 237
TseFI	GTSAC	3 cut(s)	133, 175, 235
Tsp45I	GTSAC	3 cut(s)	133, 175, 235
TspGWI	ACGGA	1 cut(s)	77
TspMI	CCCGGG	1 cut(s)	99
TspRI	CASTG	2 cut(s)	53, 237
Van91I	CCANNNNNTGG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	22
XmaI	CCCGGG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.