pycom13g08680

Protein phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014723
Physical Location & Seq
Reverse (-)
5751518 .. 5752423
906 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g08680.1

Sequence Viewer

Length: 906 bp
ATGCACGATTCAATTGGAATTCCGCCCTGCTTCTCAGCCGGCACTCATCCCACCCCATCCGGCGTGATCAGGTCGGGGCAGAGCATGTTCATGTCAGTGTACAGAACGAAGATAGCCGGCCAATGCCGGCTGATCACCATCACCTGGCGCAAGAATCTGTTACTCCACGGCCTCTCTGTTTCAGTGCAAGGCCAAAACAGAGACGAAGAGTATCGATGCAAAATCGAGCTCAAGCCGTGGTACTTCTGGCGCAAGCAAGGCTCCAAGCAATTCACTGTGGACGGCAACGCCGTGGATGTCGTCTGGGACCTCAAAGCCGCGAAATTCAACGGCGAAACGGAGCCACAATCGGACTACTACGTCGCCATTGTCTGCGAAGACGAGGTGATTTTGCTCGTTGGTGATCTGAAGAAAGACGCATTCAGAAAAACTGGCTGCCGGCCGTCGCTCATTGAACCAATCTTGGTTTCGAGGAGGGAGCATTTGTTCGGGAAGAGGAAGTTTTCGACACGAATCAAGTTTCACGAGAAGGAGAATTTCCATGAGATTTTGATCGAGTGCAGCAACGGCTCAGATGGGTCTGATCCGGAGTTGGAGATAAAGATTGATGGGATCCAGGCCGTTCGTGTGAAGCGGCTTCATTGGAAGTTCAGAGGGAATGATTGTGTTGATGTGAACAGAAACAGAGTTGAAGTTTTTTGGGATGTTCATGACTGGCTGTTTTGCTCTGGTCCGAGGCACGGAATGTTCATATTTACGCCGGTATCGGCGGAGCAACCGTCGCTTTCGACCGTTGGCCAATCTTTGACTGAAGAGGTGTGTTCTGCTGTGGCAGTAGAGCAGGATAACGCAGGTGGCACATCCTCTCTGTTTTCCTTGTTCGTTTATGCTTGGAAGGTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868 PP2C

Protein Analysis

302

Amino Acids

34.22

Weight (kDa)

7.1

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 25 - 299 6e-104 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014723)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25740
malus_domestica MD13G1099400.v1.1 MD16G1100500.v1.1
prunus_persica Prupe.1G246500_v2.0.a1
pyrus_communis pycom13g08680 pycom16g08520
rosa_chinensis RchiOBHm_Chr4g0433181
rosa_laevigata RLG00000006776
rosa_multiflora Rmu_ssc0000295.1_g000012
rosa_roxburghii Rroxscaffold_5G00374680
rosa_rugosa Rorug04G0266500
rosa_samantha Rh4AG320300 Rh4BG328500 Rh4CG343900 Rh4DG323900
rosa_wichuraiana Rw0G008710 Rw4G027810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 842
AasI GACNNNNNNGTC 1 cut(s) 359
Acc36I ACCTGC 1 cut(s) 842
AccB7I CCANNNNNTGG 1 cut(s) 144
AccII CGCG 1 cut(s) 320
AccIII TCCGGA 1 cut(s) 586
AciI CCGC 4 cut(s) 23, 318, 634, 770
AclWI GGATC 3 cut(s) 578, 607, 620
AcoI YGGCCR 3 cut(s) 118, 440, 796
AcsI RAATTY 3 cut(s) 18, 323, 535
AcuI CTGAAG 2 cut(s) 428, 831
AfaI GTAC 2 cut(s) 101, 242
AfiI CCNNNNNNNGG 2 cut(s) 144, 740
AgsI TTSAA 4 cut(s) 12, 328, 455, 692
AjnI CCWGG 2 cut(s) 143, 615
AjuI GAANNNNNNNTTGG 2 cut(s) 451, 483
AloI GAACNNNNNNTCC 2 cut(s) 470, 502
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 3 cut(s) 578, 607, 620
Aor13HI TCCGGA 1 cut(s) 586
AoxI GGCC 6 cut(s) 118, 169, 190, 440, 618, 796
ApeKI GCWGC 2 cut(s) 435, 561
ApoI RAATTY 3 cut(s) 18, 323, 535
AspLEI GCGC 2 cut(s) 150, 252
AspS9I GGNCC 2 cut(s) 307, 731
AsuHPI GGTGA 4 cut(s) 127, 133, 397, 413
AvaII GGWCC 2 cut(s) 307, 731
BaeI ACNNNNGTAYC 2 cut(s) 747, 780
BalI TGGCCA 1 cut(s) 798
BamHI GGATCC 1 cut(s) 612
BanII GRGCYC 1 cut(s) 231
BauI CACGAG 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 422, 573
BccI CCATC 4 cut(s) 64, 146, 569, 602
BceAI ACGGC 8 cut(s) 184, 220, 275, 298, 346, 427, 583, 605
BciT130I CCWGG 2 cut(s) 145, 617
BclI TGATCA 2 cut(s) 66, 132
BcoDI GTCTC 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 842
BisI GCNGC 4 cut(s) 318, 436, 562, 635
BlsI GCNGC 4 cut(s) 319, 437, 563, 636
Bme1390I CCNGG 2 cut(s) 145, 617
Bme18I GGWCC 2 cut(s) 307, 731
BmgT120I GGNCC 2 cut(s) 307, 731
BmiI GGNNCC 4 cut(s) 262, 308, 342, 614
BmrFI CCNGG 2 cut(s) 145, 617
BmsI GCATC 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 215
Bsa29I ATCGAT 1 cut(s) 214
BsaBI GATNNNNATC 2 cut(s) 137, 551
BsaJI CCNNGG 4 cut(s) 166, 236, 291, 734
BsaWI WCCGGW 1 cut(s) 586
BsaXI ACNNNNNCTCC 4 cut(s) 470, 500, 764, 794
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 740
Bse118I RCCGGY 5 cut(s) 38, 116, 126, 438, 760
Bse1I ACTGG 2 cut(s) 436, 719
Bse8I GATNNNNATC 2 cut(s) 137, 551
BseAI TCCGGA 1 cut(s) 586
BseBI CCWGG 2 cut(s) 145, 617
BseCI ATCGAT 1 cut(s) 214
BseDI CCNNGG 4 cut(s) 166, 236, 291, 734
BseGI GGATG 5 cut(s) 46, 56, 301, 709, 860
BseJI GATNNNNATC 2 cut(s) 137, 551
BseLI CCNNNNNNNGG 2 cut(s) 144, 740
BseMII CTCAG 2 cut(s) 48, 585
BseNI ACTGG 2 cut(s) 436, 719
BseRI GAGGAG 1 cut(s) 487
BseX3I CGGCCG 1 cut(s) 440
BseXI GCAGC 2 cut(s) 422, 573
BsgI GTGCAG 1 cut(s) 580
Bsh1236I CGCG 1 cut(s) 320
Bsh1285I CGRYCG 2 cut(s) 443, 792
BshFI GGCC 6 cut(s) 120, 171, 192, 442, 620, 798
BshVI ATCGAT 1 cut(s) 214
BsiEI CGRYCG 2 cut(s) 443, 792
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 7 cut(s) 39, 60, 117, 127, 439, 587, 761
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 2 cut(s) 144, 740
BsmAI GTCTC 1 cut(s) 195
BsmBI CGTCTC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 320
BsmI GAATGC 1 cut(s) 419
BsnI GGCC 6 cut(s) 120, 171, 192, 442, 620, 798
Bsp1286I GDGCHC 1 cut(s) 231
Bsp13I TCCGGA 1 cut(s) 586
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 6 cut(s) 66, 132, 403, 552, 583, 612
BspACI CCGC 4 cut(s) 23, 318, 634, 770
BspANI GGCC 6 cut(s) 120, 171, 192, 442, 620, 798
BspCNI CTCAG 2 cut(s) 47, 584
BspDI ATCGAT 1 cut(s) 214
BspEI TCCGGA 1 cut(s) 586
BspFNI CGCG 1 cut(s) 320
BspHI TCATGA 1 cut(s) 709
BspLI GGNNCC 4 cut(s) 262, 308, 342, 614
BspMI ACCTGC 1 cut(s) 842
BspPI GGATC 3 cut(s) 578, 607, 620
BsrFI RCCGGY 5 cut(s) 38, 116, 126, 438, 760
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 2 cut(s) 436, 719
BssAI RCCGGY 5 cut(s) 38, 116, 126, 438, 760
BssECI CCNNGG 4 cut(s) 166, 236, 291, 734
BssMI GATC 6 cut(s) 66, 132, 403, 552, 583, 612
BssSI CACGAG 1 cut(s) 524
Bst2BI CACGAG 1 cut(s) 524
Bst2UI CCWGG 2 cut(s) 145, 617
Bst4CI ACNGT 3 cut(s) 277, 780, 793
Bst6I CTCTTC 3 cut(s) 201, 488, 807
BstAUI TGTACA 1 cut(s) 99
BstC8I GCNNGC 5 cut(s) 40, 118, 128, 254, 440
BstDEI CTNAG 2 cut(s) 34, 571
BstDSI CCRYGG 3 cut(s) 166, 236, 291
BstF5I GGATG 5 cut(s) 46, 56, 301, 709, 860
BstFNI CGCG 1 cut(s) 320
BstHHI GCGC 2 cut(s) 150, 252
BstKTI GATC 6 cut(s) 69, 135, 406, 555, 586, 615
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 6 cut(s) 66, 132, 403, 552, 583, 612
BstMCI CGRYCG 2 cut(s) 443, 792
BstMWI GCNNNNNNNGC 3 cut(s) 258, 567, 781
BstNI CCWGG 2 cut(s) 145, 617
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 2 cut(s) 143, 615
BstUI CGCG 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 422, 573
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 612
BstYI RGATCY 1 cut(s) 612
BstZI CGGCCG 1 cut(s) 440
Bsu15I ATCGAT 1 cut(s) 214
BsuRI GGCC 6 cut(s) 120, 171, 192, 442, 620, 798
BsuTUI ATCGAT 1 cut(s) 214
BtgI CCRYGG 3 cut(s) 166, 236, 291
BtsCI GGATG 5 cut(s) 46, 56, 301, 709, 860
BtsIMutI CAGTG 3 cut(s) 102, 189, 273
BveI ACCTGC 1 cut(s) 842
Cac8I GCNNGC 5 cut(s) 40, 118, 128, 254, 440
CciI TCATGA 1 cut(s) 709
CfoI GCGC 2 cut(s) 150, 252
Cfr10I RCCGGY 5 cut(s) 38, 116, 126, 438, 760
Cfr13I GGNCC 2 cut(s) 307, 731
ClaI ATCGAT 1 cut(s) 214
CseI GACGC 1 cut(s) 425
Csp6I GTAC 2 cut(s) 100, 241
CviAII CATG 4 cut(s) 85, 91, 542, 710
CviQI GTAC 2 cut(s) 100, 241
DdeI CTNAG 2 cut(s) 34, 571
DpnI GATC 6 cut(s) 68, 134, 405, 554, 585, 614
DpnII GATC 6 cut(s) 66, 132, 403, 552, 583, 612
DrdI GACNNNNNNGTC 1 cut(s) 359
DseDI GACNNNNNNGTC 1 cut(s) 359
EaeI YGGCCR 3 cut(s) 118, 440, 796
EagI CGGCCG 1 cut(s) 440
Eam1104I CTCTTC 3 cut(s) 201, 488, 807
EarI CTCTTC 3 cut(s) 201, 488, 807
EciI GGCGGA 2 cut(s) 12, 785
Ecl136II GAGCTC 1 cut(s) 229
EclXI CGGCCG 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 307, 731
Eco52I CGGCCG 1 cut(s) 440
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 2 cut(s) 428, 831
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 307
EcoRI GAATTC 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 143, 615
EcoT38I GRGCYC 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 195
FaeI CATG 4 cut(s) 88, 94, 545, 713
FaiI YATR 6 cut(s) 86, 92, 543, 711, 752, 888
FaqI GGGAC 1 cut(s) 320
FatI CATG 4 cut(s) 84, 90, 541, 709
FbaI TGATCA 2 cut(s) 66, 132
Fnu4HI GCNGC 4 cut(s) 318, 436, 562, 635
FokI GGATG 5 cut(s) 33, 43, 308, 716, 847
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 4 cut(s) 318, 436, 562, 635
GlaI GCGC 2 cut(s) 149, 251
GluI GCNGC 4 cut(s) 318, 436, 562, 635
HaeIII GGCC 6 cut(s) 120, 171, 192, 442, 620, 798
HapII CCGG 7 cut(s) 39, 60, 117, 127, 439, 587, 761
HgaI GACGC 1 cut(s) 425
HhaI GCGC 2 cut(s) 150, 252
Hin1II CATG 4 cut(s) 88, 94, 545, 713
Hin6I GCGC 2 cut(s) 148, 250
HinP1I GCGC 2 cut(s) 148, 250
HinfI GANTC 3 cut(s) 8, 154, 513
HpaII CCGG 7 cut(s) 39, 60, 117, 127, 439, 587, 761
HphI GGTGA 4 cut(s) 127, 133, 397, 413
Hpy166II GTNNAC 3 cut(s) 100, 280, 676
Hpy188I TCNGA 7 cut(s) 352, 408, 425, 574, 583, 653, 735
Hpy188III TCNNGA 4 cut(s) 490, 524, 587, 710
Hpy8I GTNNAC 3 cut(s) 100, 280, 676
Hpy99I CGWCG 3 cut(s) 365, 448, 784
HpyAV CCTTC 2 cut(s) 523, 889
HpyCH4III ACNGT 3 cut(s) 277, 780, 793
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 4 cut(s) 4, 187, 219, 561
HpyF10VI GCNNNNNNNGC 3 cut(s) 258, 567, 781
HpyF3I CTNAG 2 cut(s) 34, 571
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 4 cut(s) 88, 94, 545, 713
HspAI GCGC 2 cut(s) 148, 250
Kpn2I TCCGGA 1 cut(s) 586
KroI GCCGGC 4 cut(s) 38, 116, 126, 438
KroNI GCCGGC 4 cut(s) 40, 118, 128, 440
Ksp22I TGATCA 2 cut(s) 66, 132
Kzo9I GATC 6 cut(s) 66, 132, 403, 552, 583, 612
LmnI GCTCC 4 cut(s) 266, 340, 478, 772
Lsp1109I GCAGC 2 cut(s) 422, 573
LweI GCATC 1 cut(s) 206
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 159
MalI GATC 6 cut(s) 68, 134, 405, 554, 585, 614
MboI GATC 6 cut(s) 66, 132, 403, 552, 583, 612
MboII GAAGA 6 cut(s) 121, 218, 389, 421, 505, 824
MfeI CAATTG 1 cut(s) 12
MflI RGATCY 1 cut(s) 612
MhlI GDGCHC 1 cut(s) 231
MlsI TGGCCA 1 cut(s) 798
MluCI AATT 5 cut(s) 12, 18, 269, 323, 535
MluNI TGGCCA 1 cut(s) 798
MmeI TCCRAC 1 cut(s) 573
Mox20I TGGCCA 1 cut(s) 798
MroI TCCGGA 1 cut(s) 586
MroNI GCCGGC 4 cut(s) 38, 116, 126, 438
MscI TGGCCA 1 cut(s) 798
MslI CAYNNNNRTG 2 cut(s) 89, 95
Msp20I TGGCCA 1 cut(s) 798
MspI CCGG 7 cut(s) 39, 60, 117, 127, 439, 587, 761
MspR9I CCNGG 2 cut(s) 145, 617
MunI CAATTG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 419
MvaI CCWGG 2 cut(s) 145, 617
MvnI CGCG 1 cut(s) 320
MwoI GCNNNNNNNGC 3 cut(s) 258, 567, 781
NaeI GCCGGC 4 cut(s) 40, 118, 128, 440
NdeII GATC 6 cut(s) 66, 132, 403, 552, 583, 612
NgoMIV GCCGGC 4 cut(s) 38, 116, 126, 438
NlaIII CATG 4 cut(s) 88, 94, 545, 713
NlaIV GGNNCC 4 cut(s) 262, 308, 342, 614
NspI RCATGY 1 cut(s) 88
PagI TCATGA 1 cut(s) 709
PaqCI CACCTGC 1 cut(s) 842
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PctI GAATGC 1 cut(s) 419
PdiI GCCGGC 4 cut(s) 40, 118, 128, 440
PfeI GAWTC 3 cut(s) 8, 154, 513
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 4 cut(s) 319, 437, 563, 636
PpuMI RGGWCCY 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 307
Psp6I CCWGG 2 cut(s) 143, 615
PspGI CCWGG 2 cut(s) 143, 615
PspN4I GGNNCC 4 cut(s) 262, 308, 342, 614
PspPI GGNCC 2 cut(s) 307, 731
PspPPI RGGWCCY 1 cut(s) 307
PsuI RGATCY 1 cut(s) 612
RsaI GTAC 2 cut(s) 101, 242
RsaNI GTAC 2 cut(s) 100, 241
RseI CAYNNNNRTG 2 cut(s) 89, 95
SacI GAGCTC 1 cut(s) 231
SatI GCNGC 4 cut(s) 318, 436, 562, 635
Sau3AI GATC 6 cut(s) 66, 132, 403, 552, 583, 612
Sau96I GGNCC 2 cut(s) 307, 731
ScrFI CCNGG 2 cut(s) 145, 617
SduI GDGCHC 1 cut(s) 231
SetI ASST 9 cut(s) 74, 146, 231, 312, 363, 387, 819, 856, 900
SfaNI GCATC 1 cut(s) 206
SinI GGWCC 2 cut(s) 307, 731
SmiMI CAYNNNNRTG 2 cut(s) 89, 95
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 5 cut(s) 12, 18, 269, 323, 535
SsiI CCGC 4 cut(s) 23, 318, 634, 770
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 143, 615
TaaI ACNGT 3 cut(s) 277, 780, 793
TaiI ACGT 1 cut(s) 363
TaqI TCGA 6 cut(s) 214, 225, 470, 506, 555, 788
TasI AATT 5 cut(s) 12, 18, 269, 323, 535
TatI WGTACW 1 cut(s) 99
TauI GCSGC 2 cut(s) 320, 637
TfiI GAWTC 3 cut(s) 8, 154, 513
TscAI CASTG 3 cut(s) 102, 189, 280
TseI GCWGC 2 cut(s) 435, 561
TspDTI ATGAA 4 cut(s) 79, 629, 698, 739
TspGWI ACGGA 2 cut(s) 353, 756
TspRI CASTG 3 cut(s) 102, 189, 280
Van91I CCANNNNNTGG 1 cut(s) 144
VpaK11BI GGWCC 2 cut(s) 307, 731
XapI RAATTY 3 cut(s) 18, 323, 535
XceI RCATGY 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.