Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0018933

Physical Location & Seq

Genomic Coordinates Reverse (-)

65737128 .. 65739290

Gene Structure 2163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG444800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGCCGTCTCACGGGGATCTGGACCGTCAGATCGAGCATCTAATGGAGTGCAAGACGTTGCCGAAGGAGGAGGTGAAGACGCTGTGCGAGCAAGAGGTTCAGTCAAAGGGCCCTAGACTCGTCGGAGATGCCGGACCGTCACCGGCGTTCTGGCGAAGGCGGCAGGGCGACGCTGGGCAGGTTCTGTTTGGGGTGACTGCGGTGGAGCTGGGCCAAGCTCGGCTGAGGTCTCATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

79

Amino Acids

8.84

Weight (kDa)

6.82

Isoelectric Point (pI)

80.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018933)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g07230
rosa_multiflora	Rmu_sc0003483.1_g000004 Rmu_sc0005173.1_g000016 Rmu_sc0009611.1_g000002 Rmu_sc0034387.1_g000001 Rmu_sc0042936.1_g000001
rosa_samantha	Rh2AG444800 Rh5DG252800 Rh5DG354700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	169
AciI	CCGC	2 cut(s)	160, 200
AclWI	GGATC	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	11
AluBI	AGCT	2 cut(s)	208, 218
AluI	AGCT	2 cut(s)	208, 218
Alw26I	GTCTC	2 cut(s)	12, 234
AlwI	GGATC	1 cut(s)	24
AlwNI	CAGNNNCTG	1 cut(s)	184
AoxI	GGCC	2 cut(s)	109, 211
ApaI	GGGCCC	1 cut(s)	113
AspS9I	GGNCC	5 cut(s)	22, 109, 110, 134, 211
AsuHPI	GGTGA	3 cut(s)	85, 132, 205
AvaII	GGWCC	2 cut(s)	22, 134
BaeGI	GKGCMC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	83
BbvCI	CCTCAGC	1 cut(s)	224
BcoDI	GTCTC	2 cut(s)	12, 234
BfaI	CTAG	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	169
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme18I	GGWCC	2 cut(s)	22, 134
BmgT120I	GGNCC	5 cut(s)	22, 109, 110, 134, 211
BmiI	GGNNCC	1 cut(s)	111
BmsI	GCATC	2 cut(s)	46, 118
BpiI	GAAGAC	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse118I	RCCGGY	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	113
BseYI	CCCAGC	2 cut(s)	173, 208
BshFI	GGCC	2 cut(s)	111, 213
BsiSI	CCGG	2 cut(s)	132, 143
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	2 cut(s)	12, 234
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	111, 213
Bso31I	GGTCTC	1 cut(s)	234
Bsp120I	GGGCCC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	16, 30
BspACI	CCGC	2 cut(s)	160, 200
BspANI	GGCC	2 cut(s)	111, 213
BspCNI	CTCAG	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	24
BspTNI	GGTCTC	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	142
BssMI	GATC	2 cut(s)	16, 30
Bst4CI	ACNGT	2 cut(s)	26, 138
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	224
BstKTI	GATC	2 cut(s)	19, 33
BstMAI	GTCTC	2 cut(s)	12, 234
BstMBI	GATC	2 cut(s)	16, 30
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 160
BstSLI	GKGCMC	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	111, 213
BveI	ACCTGC	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	5 cut(s)	22, 109, 110, 134, 211
CpoI	CGGWCCG	1 cut(s)	134
CseI	GACGC	2 cut(s)	88, 179
CspI	CGGWCCG	1 cut(s)	134
CviJI	RGCY	5 cut(s)	111, 208, 213, 218, 223
CviKI_1	RGCY	5 cut(s)	111, 208, 213, 218, 223
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	2 cut(s)	18, 32
DpnII	GATC	2 cut(s)	16, 30
Eco24I	GRGCYC	1 cut(s)	113
Eco31I	GGTCTC	1 cut(s)	234
Eco47I	GGWCC	2 cut(s)	22, 134
EcoO109I	RGGNCCY	2 cut(s)	109, 110
EcoT38I	GRGCYC	1 cut(s)	113
Esp3I	CGTCTC	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	1 cut(s)	161
GsaI	CCCAGC	2 cut(s)	177, 212
HaeIII	GGCC	2 cut(s)	111, 213
HapII	CCGG	2 cut(s)	132, 143
HgaI	GACGC	2 cut(s)	88, 179
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	2 cut(s)	132, 143
HphI	GGTGA	3 cut(s)	85, 132, 205
Hpy188I	TCNGA	2 cut(s)	30, 125
Hpy188III	TCNNGA	1 cut(s)	20
Hpy99I	CGWCG	2 cut(s)	125, 173
HpyAV	CCTTC	2 cut(s)	58, 150
HpyCH4III	ACNGT	2 cut(s)	26, 138
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 160
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	16, 30
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	8 cut(s)	5, 136, 145, 149, 156, 159, 164, 194
LweI	GCATC	2 cut(s)	46, 118
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	138, 193
MalI	GATC	2 cut(s)	18, 32
MboI	GATC	2 cut(s)	16, 30
MboII	GAAGA	1 cut(s)	88
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	113
MlyI	GAGTC	1 cut(s)	111
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	4 cut(s)	61, 64, 88, 219
MseI	TTAA	1 cut(s)	238
MspI	CCGG	2 cut(s)	132, 143
MwoI	GCNNNNNNNGC	2 cut(s)	88, 160
NdeII	GATC	2 cut(s)	16, 30
NlaIV	GGNNCC	1 cut(s)	111
NmeAIII	GCCGAG	1 cut(s)	199
NmuCI	GTSAC	2 cut(s)	138, 193
PkrI	GCNGC	1 cut(s)	162
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
PspFI	CCCAGC	2 cut(s)	173, 208
PspN4I	GGNNCC	1 cut(s)	111
PspOMI	GGGCCC	1 cut(s)	109
PspPI	GGNCC	5 cut(s)	22, 109, 110, 134, 211
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	16
Rsr2I	CGGWCCG	1 cut(s)	134
RsrII	CGGWCCG	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	238
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	2 cut(s)	16, 30
Sau96I	GGNCC	5 cut(s)	22, 109, 110, 134, 211
SchI	GAGTC	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	113
SetI	ASST	7 cut(s)	59, 75, 99, 183, 210, 220, 230
SfaNI	GCATC	2 cut(s)	46, 118
SgrAI	CRCCGGYG	1 cut(s)	142
SinI	GGWCC	2 cut(s)	22, 134
SsiI	CCGC	2 cut(s)	160, 200
SspMI	CTAG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	26, 138
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	33
TauI	GCSGC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	238
Tru9I	TTAA	1 cut(s)	238
TseFI	GTSAC	2 cut(s)	138, 193
Tsp45I	GTSAC	2 cut(s)	138, 193
VpaK11BI	GGWCC	2 cut(s)	22, 134
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.