Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005173.1

Orthogroup ID

OG0018933

Physical Location & Seq

Genomic Coordinates Forward (+)

68958 .. 69885

Gene Structure 928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005173.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ctgaggctccgcctctgcaaaaagcgacgctccgtcgccttagaggccgcttttccagcagcacgttcaagtttgagccggcgaggctttttccggtcgcctcacactgaagcgcgcccctggctcgcctcggcgacgcctttgaaaacactggtggtgacacatgcatgtaaaggtcgaccgtatttgacaaaattgccctcattcctctcattctctctctcactcgactcccctcagcctctcacctcccagactctctctctctctctctctcccctcagcctctcatctcccctcgtctcctcccacctccccaacacaagtcaacctagaacctccactccactccatttccggcgagtccagctctcaccgcaccaccaatcgagagctaaaatctccaccacgatgccgccgaaagctgatctggaccgtcagatcgaccacctgatgcagtgcaagcctctgacggaggcggaggtgaagacgctgtgtgagcaagcgaggacgatcctcgcccaggagtggaatgtgcaaattgtcaagtgtccggtcaccgtctgcggcgacatccaccgccagtttcatgaccttcttttctctctcccgatctgctctttctctcgcaccgtgcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

213

Amino Acids

23.89

Weight (kDa)

10.54

Isoelectric Point (pI)

64.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018933)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g07230
rosa_multiflora	Rmu_sc0003483.1_g000004 Rmu_sc0005173.1_g000016 Rmu_sc0009611.1_g000002 Rmu_sc0034387.1_g000001 Rmu_sc0042936.1_g000001
rosa_samantha	Rh2AG444800 Rh5DG252800 Rh5DG354700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	178
AccII	CGCG	1 cut(s)	115
AciI	CCGC	7 cut(s)	10, 48, 377, 416, 479, 567, 580
AclWI	GGATC	1 cut(s)	508
AcuI	CTGAAG	1 cut(s)	129
AcyI	GRCGYC	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	523, 528
AgsI	TTSAA	2 cut(s)	69, 145
AhdI	GACNNNNNGTC	1 cut(s)	32
AjnI	CCWGG	2 cut(s)	119, 522
AloI	GAACNNNNNNTCC	2 cut(s)	328, 360
AluBI	AGCT	3 cut(s)	370, 395, 425
AluI	AGCT	3 cut(s)	370, 395, 425
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	1 cut(s)	508
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	59
AspLEI	GCGC	3 cut(s)	115, 117, 639
AspS9I	GGNCC	1 cut(s)	433
AsuHPI	GGTGA	5 cut(s)	169, 238, 366, 496, 550
AvaII	GGWCC	1 cut(s)	433
BbsI	GAAGAC	1 cut(s)	494
BbvCI	CCTCAGC	2 cut(s)	237, 281
BbvI	GCAGC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	121, 524
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	1 cut(s)	333
BglI	GCCNNNNNGGC	2 cut(s)	44, 84
BisI	GCNGC	4 cut(s)	48, 60, 416, 568
BlsI	GCNGC	4 cut(s)	49, 61, 417, 569
Bme1390I	CCNGG	2 cut(s)	121, 524
Bme18I	GGWCC	1 cut(s)	433
BmeRI	GACNNNNNGTC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	1 cut(s)	8
BmrFI	CCNGG	2 cut(s)	121, 524
BmsI	GCATC	2 cut(s)	402, 444
BpiI	GAAGAC	1 cut(s)	494
BplI	GAGNNNNNCTC	2 cut(s)	354, 386
Bpu10I	CCTNAGC	2 cut(s)	237, 281
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	119, 129, 522
BsaWI	WCCGGW	2 cut(s)	93, 553
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	2 cut(s)	523, 528
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	156, 583
BseBI	CCWGG	2 cut(s)	121, 524
BseDI	CCNNGG	3 cut(s)	119, 129, 522
BseGI	GGATG	1 cut(s)	573
BseLI	CCNNNNNNNGG	2 cut(s)	523, 528
BseMII	CTCAG	2 cut(s)	251, 295
BseNI	ACTGG	2 cut(s)	156, 583
BsePI	GCGCGC	1 cut(s)	113
BseRI	GAGGAG	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	115
Bsh1285I	CGRYCG	2 cut(s)	98, 182
BshFI	GGCC	1 cut(s)	47
BsiEI	CGRYCG	2 cut(s)	98, 182
BsiSI	CCGG	4 cut(s)	79, 94, 358, 554
BslI	CCNNNNNNNGG	2 cut(s)	523, 528
BsmAI	GTCTC	1 cut(s)	307
BsmBI	CGTCTC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	47
Bsp143I	GATC	4 cut(s)	427, 441, 513, 612
BspACI	CCGC	7 cut(s)	10, 48, 377, 416, 479, 567, 580
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	2 cut(s)	250, 294
BspFNI	CGCG	1 cut(s)	115
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	508
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	156, 583
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	3 cut(s)	119, 129, 522
BssHII	GCGCGC	1 cut(s)	113
BssMI	GATC	4 cut(s)	427, 441, 513, 612
BssNI	GRCGYC	1 cut(s)	137
Bst2UI	CCWGG	2 cut(s)	121, 524
Bst4CI	ACNGT	4 cut(s)	183, 437, 562, 634
BstACI	GRCGYC	1 cut(s)	137
BstC8I	GCNNGC	5 cut(s)	80, 115, 126, 464, 504
BstDEI	CTNAG	4 cut(s)	2, 40, 237, 281
BstEII	GGTNACC	1 cut(s)	556
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstF5I	GGATG	1 cut(s)	573
BstFNI	CGCG	1 cut(s)	115
BstHHI	GCGC	3 cut(s)	115, 117, 639
BstKTI	GATC	4 cut(s)	430, 444, 516, 615
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	4 cut(s)	427, 441, 513, 612
BstMCI	CGRYCG	2 cut(s)	98, 182
BstMWI	GCNNNNNNNGC	9 cut(s)	44, 56, 84, 121, 367, 376, 463, 499, 636
BstNI	CCWGG	2 cut(s)	121, 524
BstNSI	RCATGY	2 cut(s)	167, 171
BstPI	GGTNACC	1 cut(s)	556
BstSCI	CCNGG	2 cut(s)	119, 522
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	494
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	573
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	3 cut(s)	105, 149, 464
Cac8I	GCNNGC	5 cut(s)	80, 115, 126, 464, 504
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	3 cut(s)	115, 117, 639
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	433
CseI	GACGC	3 cut(s)	36, 145, 499
CviAII	CATG	3 cut(s)	164, 168, 590
DdeI	CTNAG	4 cut(s)	2, 40, 237, 281
DpnI	GATC	4 cut(s)	429, 443, 515, 614
DpnII	GATC	4 cut(s)	427, 441, 513, 612
DriI	GACNNNNNGTC	1 cut(s)	32
Eam1105I	GACNNNNNGTC	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	129
Eco91I	GGTNACC	1 cut(s)	556
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoO65I	GGTNACC	1 cut(s)	556
EcoRII	CCWGG	2 cut(s)	119, 522
EcoT22I	ATGCAT	1 cut(s)	169
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	3 cut(s)	167, 171, 593
FaiI	YATR	3 cut(s)	165, 169, 591
FatI	CATG	3 cut(s)	163, 167, 589
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	4 cut(s)	48, 60, 416, 568
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	4 cut(s)	48, 60, 416, 568
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	3 cut(s)	114, 116, 638
GluI	GCNGC	4 cut(s)	48, 60, 416, 568
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	4 cut(s)	79, 94, 358, 554
HgaI	GACGC	3 cut(s)	36, 145, 499
HhaI	GCGC	3 cut(s)	115, 117, 639
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	3 cut(s)	167, 171, 593
Hin6I	GCGC	3 cut(s)	113, 115, 637
HinP1I	GCGC	3 cut(s)	113, 115, 637
HincII	GTYRAC	2 cut(s)	179, 329
HindII	GTYRAC	2 cut(s)	179, 329
HinfI	GANTC	3 cut(s)	230, 256, 363
HpaII	CCGG	4 cut(s)	79, 94, 358, 554
HphI	GGTGA	5 cut(s)	169, 238, 366, 496, 550
Hpy166II	GTNNAC	2 cut(s)	179, 329
Hpy188I	TCNGA	2 cut(s)	441, 471
Hpy188III	TCNNGA	4 cut(s)	390, 431, 590, 610
Hpy8I	GTNNAC	2 cut(s)	179, 329
Hpy99I	CGWCG	3 cut(s)	30, 38, 139
HpyAV	CCTTC	1 cut(s)	605
HpyCH4III	ACNGT	4 cut(s)	183, 437, 562, 634
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	5 cut(s)	18, 167, 457, 462, 538
HpyF10VI	GCNNNNNNNGC	9 cut(s)	44, 56, 84, 121, 367, 376, 463, 499, 636
HpyF3I	CTNAG	4 cut(s)	2, 40, 237, 281
HpySE526I	ACGT	1 cut(s)	64
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	3 cut(s)	167, 171, 593
HspAI	GCGC	3 cut(s)	113, 115, 637
KroI	GCCGGC	1 cut(s)	78
KroNI	GCCGGC	1 cut(s)	80
Kzo9I	GATC	4 cut(s)	427, 441, 513, 612
LmnI	GCTCC	2 cut(s)	12, 35
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	2 cut(s)	402, 444
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	2 cut(s)	157, 556
MalI	GATC	4 cut(s)	429, 443, 515, 614
MboI	GATC	4 cut(s)	427, 441, 513, 612
MboII	GAAGA	1 cut(s)	499
MluCI	AATT	2 cut(s)	194, 540
MlyI	GAGTC	3 cut(s)	224, 250, 372
Mph1103I	ATGCAT	1 cut(s)	169
MroNI	GCCGGC	1 cut(s)	78
MslI	CAYNNNNRTG	2 cut(s)	166, 410
MspI	CCGG	4 cut(s)	79, 94, 358, 554
MspR9I	CCNGG	2 cut(s)	121, 524
MvaI	CCWGG	2 cut(s)	121, 524
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	9 cut(s)	44, 56, 84, 121, 367, 376, 463, 499, 636
NaeI	GCCGGC	1 cut(s)	80
NdeII	GATC	4 cut(s)	427, 441, 513, 612
NgoMIV	GCCGGC	1 cut(s)	78
NlaIII	CATG	3 cut(s)	167, 171, 593
NlaIV	GGNNCC	1 cut(s)	8
NmeAIII	GCCGAG	1 cut(s)	110
NmuCI	GTSAC	2 cut(s)	157, 556
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	2 cut(s)	167, 171
PagI	TCATGA	1 cut(s)	589
PauI	GCGCGC	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PdiI	GCCGGC	1 cut(s)	80
PkrI	GCNGC	4 cut(s)	49, 61, 417, 569
PleI	GAGTC	3 cut(s)	224, 250, 371
PpsI	GAGTC	3 cut(s)	224, 250, 371
Psp6I	CCWGG	2 cut(s)	119, 522
PspEI	GGTNACC	1 cut(s)	556
PspGI	CCWGG	2 cut(s)	119, 522
PspN4I	GGNNCC	1 cut(s)	8
PspPI	GGNCC	1 cut(s)	433
PteI	GCGCGC	1 cut(s)	113
RseI	CAYNNNNRTG	2 cut(s)	166, 410
SalI	GTCGAC	1 cut(s)	177
SatI	GCNGC	4 cut(s)	48, 60, 416, 568
Sau3AI	GATC	4 cut(s)	427, 441, 513, 612
Sau96I	GGNCC	1 cut(s)	433
SchI	GAGTC	3 cut(s)	224, 250, 372
ScrFI	CCNGG	2 cut(s)	121, 524
SfaNI	GCATC	2 cut(s)	402, 444
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	2 cut(s)	166, 410
Sse9I	AATT	2 cut(s)	194, 540
SsiI	CCGC	7 cut(s)	10, 48, 377, 416, 479, 567, 580
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	119, 522
TaaI	ACNGT	4 cut(s)	183, 437, 562, 634
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	4 cut(s)	178, 228, 389, 444
TasI	AATT	2 cut(s)	194, 540
TauI	GCSGC	3 cut(s)	50, 418, 570
TscAI	CASTG	3 cut(s)	112, 156, 464
TseFI	GTSAC	2 cut(s)	157, 556
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	2 cut(s)	157, 556
TspDTI	ATGAA	1 cut(s)	578
TspGWI	ACGGA	2 cut(s)	22, 488
TspRI	CASTG	3 cut(s)	112, 156, 464
VpaK11BI	GGWCC	1 cut(s)	433
XagI	CCTNNNNNAGG	1 cut(s)	521
XceI	RCATGY	2 cut(s)	167, 171
XmiI	GTMKAC	1 cut(s)	178
XspI	CTAG	1 cut(s)	333
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.