Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004423

Physical Location & Seq

Genomic Coordinates Reverse (-)

5139071 .. 5142814

Gene Structure 3744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAATGACATACTTGCCCAGGTGGCAACAAAAACCGAGTCAAACAAGAATGCAGGAAATGCAATCCTATATGAATGTGTTGAAACTATCATGAGCATTGAAGATAGTGGTGGCTTACGTGTGCTTGCCATCAATATCTTGGGAAGATTCTTATCAAATCGTGACAACAATATCAGATATGTTGCATTAAACATGCTGATGAAGGCTATTACAGTTGACGCACAAGCTGTGCAGAGGCATCGGGCAACTATCTTGGAATGTGTAAAGGATTCAGATGCCTCAATTCGGAAAAGAGCCCTTGAGCTTGTTTATGTGCTTGTGAATGAGAGCAATGTGAAACCTCTAACAAAAGAGCTTATTGACTATTTGGAAGTCAGTGATGAAGAATTCAAGGGAGATCTTACTGCGAAAATTTGCTCCATTGTTACAAAGTTTTCCCCTGAGAAGATTTGGTACATTGACCAGATGCTCAAGGTTCTCTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTATGGCACGCACTTATTGTTGTGATTAGCAATGCTTCTGATCTCCATGGATATACAGTTAGGGCATTATACCGAGCATTCCAATTATCAGCTGAACAGGAAAGTCTTGTTCGAGTAGCAATTTGGTGCATTGGAGAATACGGTGACATGTTGGTTAACAATGTTGGCATGCTCGATATAGAGGACCCAATAATAGTTACAGAGTCTGATGCTGTGGATGTCATAGAAGTTGCAATCAAGCATCATACCTCGGATCTAACTACCAAATCAATGGGTTTGATTGCTCTGTTGAAACTATCTTCACGTTTCCCATCTTGTTCAGAGAGGATCAAGGAAATAGTTGTTCAATACAAAGGAAGCCTTGTCCTTGAATTGCAGCAAAGATCCATTGAATTGAACTCTATTATTGCAAAGCATCAGAACATTAGATCTACACTTGTTGAAAGGATGCCAGTTTTGGATGAGGCAACTTTCATCGGAAAGAAGGCTGGTTCAATGCAATCTACTGTTTCTTCTCCTGTTGGTGCTTCAATCAATCTACCAAATGGAGTTGCCAAACCTTCTGCAGCTCCTCTTGTGGATCTACTTGATCTAGTTTCAGATGATGTGCCAGCACCTAGCTCCTCTGGTGGTGATTTGCTTCATCGATCTTCTTGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0008150 GO:0012505 GO:0012506 GO:0012510 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030119 GO:0030120 GO:0030121 GO:0030125 GO:0030130 GO:0030131 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N Alpha_adaptinC2

Protein Analysis

391

Amino Acids

42.92

Weight (kDa)

5.24

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	1 - 309	3.7e-76	Adaptin N terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23900 AT1G23900 AT1G23900 AT1G60070 AT1G60070
fragaria_vesca	FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830
malus_domestica	MD13G1089300.v1.1 MD16G1089500.v1.1
prunus_persica	Prupe.1G256500_v2.0.a1
pyrus_communis	pycom13g07770 pycom16g07660
rosa_chinensis	RchiOBHm_Chr4g0444171
rosa_laevigata	RLG00000005850
rosa_multiflora	Rmu_sc0034408.1_g000001 Rmu_ssc0000462.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384760
rosa_rugosa	Rorug04G0350700 Rorug04G0350700
rosa_samantha	Rh4AG411400 Rh4BG422800 Rh4CG154500 Rh4CG437100 Rh4DG418100
rosa_wichuraiana	Rw4G035340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	771, 845, 888, 1098
AcsI	RAATTY	3 cut(s)	386, 411, 493
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	285
AflIII	ACRYGT	2 cut(s)	118, 657
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	6 cut(s)	227, 304, 355, 602, 1079, 1131
AluI	AGCT	6 cut(s)	227, 304, 355, 602, 1079, 1131
AlwI	GGATC	4 cut(s)	771, 845, 888, 1098
AlwNI	CAGNNNCTG	1 cut(s)	716
ApeKI	GCWGC	2 cut(s)	886, 1076
ApoI	RAATTY	3 cut(s)	386, 411, 493
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspS9I	GGNCC	1 cut(s)	694
AsuHPI	GGTGA	2 cut(s)	665, 1154
AvaII	GGWCC	1 cut(s)	694
BanII	GRGCYC	1 cut(s)	298
BarI	GAAGNNNNNNTAC	2 cut(s)	437, 469
BbvI	GCAGC	2 cut(s)	898, 1088
BccI	CCATC	2 cut(s)	137, 829
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	1 cut(s)	20
BfaI	CTAG	2 cut(s)	1103, 1128
BfmI	CTRYAG	1 cut(s)	1074
BglI	GCCNNNNNGGC	1 cut(s)	23
BglII	AGATCT	2 cut(s)	397, 938
BisI	GCNGC	2 cut(s)	887, 1077
BlsI	GCNGC	2 cut(s)	888, 1078
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	694
BmgT120I	GGNCC	1 cut(s)	694
BmiI	GGNNCC	1 cut(s)	696
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	7 cut(s)	247, 265, 456, 709, 760, 934, 948
BpuEI	CTTGAG	2 cut(s)	320, 455
Bsa29I	ATCGAT	1 cut(s)	1156
BsaAI	YACGTR	1 cut(s)	119
BsaBI	GATNNNNATC	1 cut(s)	151
BsaJI	CCNNGG	3 cut(s)	18, 556, 759
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse1I	ACTGG	1 cut(s)	962
Bse3DI	GCAATG	2 cut(s)	337, 547
Bse8I	GATNNNNATC	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	20
BseCI	ATCGAT	1 cut(s)	1156
BseDI	CCNNGG	3 cut(s)	18, 556, 759
BseGI	GGATG	3 cut(s)	733, 963, 976
BseJI	GATNNNNATC	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMI	GCAATG	2 cut(s)	337, 547
BseMII	CTCAG	2 cut(s)	432, 474
BseNI	ACTGG	1 cut(s)	962
BseRI	GAGGAG	2 cut(s)	1071, 1123
BseXI	GCAGC	2 cut(s)	898, 1088
BsgI	GTGCAG	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	1156
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmI	GAATGC	2 cut(s)	55, 587
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	9 cut(s)	397, 550, 763, 837, 893, 938, 1090, 1099, 1157
Bsp19I	CCATGG	1 cut(s)	556
BspCNI	CTCAG	2 cut(s)	433, 475
BspDI	ATCGAT	1 cut(s)	1156
BspHI	TCATGA	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	696
BspMAI	CTGCAG	1 cut(s)	1078
BspPI	GGATC	4 cut(s)	771, 845, 888, 1098
BsrDI	GCAATG	2 cut(s)	337, 547
BsrI	ACTGG	1 cut(s)	962
BssECI	CCNNGG	3 cut(s)	18, 556, 759
BssMI	GATC	9 cut(s)	397, 550, 763, 837, 893, 938, 1090, 1099, 1157
BssT1I	CCWWGG	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	4 cut(s)	214, 568, 653, 1018
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	119
BstC8I	GCNNGC	4 cut(s)	126, 519, 680, 1122
BstDEI	CTNAG	2 cut(s)	441, 483
BstDSI	CCRYGG	1 cut(s)	556
BstF5I	GGATG	3 cut(s)	733, 963, 976
BstKTI	GATC	9 cut(s)	400, 553, 766, 840, 896, 941, 1093, 1102, 1160
BstMBI	GATC	9 cut(s)	397, 550, 763, 837, 893, 938, 1090, 1099, 1157
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 59
BstNI	CCWGG	1 cut(s)	20
BstNSI	RCATGY	3 cut(s)	196, 661, 682
BstSCI	CCNGG	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	1074
BstV1I	GCAGC	2 cut(s)	898, 1088
BstX2I	RGATCY	5 cut(s)	397, 763, 893, 938, 1090
BstXI	CCANNNNNNTGG	1 cut(s)	781
BstYI	RGATCY	5 cut(s)	397, 763, 893, 938, 1090
Bsu15I	ATCGAT	1 cut(s)	1156
BsuTUI	ATCGAT	1 cut(s)	1156
BtgI	CCRYGG	1 cut(s)	556
BtsCI	GGATG	3 cut(s)	733, 963, 976
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	4 cut(s)	126, 519, 680, 1122
CaiI	CAGNNNCTG	1 cut(s)	716
CciI	TCATGA	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	694
ClaI	ATCGAT	1 cut(s)	1156
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	5 cut(s)	91, 193, 557, 658, 679
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	2 cut(s)	441, 483
DpnI	GATC	9 cut(s)	399, 552, 765, 839, 895, 940, 1092, 1101, 1159
DpnII	GATC	9 cut(s)	397, 550, 763, 837, 893, 938, 1090, 1099, 1157
Eco130I	CCWWGG	1 cut(s)	556
Eco24I	GRGCYC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	694
EcoO109I	RGGNCCY	1 cut(s)	694
EcoRI	GAATTC	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	5 cut(s)	94, 196, 560, 661, 682
FalI	AAGNNNNNCTT	2 cut(s)	855, 887
FatI	CATG	5 cut(s)	90, 192, 556, 657, 678
Fnu4HI	GCNGC	2 cut(s)	887, 1077
FokI	GGATG	3 cut(s)	740, 970, 983
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	2 cut(s)	887, 1077
FspBI	CTAG	2 cut(s)	1103, 1128
GluI	GCNGC	2 cut(s)	887, 1077
HgaI	GACGC	1 cut(s)	227
Hin1II	CATG	5 cut(s)	94, 196, 560, 661, 682
HincII	GTYRAC	2 cut(s)	217, 667
HindII	GTYRAC	2 cut(s)	217, 667
HinfI	GANTC	4 cut(s)	38, 147, 269, 713
HpaI	GTTAAC	1 cut(s)	667
HphI	GGTGA	2 cut(s)	665, 1154
Hpy166II	GTNNAC	2 cut(s)	217, 667
Hpy188III	TCNNGA	2 cut(s)	91, 161
Hpy8I	GTNNAC	2 cut(s)	217, 667
HpyAV	CCTTC	3 cut(s)	196, 988, 1080
HpyCH4III	ACNGT	4 cut(s)	214, 568, 653, 1018
HpyCH4IV	ACGT	2 cut(s)	118, 814
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 59
HpyF3I	CTNAG	2 cut(s)	441, 483
HpySE526I	ACGT	2 cut(s)	118, 814
Hsp92II	CATG	5 cut(s)	94, 196, 560, 661, 682
KspAI	GTTAAC	1 cut(s)	667
Kzo9I	GATC	9 cut(s)	397, 550, 763, 837, 893, 938, 1090, 1099, 1157
LmnI	GCTCC	3 cut(s)	422, 1084, 1136
Lsp1109I	GCAGC	2 cut(s)	898, 1088
LweI	GCATC	7 cut(s)	247, 265, 456, 709, 760, 934, 948
MaeI	CTAG	2 cut(s)	1103, 1128
MaeII	ACGT	2 cut(s)	118, 814
MaeIII	GTNAC	4 cut(s)	161, 424, 653, 706
MalI	GATC	9 cut(s)	399, 552, 765, 839, 895, 940, 1092, 1101, 1159
MboI	GATC	9 cut(s)	397, 550, 763, 837, 893, 938, 1090, 1099, 1157
MboII	GAAGA	7 cut(s)	113, 156, 395, 457, 801, 1014, 1152
MflI	RGATCY	5 cut(s)	397, 763, 893, 938, 1090
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	8 cut(s)	282, 386, 411, 493, 593, 630, 881, 902
MlyI	GAGTC	2 cut(s)	47, 722
MseI	TTAA	2 cut(s)	188, 666
MslI	CAYNNNNRTG	1 cut(s)	197
MspA1I	CMGCKG	1 cut(s)	602
MspR9I	CCNGG	1 cut(s)	20
Mva1269I	GAATGC	2 cut(s)	55, 587
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	23, 59
NcoI	CCATGG	1 cut(s)	556
NdeII	GATC	9 cut(s)	397, 550, 763, 837, 893, 938, 1090, 1099, 1157
NlaIII	CATG	5 cut(s)	94, 196, 560, 661, 682
NlaIV	GGNNCC	1 cut(s)	696
NmuCI	GTSAC	2 cut(s)	161, 653
NspI	RCATGY	3 cut(s)	196, 661, 682
PaeI	GCATGC	1 cut(s)	682
PagI	TCATGA	1 cut(s)	90
PciI	ACATGT	1 cut(s)	657
PctI	GAATGC	2 cut(s)	55, 587
PfeI	GAWTC	2 cut(s)	147, 269
PkrI	GCNGC	2 cut(s)	888, 1078
PleI	GAGTC	2 cut(s)	46, 721
PpsI	GAGTC	2 cut(s)	46, 721
Ppu21I	YACGTR	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	694
PscI	ACATGT	1 cut(s)	657
Psp5II	RGGWCCY	1 cut(s)	694
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	696
PspPI	GGNCC	1 cut(s)	694
PspPPI	RGGWCCY	1 cut(s)	694
PstI	CTGCAG	1 cut(s)	1078
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	5 cut(s)	397, 763, 893, 938, 1090
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	188, 666
SatI	GCNGC	2 cut(s)	887, 1077
Sau3AI	GATC	9 cut(s)	397, 550, 763, 837, 893, 938, 1090, 1099, 1157
Sau96I	GGNCC	1 cut(s)	694
SchI	GAGTC	2 cut(s)	47, 722
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	7 cut(s)	247, 265, 456, 709, 760, 934, 948
SfcI	CTRYAG	1 cut(s)	1074
SinI	GGWCC	1 cut(s)	694
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	299, 470
SmoI	CTYRAG	2 cut(s)	299, 470
SphI	GCATGC	1 cut(s)	682
Sse9I	AATT	8 cut(s)	282, 386, 411, 493, 593, 630, 881, 902
SspMI	CTAG	2 cut(s)	1103, 1128
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	4 cut(s)	214, 568, 653, 1018
TaiI	ACGT	2 cut(s)	121, 817
TaqI	TCGA	3 cut(s)	622, 684, 1156
TasI	AATT	8 cut(s)	282, 386, 411, 493, 593, 630, 881, 902
TfiI	GAWTC	2 cut(s)	147, 269
Tru1I	TTAA	2 cut(s)	188, 666
Tru9I	TTAA	2 cut(s)	188, 666
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	2 cut(s)	161, 653
TseI	GCWGC	2 cut(s)	886, 1076
Tsp45I	GTSAC	2 cut(s)	161, 653
TspDTI	ATGAA	7 cut(s)	17, 87, 215, 396, 522, 973, 1142
TspRI	CASTG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	694
XapI	RAATTY	3 cut(s)	386, 411, 493
XceI	RCATGY	3 cut(s)	196, 661, 682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XspI	CTAG	2 cut(s)	1103, 1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.