Rh5DG354700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018933
Physical Location & Seq
Forward (+)
52213247 .. 52213447
201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG354700.1

Sequence Viewer

Length: 201 bp
ATGATCGCGTTTCTGCAAGGCTTGGCTCCGATCTGGATTGACAGGGGCCCTAGACGCGTCGGAGATGCCGGACCGTCACCGGCGTTCTGGCGAAGGCAGCCGGGCGACACTGGGCAGGTCCTGATTGGGGTCACTGCGGTGGAGATGGGCCAGGCCCGGCTGGCAGGTGGTGGGCCTCCCTCTCCTCAGATTGTTGCTTGG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.05

Weight (kDa)

11.3

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 155
Acc36I ACCTGC 2 cut(s) 106, 155
AccII CGCG 2 cut(s) 8, 57
AciI CCGC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 127
AflIII ACRYGT 1 cut(s) 55
AjnI CCWGG 1 cut(s) 150
AleI CACNNNNGTG 1 cut(s) 137
AlwNI CAGNNNCTG 1 cut(s) 121
AoxI GGCC 4 cut(s) 46, 148, 153, 173
ApaI GGGCCC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 97
AspS9I GGNCC 7 cut(s) 46, 47, 71, 118, 148, 154, 173
AsuC2I CCSGG 2 cut(s) 102, 157
AsuHPI GGTGA 1 cut(s) 69
AvaII GGWCC 2 cut(s) 71, 118
BaeGI GKGCMC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 109
BccI CCATC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 152
BcnI CCSGG 2 cut(s) 102, 157
BfaI CTAG 1 cut(s) 51
BfuAI ACCTGC 2 cut(s) 106, 155
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 3 cut(s) 102, 152, 157
Bme18I GGWCC 2 cut(s) 71, 118
BmgT120I GGNCC 7 cut(s) 46, 47, 71, 118, 148, 154, 173
BmiI GGNNCC 3 cut(s) 27, 47, 48
BmrFI CCNGG 3 cut(s) 102, 152, 157
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 1 cut(s) 55
BmuI ACTGGG 1 cut(s) 120
BpuMI CCSGG 2 cut(s) 102, 157
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 115
BseBI CCWGG 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 174
BseSI GKGCMC 1 cut(s) 50
BseXI GCAGC 1 cut(s) 109
Bsh1236I CGCG 2 cut(s) 8, 57
BshFI GGCC 4 cut(s) 48, 150, 155, 175
BsiSI CCGG 4 cut(s) 69, 80, 101, 157
BslI CCNNNNNNNGG 1 cut(s) 127
BsnI GGCC 4 cut(s) 48, 150, 155, 175
Bsp120I GGGCCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 3, 30
BspACI CCGC 1 cut(s) 137
BspANI GGCC 4 cut(s) 48, 150, 155, 175
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 2 cut(s) 8, 57
BspLI GGNNCC 3 cut(s) 27, 47, 48
BspMI ACCTGC 2 cut(s) 106, 155
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 1 cut(s) 115
BssAI RCCGGY 1 cut(s) 79
BssMI GATC 2 cut(s) 3, 30
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 186
BstFNI CGCG 2 cut(s) 8, 57
BstKTI GATC 2 cut(s) 6, 33
BstMBI GATC 2 cut(s) 3, 30
BstMWI GCNNNNNNNGC 3 cut(s) 54, 97, 161
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 3 cut(s) 100, 150, 155
BstSLI GKGCMC 1 cut(s) 50
BstUI CGCG 2 cut(s) 8, 57
BstV1I GCAGC 1 cut(s) 109
BsuRI GGCC 4 cut(s) 48, 150, 155, 175
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 108, 132
BveI ACCTGC 2 cut(s) 106, 155
Cac8I GCNNGC 1 cut(s) 162
CaiI CAGNNNCTG 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 7 cut(s) 46, 47, 71, 118, 148, 154, 173
CpoI CGGWCCG 1 cut(s) 71
CseI GACGC 2 cut(s) 46, 63
CspI CGGWCCG 1 cut(s) 71
CviJI RGCY 8 cut(s) 21, 26, 48, 100, 150, 155, 160, 175
CviKI_1 RGCY 8 cut(s) 21, 26, 48, 100, 150, 155, 160, 175
DdeI CTNAG 1 cut(s) 186
DpnI GATC 2 cut(s) 5, 32
DpnII GATC 2 cut(s) 3, 30
Eco24I GRGCYC 1 cut(s) 50
Eco47I GGWCC 2 cut(s) 71, 118
EcoO109I RGGNCCY 3 cut(s) 46, 47, 118
EcoRII CCWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 98
FspBI CTAG 1 cut(s) 51
GluI GCNGC 1 cut(s) 98
HaeIII GGCC 4 cut(s) 48, 150, 155, 175
HapII CCGG 4 cut(s) 69, 80, 101, 157
HgaI GACGC 2 cut(s) 46, 63
HpaII CCGG 4 cut(s) 69, 80, 101, 157
HphI GGTGA 1 cut(s) 69
Hpy188I TCNGA 3 cut(s) 30, 62, 189
Hpy188III TCNNGA 2 cut(s) 34, 121
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 87
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 97, 161
HpyF3I CTNAG 1 cut(s) 186
Kzo9I GATC 2 cut(s) 3, 30
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 75, 130
MalI GATC 2 cut(s) 5, 32
MboI GATC 2 cut(s) 3, 30
MhlI GDGCHC 1 cut(s) 50
MluI ACGCGT 1 cut(s) 55
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 3 cut(s) 186, 190, 195
MslI CAYNNNNRTG 1 cut(s) 137
MspI CCGG 4 cut(s) 69, 80, 101, 157
MspR9I CCNGG 3 cut(s) 102, 152, 157
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 2 cut(s) 8, 57
MwoI GCNNNNNNNGC 3 cut(s) 54, 97, 161
NciI CCSGG 2 cut(s) 102, 157
NdeII GATC 2 cut(s) 3, 30
NlaIV GGNNCC 3 cut(s) 27, 47, 48
NmuCI GTSAC 2 cut(s) 75, 130
OliI CACNNNNGTG 1 cut(s) 137
PaqCI CACCTGC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 99
PpuMI RGGWCCY 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 3 cut(s) 27, 47, 48
PspOMI GGGCCC 1 cut(s) 46
PspPI GGNCC 7 cut(s) 46, 47, 71, 118, 148, 154, 173
PspPPI RGGWCCY 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 137
Rsr2I CGGWCCG 1 cut(s) 71
RsrII CGGWCCG 1 cut(s) 71
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 2 cut(s) 3, 30
Sau96I GGNCC 7 cut(s) 46, 47, 71, 118, 148, 154, 173
ScrFI CCNGG 3 cut(s) 102, 152, 157
SduI GDGCHC 1 cut(s) 50
SetI ASST 2 cut(s) 120, 169
SfaNI GCATC 1 cut(s) 55
SgrAI CRCCGGYG 1 cut(s) 79
SinI GGWCC 2 cut(s) 71, 118
SmiMI CAYNNNNRTG 1 cut(s) 137
SsiI CCGC 1 cut(s) 137
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 3 cut(s) 100, 150, 155
TaaI ACNGT 1 cut(s) 75
TscAI CASTG 2 cut(s) 115, 139
TseFI GTSAC 2 cut(s) 75, 130
TseI GCWGC 1 cut(s) 97
Tsp45I GTSAC 2 cut(s) 75, 130
TspRI CASTG 2 cut(s) 115, 139
VpaK11BI GGWCC 2 cut(s) 71, 118
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.