Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007302

Physical Location & Seq

Genomic Coordinates Forward (+)

6856216 .. 6857092

Gene Structure 877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGGATGGCAAGGAAGAGATCCGTATACCGATTTCAGAGGAGCTGGATTCATTTCTTTGGAGAACCTGCCGTTCTTTGCAAGGACATTTTCGGCATCTTTACAGTGTCTATTGAAAAAGCAGAGAGGAAAGCGAGCTGCTTGGGAATATCCTTTCGCTGTTGCTGGTGTCAACATCACGTTTATGATCATGCAAATGCTTGACCTTGAAGCCAGAAAACCCAGGACTTTCATAAGAACAGTTTTCTTACAAATGTTGTTAGAAAATGAATGGACCTTCGACTTGCTGTACTGCGTTGTGTTCATGGTAATGGACAAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

108

Amino Acids

12.6

Weight (kDa)

9.1

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	1 - 106	3.8e-28	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67400 AT3G43400
fragaria_vesca	FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860
malus_domestica	MD13G1118100.v1.1
prunus_persica	Prupe.1G226900_v2.0.a1 Prupe.1G226900_v2.0.a1
pyrus_communis	pycom13g10220 pycom13g10280
rosa_chinensis	RchiOBHm_Chr4g0430431
rosa_laevigata	RLG00000006977
rosa_multiflora	Rmu_sc0000131.1_g000042
rosa_roxburghii	Rroxscaffold_5G00372210
rosa_rugosa	Rorug04G0243100 Rorug04G0243200
rosa_samantha	Rh4AG299400 Rh4BG306200 Rh4CG322100 Rh4DG303600
rosa_wichuraiana	Rw4G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	26
AclWI	GGATC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	115, 209
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	2 cut(s)	44, 137
AluI	AGCT	2 cut(s)	44, 137
AlwI	GGATC	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	223
BclI	TGATCA	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	75
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	19, 186
BspMI	ACCTGC	1 cut(s)	75
BspPI	GGATC	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	2 cut(s)	19, 186
BssNAI	GTATAC	1 cut(s)	27
Bst1107I	GTATAC	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	3 cut(s)	105, 241, 321
Bst6I	CTCTTC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	11
BstKTI	GATC	2 cut(s)	22, 189
BstMBI	GATC	2 cut(s)	19, 186
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BstZ17I	GTATAC	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	110
BveI	ACCTGC	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	2 cut(s)	190, 304
CviJI	RGCY	3 cut(s)	44, 137, 212
CviKI_1	RGCY	3 cut(s)	44, 137, 212
CviQI	GTAC	1 cut(s)	289
DpnI	GATC	2 cut(s)	21, 188
DpnII	GATC	2 cut(s)	19, 186
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	221
FaeI	CATG	2 cut(s)	193, 307
FaiI	YATR	5 cut(s)	27, 185, 191, 233, 305
FatI	CATG	2 cut(s)	189, 303
FbaI	TGATCA	1 cut(s)	186
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	193, 307
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	1 cut(s)	48
Hpy166II	GTNNAC	2 cut(s)	27, 172
Hpy188I	TCNGA	1 cut(s)	38
Hpy8I	GTNNAC	2 cut(s)	27, 172
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	3 cut(s)	105, 241, 321
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	2 cut(s)	80, 193
HpySE526I	ACGT	1 cut(s)	179
Hsp92II	CATG	2 cut(s)	193, 307
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	2 cut(s)	19, 186
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	6 cut(s)	30, 80, 150, 208, 226, 235
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	104
MaeII	ACGT	1 cut(s)	179
MalI	GATC	2 cut(s)	21, 188
MboI	GATC	2 cut(s)	19, 186
MboII	GAAGA	1 cut(s)	27
MflI	RGATCY	1 cut(s)	19
MnlI	CCTC	2 cut(s)	32, 119
MslI	CAYNNNNRTG	3 cut(s)	182, 194, 308
MspR9I	CCNGG	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	223
NdeII	GATC	2 cut(s)	19, 186
NlaIII	CATG	2 cut(s)	193, 307
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	3 cut(s)	182, 194, 308
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	2 cut(s)	19, 186
Sau96I	GGNCC	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	223
SetI	ASST	6 cut(s)	46, 69, 139, 182, 207, 278
SfaNI	GCATC	1 cut(s)	104
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	3 cut(s)	182, 194, 308
StyD4I	CCNGG	1 cut(s)	221
TaaI	ACNGT	3 cut(s)	105, 241, 321
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	1 cut(s)	279
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	48
TscAI	CASTG	1 cut(s)	110
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	4 cut(s)	40, 220, 282, 292
TspGWI	ACGGA	1 cut(s)	12
TspRI	CASTG	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.