Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009611.1

Orthogroup ID

OG0018933

Physical Location & Seq

Genomic Coordinates Reverse (-)

3494 .. 9067

Gene Structure 5574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009611.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgccgccgaaagtcgatctggaccgtcagatcgaccacctaatgcagtgcaagcctctgacggaggcggaggtgaagacgctgtgtgagcaagcgaggacgatcctcgcccaggagtggaatgtgcagattgtcaagtgtccagtcaccgtctgcggcgacatccacggccagatttcggttaccggttcccggaatccggtcattggtctccggaatccggtcgccggagaccgcgccgaccactggtcaccggagcacagcaaggtggaagtcctgccccatagtaaggagcttaaatccagagctgaggagaagatcaattcatgttcactgtcaagtccgtttagtgctactgcaatggctcccaacacagaagaaggggttgacgttattgaggcttcaatcttcagtattatgttctgggaagagggcgtgcggcacctcaagcgctatcgcttggagagtctcaattcaattcttccctggagcaaggcttcgtcagggatatcaatctttgttaaatctgactgggttgattttgattccaatcacagagcgggatcaggactggtggtcagagttgcgataccgagttggaggggtgagactcgagttgcaactgacagttgcgataccgagttgcagaagtgggagatggggatggggcgaggtgccgctgaggaaggaatcccttctactgaggccttcttgaacgattgttcattctttggtcacaagttcctccaatttccgggaccaaagccattgctgggttggtcggacaagtggtgccgggaggtgctgccggcgagagaagctaaaacacagattttcgctctcttccatatctctttcaattgtacgcaagttgtgaggcttcctgatgtgatctattggaggagagaagggctcttgatggtgttgtgctggagatggaagaacggagaaggttgggtgcccatattacatcttggcctcgcaggagtactgagacaagctagtgtactggtggctgtggtccacccgataccaccagtgtatggtatcggtatcgacatcgtgtctgggcgttatcaacatcaatcgttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

364

Amino Acids

40.78

Weight (kDa)

6.64

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018933)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g07230
rosa_multiflora	Rmu_sc0003483.1_g000004 Rmu_sc0005173.1_g000016 Rmu_sc0009611.1_g000002 Rmu_sc0034387.1_g000001 Rmu_sc0042936.1_g000001
rosa_samantha	Rh2AG444800 Rh5DG252800 Rh5DG354700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	441, 674, 792, 958
AccB7I	CCANNNNNTGG	1 cut(s)	1043
AccBSI	CCGCTC	1 cut(s)	560
AccII	CGCG	1 cut(s)	237
AccIII	TCCGGA	1 cut(s)	213
AciI	CCGC	7 cut(s)	5, 68, 156, 235, 439, 560, 678
AclWI	GGATC	2 cut(s)	97, 571
AcoI	YGGCCR	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	394
AfaI	GTAC	3 cut(s)	865, 990, 1008
AfeI	AGCGCT	1 cut(s)	452
AgeI	ACCGGT	1 cut(s)	185
AgsI	TTSAA	4 cut(s)	405, 477, 715, 859
AhdI	GACNNNNNGTC	3 cut(s)	247, 575, 1063
AjnI	CCWGG	2 cut(s)	111, 485
AluBI	AGCT	4 cut(s)	295, 308, 821, 1001
AluI	AGCT	4 cut(s)	295, 308, 821, 1001
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	5 cut(s)	215, 225, 473, 602, 988
AlwI	GGATC	2 cut(s)	97, 571
Ama87I	CYCGRG	1 cut(s)	612
Aor13HI	TCCGGA	1 cut(s)	213
Aor51HI	AGCGCT	1 cut(s)	452
AoxI	GGCC	3 cut(s)	169, 705, 976
ApeKI	GCWGC	1 cut(s)	805
AsiGI	ACCGGT	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	694
AspLEI	GCGC	2 cut(s)	239, 453
AspS9I	GGNCC	3 cut(s)	22, 758, 1021
AsuC2I	CCSGG	3 cut(s)	193, 756, 797
AsuHPI	GGTGA	4 cut(s)	85, 139, 243, 617
AvaI	CYCGRG	1 cut(s)	612
AvaII	GGWCC	3 cut(s)	22, 758, 1021
BaeGI	GKGCMC	1 cut(s)	963
BanI	GGYRCC	4 cut(s)	441, 674, 792, 958
BanII	GRGCYC	1 cut(s)	915
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	261
BbvCI	CCTCAGC	2 cut(s)	309, 681
BbvI	GCAGC	1 cut(s)	792
BccI	CCATC	4 cut(s)	652, 658, 913, 930
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	2 cut(s)	113, 487
BcnI	CCSGG	3 cut(s)	193, 756, 797
BcoDI	GTCTC	5 cut(s)	215, 225, 473, 602, 988
BfaI	CTAG	1 cut(s)	1002
BfoI	RGCGCY	1 cut(s)	454
BisI	GCNGC	5 cut(s)	5, 157, 440, 678, 806
BlsI	GCNGC	5 cut(s)	6, 158, 441, 679, 807
BmcAI	AGTACT	1 cut(s)	990
Bme1390I	CCNGG	5 cut(s)	113, 193, 487, 756, 797
Bme18I	GGWCC	3 cut(s)	22, 758, 1021
BmeRI	GACNNNNNGTC	3 cut(s)	247, 575, 1063
BmeT110I	CYCGRG	1 cut(s)	612
BmgT120I	GGNCC	3 cut(s)	22, 758, 1021
BmiI	GGNNCC	7 cut(s)	190, 366, 443, 676, 759, 794, 960
BmrFI	CCNGG	5 cut(s)	113, 193, 487, 756, 797
BmrI	ACTGGG	1 cut(s)	541
BmuI	ACTGGG	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	83
BplI	GAGNNNNNCTC	2 cut(s)	897, 929
BpmI	CTGGAG	2 cut(s)	508, 952
Bpu10I	CCTNAGC	2 cut(s)	309, 681
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	3 cut(s)	193, 756, 797
BsaBI	GATNNNNATC	2 cut(s)	512, 549
BsaI	GGTCTC	2 cut(s)	215, 225
BsaJI	CCNNGG	3 cut(s)	111, 166, 485
BsaWI	WCCGGW	5 cut(s)	185, 199, 213, 220, 253
Bse118I	RCCGGY	2 cut(s)	185, 808
Bse1I	ACTGG	6 cut(s)	143, 251, 536, 576, 1014, 1037
Bse3DI	GCAATG	2 cut(s)	366, 767
Bse8I	GATNNNNATC	2 cut(s)	512, 549
BseAI	TCCGGA	1 cut(s)	213
BseBI	CCWGG	2 cut(s)	113, 487
BseDI	CCNNGG	3 cut(s)	111, 166, 485
BseGI	GGATG	2 cut(s)	162, 669
BseJI	GATNNNNATC	2 cut(s)	512, 549
BseMI	GCAATG	2 cut(s)	366, 767
BseMII	CTCAG	4 cut(s)	300, 672, 693, 983
BseNI	ACTGG	6 cut(s)	143, 251, 536, 576, 1014, 1037
BseRI	GAGGAG	2 cut(s)	326, 916
BseSI	GKGCMC	1 cut(s)	963
BseXI	GCAGC	1 cut(s)	792
BseYI	CCCAGC	1 cut(s)	772
BsgI	GTGCAG	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	225
BshFI	GGCC	3 cut(s)	171, 707, 978
BshNI	GGYRCC	4 cut(s)	441, 674, 792, 958
BshTI	ACCGGT	1 cut(s)	185
BsiEI	CGRYCG	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	612
BslFI	GGGAC	1 cut(s)	771
BsmAI	GTCTC	5 cut(s)	215, 225, 473, 602, 988
BsmFI	GGGAC	1 cut(s)	771
BsnI	GGCC	3 cut(s)	171, 707, 978
Bso31I	GGTCTC	2 cut(s)	215, 225
BsoBI	CYCGRG	1 cut(s)	612
Bsp1286I	GDGCHC	3 cut(s)	261, 915, 963
Bsp13I	TCCGGA	1 cut(s)	213
Bsp143I	GATC	6 cut(s)	16, 30, 102, 318, 563, 891
BspACI	CCGC	7 cut(s)	5, 68, 156, 235, 439, 560, 678
BspANI	GGCC	3 cut(s)	171, 707, 978
BspCNI	CTCAG	4 cut(s)	301, 673, 694, 984
BspEI	TCCGGA	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	7 cut(s)	190, 366, 443, 676, 759, 794, 960
BspPI	GGATC	2 cut(s)	97, 571
BspT107I	GGYRCC	4 cut(s)	441, 674, 792, 958
BspTNI	GGTCTC	2 cut(s)	215, 225
BsrBI	CCGCTC	1 cut(s)	560
BsrDI	GCAATG	2 cut(s)	366, 767
BsrFI	RCCGGY	2 cut(s)	185, 808
BsrI	ACTGG	6 cut(s)	143, 251, 536, 576, 1014, 1037
BssAI	RCCGGY	2 cut(s)	185, 808
BssECI	CCNNGG	3 cut(s)	111, 166, 485
BssMI	GATC	6 cut(s)	16, 30, 102, 318, 563, 891
Bst2UI	CCWGG	2 cut(s)	113, 487
Bst4CI	ACNGT	4 cut(s)	26, 151, 336, 629
Bst6I	CTCTTC	2 cut(s)	423, 848
BstC8I	GCNNGC	4 cut(s)	53, 93, 437, 810
BstDEI	CTNAG	4 cut(s)	309, 681, 702, 992
BstDSI	CCRYGG	1 cut(s)	166
BstEII	GGTNACC	2 cut(s)	181, 249
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstF5I	GGATG	2 cut(s)	162, 669
BstFNI	CGCG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	454
BstHHI	GCGC	2 cut(s)	239, 453
BstKTI	GATC	6 cut(s)	19, 33, 105, 321, 566, 894
BstMAI	GTCTC	5 cut(s)	215, 225, 473, 602, 988
BstMBI	GATC	6 cut(s)	16, 30, 102, 318, 563, 891
BstMCI	CGRYCG	1 cut(s)	225
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 88, 448, 818
BstNI	CCWGG	2 cut(s)	113, 487
BstPI	GGTNACC	2 cut(s)	181, 249
BstSCI	CCNGG	5 cut(s)	111, 191, 485, 754, 795
BstSLI	GKGCMC	1 cut(s)	963
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	792
BstV2I	GAAGAC	1 cut(s)	83
BsuRI	GGCC	3 cut(s)	171, 707, 978
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	162, 669
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	4 cut(s)	53, 244, 332, 1044
Cac8I	GCNNGC	4 cut(s)	53, 93, 437, 810
CfoI	GCGC	2 cut(s)	239, 453
Cfr10I	RCCGGY	2 cut(s)	185, 808
Cfr13I	GGNCC	3 cut(s)	22, 758, 1021
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	3 cut(s)	864, 989, 1007
CspAI	ACCGGT	1 cut(s)	185
CviAII	CATG	1 cut(s)	327
CviQI	GTAC	3 cut(s)	864, 989, 1007
DdeI	CTNAG	4 cut(s)	309, 681, 702, 992
DpnI	GATC	6 cut(s)	18, 32, 104, 320, 565, 893
DpnII	GATC	6 cut(s)	16, 30, 102, 318, 563, 891
DriI	GACNNNNNGTC	3 cut(s)	247, 575, 1063
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	2 cut(s)	423, 848
Eam1105I	GACNNNNNGTC	3 cut(s)	247, 575, 1063
EarI	CTCTTC	2 cut(s)	423, 848
EciI	GGCGGA	1 cut(s)	83
Eco147I	AGGCCT	1 cut(s)	707
Eco24I	GRGCYC	1 cut(s)	915
Eco31I	GGTCTC	2 cut(s)	215, 225
Eco32I	GATATC	1 cut(s)	510
Eco47I	GGWCC	3 cut(s)	22, 758, 1021
Eco47III	AGCGCT	1 cut(s)	452
Eco57I	CTGAAG	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	612
Eco91I	GGTNACC	2 cut(s)	181, 249
EcoNI	CCTNNNNNAGG	1 cut(s)	110
EcoO65I	GGTNACC	2 cut(s)	181, 249
EcoRII	CCWGG	2 cut(s)	111, 485
EcoRV	GATATC	1 cut(s)	510
EcoT38I	GRGCYC	1 cut(s)	915
FaeI	CATG	1 cut(s)	330
FaiI	YATR	6 cut(s)	285, 328, 419, 849, 965, 1044
FaqI	GGGAC	1 cut(s)	771
FatI	CATG	1 cut(s)	326
FauI	CCCGC	1 cut(s)	553
Fnu4HI	GCNGC	5 cut(s)	5, 157, 440, 678, 806
FokI	GGATG	2 cut(s)	149, 676
FriOI	GRGCYC	1 cut(s)	915
Fsp4HI	GCNGC	5 cut(s)	5, 157, 440, 678, 806
FspBI	CTAG	1 cut(s)	1002
GlaI	GCGC	2 cut(s)	238, 452
GluI	GCNGC	5 cut(s)	5, 157, 440, 678, 806
GsaI	CCCAGC	1 cut(s)	776
GsuI	CTGGAG	2 cut(s)	508, 952
HaeII	RGCGCY	1 cut(s)	454
HaeIII	GGCC	3 cut(s)	171, 707, 978
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	2 cut(s)	239, 453
Hin1II	CATG	1 cut(s)	330
Hin6I	GCGC	2 cut(s)	237, 451
HinP1I	GCGC	2 cut(s)	237, 451
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	6 cut(s)	196, 217, 466, 545, 610, 690
HphI	GGTGA	4 cut(s)	85, 139, 243, 617
Hpy166II	GTNNAC	4 cut(s)	332, 388, 1007, 1024
Hpy188I	TCNGA	5 cut(s)	30, 60, 529, 581, 784
Hpy188III	TCNNGA	7 cut(s)	20, 214, 303, 567, 712, 884, 916
Hpy8I	GTNNAC	4 cut(s)	332, 388, 1007, 1024
HpyAV	CCTTC	6 cut(s)	374, 680, 705, 718, 902, 944
HpyCH4III	ACNGT	4 cut(s)	26, 151, 336, 629
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	6 cut(s)	46, 51, 127, 359, 620, 646
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 88, 448, 818
HpyF3I	CTNAG	4 cut(s)	309, 681, 702, 992
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	1 cut(s)	330
HspAI	GCGC	2 cut(s)	237, 451
Kpn2I	TCCGGA	1 cut(s)	213
KroI	GCCGGC	1 cut(s)	808
KroNI	GCCGGC	1 cut(s)	810
Kzo9I	GATC	6 cut(s)	16, 30, 102, 318, 563, 891
LmnI	GCTCC	4 cut(s)	256, 292, 370, 489
Lsp1109I	GCAGC	1 cut(s)	792
MaeI	CTAG	1 cut(s)	1002
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	4 cut(s)	145, 181, 249, 734
MalI	GATC	6 cut(s)	18, 32, 104, 320, 565, 893
MbiI	CCGCTC	1 cut(s)	560
MboI	GATC	6 cut(s)	16, 30, 102, 318, 563, 891
MboII	GAAGA	8 cut(s)	88, 328, 389, 400, 440, 473, 835, 952
MfeI	CAATTG	1 cut(s)	859
MhlI	GDGCHC	3 cut(s)	261, 915, 963
MluCI	AATT	5 cut(s)	322, 472, 477, 749, 859
MlyI	GAGTC	2 cut(s)	475, 604
MmeI	TCCRAC	2 cut(s)	578, 762
MroI	TCCGGA	1 cut(s)	213
MroNI	GCCGGC	1 cut(s)	808
MroXI	GAANNNNTTC	1 cut(s)	694
MseI	TTAA	3 cut(s)	297, 522, 1093
MspA1I	CMGCKG	1 cut(s)	680
MspR9I	CCNGG	5 cut(s)	113, 193, 487, 756, 797
MunI	CAATTG	1 cut(s)	859
MvaI	CCWGG	2 cut(s)	113, 487
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	4 cut(s)	52, 88, 448, 818
NaeI	GCCGGC	1 cut(s)	810
NciI	CCSGG	3 cut(s)	193, 756, 797
NdeII	GATC	6 cut(s)	16, 30, 102, 318, 563, 891
NgoMIV	GCCGGC	1 cut(s)	808
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	7 cut(s)	190, 366, 443, 676, 759, 794, 960
NmuCI	GTSAC	3 cut(s)	145, 249, 734
PaeR7I	CTCGAG	1 cut(s)	612
PceI	AGGCCT	1 cut(s)	707
PdiI	GCCGGC	1 cut(s)	810
PdmI	GAANNNNTTC	1 cut(s)	694
PfeI	GAWTC	4 cut(s)	196, 217, 545, 690
PflMI	CCANNNNNTGG	1 cut(s)	1043
PfoI	TCCNGGA	2 cut(s)	191, 754
PinAI	ACCGGT	1 cut(s)	185
PkrI	GCNGC	5 cut(s)	6, 158, 441, 679, 807
PleI	GAGTC	2 cut(s)	474, 604
PpsI	GAGTC	2 cut(s)	474, 604
Psp6I	CCWGG	2 cut(s)	111, 485
PspEI	GGTNACC	2 cut(s)	181, 249
PspFI	CCCAGC	1 cut(s)	772
PspGI	CCWGG	2 cut(s)	111, 485
PspN4I	GGNNCC	7 cut(s)	190, 366, 443, 676, 759, 794, 960
PspPI	GGNCC	3 cut(s)	22, 758, 1021
PspXI	VCTCGAGB	1 cut(s)	612
RsaI	GTAC	3 cut(s)	865, 990, 1008
RsaNI	GTAC	3 cut(s)	864, 989, 1007
SaqAI	TTAA	3 cut(s)	297, 522, 1093
SatI	GCNGC	5 cut(s)	5, 157, 440, 678, 806
Sau3AI	GATC	6 cut(s)	16, 30, 102, 318, 563, 891
Sau96I	GGNCC	3 cut(s)	22, 758, 1021
ScaI	AGTACT	1 cut(s)	990
SchI	GAGTC	2 cut(s)	475, 604
ScrFI	CCNGG	5 cut(s)	113, 193, 487, 756, 797
SduI	GDGCHC	3 cut(s)	261, 915, 963
Sfr274I	CTCGAG	1 cut(s)	612
SinI	GGWCC	3 cut(s)	22, 758, 1021
SlaI	CTCGAG	1 cut(s)	612
SmlI	CTYRAG	2 cut(s)	446, 612
SmoI	CTYRAG	2 cut(s)	446, 612
Sse9I	AATT	5 cut(s)	322, 472, 477, 749, 859
SseBI	AGGCCT	1 cut(s)	707
SsiI	CCGC	7 cut(s)	5, 68, 156, 235, 439, 560, 678
SspMI	CTAG	1 cut(s)	1002
StuI	AGGCCT	1 cut(s)	707
StyD4I	CCNGG	5 cut(s)	111, 191, 485, 754, 795
TaaI	ACNGT	4 cut(s)	26, 151, 336, 629
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	4 cut(s)	15, 33, 613, 1056
TasI	AATT	5 cut(s)	322, 472, 477, 749, 859
TatI	WGTACW	2 cut(s)	988, 1006
TauI	GCSGC	4 cut(s)	7, 159, 442, 680
TfiI	GAWTC	4 cut(s)	196, 217, 545, 690
Tru1I	TTAA	3 cut(s)	297, 522, 1093
Tru9I	TTAA	3 cut(s)	297, 522, 1093
TscAI	CASTG	4 cut(s)	53, 251, 339, 1044
TseFI	GTSAC	3 cut(s)	145, 249, 734
TseI	GCWGC	1 cut(s)	805
Tsp45I	GTSAC	3 cut(s)	145, 249, 734
TspDTI	ATGAA	2 cut(s)	315, 714
TspGWI	ACGGA	3 cut(s)	77, 333, 960
TspRI	CASTG	4 cut(s)	53, 251, 339, 1044
Van91I	CCANNNNNTGG	1 cut(s)	1043
VpaK11BI	GGWCC	3 cut(s)	22, 758, 1021
XagI	CCTNNNNNAGG	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	774
XhoI	CTCGAG	1 cut(s)	612
XmnI	GAANNNNTTC	1 cut(s)	694
XspI	CTAG	1 cut(s)	1002
ZrmI	AGTACT	1 cut(s)	990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.