Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007149

Physical Location & Seq

Genomic Coordinates Forward (+)

8760879 .. 8761940

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAAGAAAAAGTTGACCCTGAAACTGGCAAAGTTGGAATTCCTAAACTTTTCAACAACAAACCTGGCAAAAGTGTGAACCTAATGGTGGCTAAACCTCCATATTTCTTTTATGGAAATATTGTGAGTTTAGCATATGATTCCTGGGCAAAAATTTCTCAGTTCTTGTATGGTCTTGAGCCTGAATACGTGAATACTCAATTCTTCTCGTCCTTGAGTAGAAGGGAAGGTTATGTACACAATCTCCCCACGGAGAACAGGTTTCGCATTGTTCCTGAGCCACCAATGACCATTGAGGATGCAATGCCACATACCAAGAAATGGTGGCCTTCGTGGGATACAAGGAAGCAAGTGATGTGCATCAGTTCTGAAACCAGTGGGATAACTAATCTTTGTGATAGGCTTGGAAGGTTGCTTTCGAATTCTCATGGACTGCCCTCTCCTGAGCAACAAAGGGACATCATTCATCATTGTCGCTCATCTAATCTTGTGTGGGTTGGAAAACACAAATTAGGCCCTATAGAGCCTGAATATTTAGAGCGCATCCTAGGCTACCCATCGAGTCACACTCAAGTTCCCGAATGCAGTTTAGCAGAAAGGCTTCTCTCACTTAAATATTGCTTTCAGACAGATACTTTGGGTTATCATCTTTCTGCGCTGAAGTCGATGTACCCAGAAGGATTAACAGTTTTCTCAGTTTTCAGTGGAATAGGTGGGGTCGAAGTTGCTTTGCACCGGCTTGGCATTAAATTGAAAGGAGTTGTATCTGTAGAAACTTCCGCAACGAAGAGGAAGATCCTAAGGAGGTGGTGGGAGACAACGAGACAGACTGGGCACTTGGAGCAAATCGAAGATGTTCAAAAGTTGACAAGTAACAAGCTTGAAAATTTGATGAGGAAATTCGGTGGTTTTGATTTTATCATTTGTCAGCAGCCGTGCAGTGACTCAATTTCTAAGCTTCCTCCAGAGAGTGACTTTGTCCCAGGTTTTGACTTCTCCTTGTTTTATGAGTTTGTTCGTGTTTTGCAACGCGTGAGAACTATGTCAGAAAGAAAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_methylase

Protein Analysis

354

Amino Acids

40.44

Weight (kDa)

8.83

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17310 AT3G17310 AT3G17310
fragaria_vesca	FvH4_1g24280 FvH4_1g24280 FvH4_1g24280 FvH4_1g24280 FvH4_1g24280
malus_domestica	MD13G1146100.v1.1 MD16G1140200.v1.1
prunus_persica	Prupe.1G109800_v2.0.a1
pyrus_communis	pycom13g12570 pycom13g12580 pycom16g12430
rosa_chinensis	RchiOBHm_Chr2g0120771
rosa_laevigata	RLG00000018580
rosa_multiflora	Rmu_sc0000319.1_g000003
rosa_roxburghii	Rroxscaffold_2G00122960
rosa_rugosa	Rorug02G0231300 Rorug02G0231300
rosa_samantha	Rh2AG287800 Rh2BG299100 Rh2CG277100 Rh2DG313000
rosa_wichuraiana	Rw2G023070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	321
AccII	CGCG	1 cut(s)	1032
AciI	CCGC	1 cut(s)	780
AclWI	GGATC	1 cut(s)	790
AcsI	RAATTY	5 cut(s)	39, 153, 421, 886, 899
AcuI	CTGAAG	1 cut(s)	680
AfaI	GTAC	2 cut(s)	237, 671
AfiI	CCNNNNNNNGG	3 cut(s)	26, 88, 321
AflIII	ACRYGT	1 cut(s)	1030
AgsI	TTSAA	4 cut(s)	55, 754, 860, 884
AjnI	CCWGG	3 cut(s)	64, 143, 982
AluBI	AGCT	3 cut(s)	880, 958, 1059
AluI	AGCT	3 cut(s)	880, 958, 1059
Alw26I	GTCTC	2 cut(s)	809, 817
AlwI	GGATC	1 cut(s)	790
AoxI	GGCC	2 cut(s)	326, 514
ApeKI	GCWGC	1 cut(s)	931
ApoI	RAATTY	5 cut(s)	39, 153, 421, 886, 899
ArsI	GACNNNNNNTTYG	2 cut(s)	619, 651
Asp700I	GAANNNNTTC	2 cut(s)	600, 855
AspA2I	CCTAGG	1 cut(s)	547
AspLEI	GCGC	2 cut(s)	543, 658
AspS9I	GGNCC	1 cut(s)	515
AsuII	TTCGAA	1 cut(s)	419
AvrII	CCTAGG	1 cut(s)	547
AxyI	CCTNAGG	1 cut(s)	800
BaeGI	GKGCMC	1 cut(s)	837
BarI	GAAGNNNNNNTAC	4 cut(s)	219, 251, 653, 685
BbvI	GCAGC	1 cut(s)	943
BccI	CCATC	1 cut(s)	565
BceAI	ACGGC	1 cut(s)	919
BciT130I	CCWGG	3 cut(s)	66, 145, 984
BciVI	GTATCC	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	809, 817
BfaI	CTAG	1 cut(s)	548
BfmI	CTRYAG	2 cut(s)	519, 768
BfuI	GTATCC	1 cut(s)	331
BisI	GCNGC	1 cut(s)	932
BlnI	CCTAGG	1 cut(s)	547
BlsI	GCNGC	1 cut(s)	933
Bme1390I	CCNGG	3 cut(s)	66, 145, 984
BmgT120I	GGNCC	1 cut(s)	515
BmrFI	CCNGG	3 cut(s)	66, 145, 984
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	3 cut(s)	289, 369, 552
BmuI	ACTGGG	1 cut(s)	840
BplI	GAGNNNNNCTC	2 cut(s)	553, 585
BpmI	CTGGAG	1 cut(s)	948
Bpu10I	CCTNAGC	2 cut(s)	276, 444
Bpu14I	TTCGAA	1 cut(s)	419
BpuEI	CTTGAG	3 cut(s)	197, 235, 555
BsaAI	YACGTR	1 cut(s)	190
BsaBI	GATNNNNATC	1 cut(s)	359
BsaJI	CCNNGG	4 cut(s)	144, 249, 547, 982
BsaXI	ACNNNNNCTCC	4 cut(s)	228, 245, 258, 275
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 88, 321
Bse118I	RCCGGY	1 cut(s)	735
Bse1I	ACTGG	3 cut(s)	31, 375, 835
Bse21I	CCTNAGG	1 cut(s)	800
Bse3DI	GCAATG	1 cut(s)	309
Bse8I	GATNNNNATC	1 cut(s)	359
BseBI	CCWGG	3 cut(s)	66, 145, 984
BseDI	CCNNGG	4 cut(s)	144, 249, 547, 982
BseGI	GGATG	2 cut(s)	304, 543
BseJI	GATNNNNATC	1 cut(s)	359
BseLI	CCNNNNNNNGG	3 cut(s)	26, 88, 321
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	4 cut(s)	173, 267, 435, 708
BseNI	ACTGG	3 cut(s)	31, 375, 835
BseSI	GKGCMC	1 cut(s)	837
BseXI	GCAGC	1 cut(s)	943
BsgI	GTGCAG	1 cut(s)	958
Bsh1236I	CGCG	1 cut(s)	1032
BshFI	GGCC	2 cut(s)	328, 516
BsiSI	CCGG	1 cut(s)	736
BslFI	GGGAC	2 cut(s)	470, 965
BslI	CCNNNNNNNGG	3 cut(s)	26, 88, 321
BsmAI	GTCTC	2 cut(s)	809, 817
BsmFI	GGGAC	2 cut(s)	470, 965
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	2 cut(s)	328, 516
Bsp119I	TTCGAA	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	837
Bsp1407I	TGTACA	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	795
BspACI	CCGC	1 cut(s)	780
BspANI	GGCC	2 cut(s)	328, 516
BspCNI	CTCAG	4 cut(s)	172, 268, 436, 707
BspFNI	CGCG	1 cut(s)	1032
BspPI	GGATC	1 cut(s)	790
BspT104I	TTCGAA	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	735
BsrGI	TGTACA	1 cut(s)	235
BsrI	ACTGG	3 cut(s)	31, 375, 835
BssAI	RCCGGY	1 cut(s)	735
BssECI	CCNNGG	4 cut(s)	144, 249, 547, 982
BssMI	GATC	1 cut(s)	795
BssT1I	CCWWGG	1 cut(s)	547
Bst2UI	CCWGG	3 cut(s)	66, 145, 984
Bst4CI	ACNGT	1 cut(s)	688
Bst6I	CTCTTC	1 cut(s)	782
BstAUI	TGTACA	1 cut(s)	235
BstBAI	YACGTR	1 cut(s)	190
BstBI	TTCGAA	1 cut(s)	419
BstDEI	CTNAG	6 cut(s)	159, 276, 444, 694, 800, 954
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	304, 543
BstFNI	CGCG	1 cut(s)	1032
BstHHI	GCGC	2 cut(s)	543, 658
BstKTI	GATC	1 cut(s)	798
BstMAI	GTCTC	2 cut(s)	809, 817
BstMBI	GATC	1 cut(s)	795
BstMWI	GCNNNNNNNGC	2 cut(s)	549, 841
BstNI	CCWGG	3 cut(s)	66, 145, 984
BstSCI	CCNGG	3 cut(s)	64, 143, 982
BstSFI	CTRYAG	2 cut(s)	519, 768
BstSLI	GKGCMC	1 cut(s)	837
BstUI	CGCG	1 cut(s)	1032
BstV1I	GCAGC	1 cut(s)	943
BstX2I	RGATCY	1 cut(s)	795
BstYI	RGATCY	1 cut(s)	795
Bsu36I	CCTNAGG	1 cut(s)	800
BsuI	GTATCC	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	328, 516
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	304, 543
BtsI	GCAGTG	1 cut(s)	946
BtsIMutI	CAGTG	3 cut(s)	382, 709, 946
CfoI	GCGC	2 cut(s)	543, 658
Cfr10I	RCCGGY	1 cut(s)	735
Cfr13I	GGNCC	1 cut(s)	515
Csp6I	GTAC	2 cut(s)	236, 670
CviAII	CATG	1 cut(s)	428
CviQI	GTAC	2 cut(s)	236, 670
DdeI	CTNAG	6 cut(s)	159, 276, 444, 694, 800, 954
DpnI	GATC	1 cut(s)	797
DpnII	GATC	1 cut(s)	795
Eam1104I	CTCTTC	1 cut(s)	782
EarI	CTCTTC	1 cut(s)	782
Eco130I	CCWWGG	1 cut(s)	547
Eco57I	CTGAAG	1 cut(s)	680
Eco81I	CCTNAGG	1 cut(s)	800
EcoO109I	RGGNCCY	1 cut(s)	515
EcoRI	GAATTC	2 cut(s)	39, 421
EcoRII	CCWGG	3 cut(s)	64, 143, 982
EcoT14I	CCWWGG	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	1 cut(s)	431
FaqI	GGGAC	2 cut(s)	470, 965
FatI	CATG	1 cut(s)	427
FauNDI	CATATG	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	932
FokI	GGATG	2 cut(s)	311, 530
Fsp4HI	GCNGC	1 cut(s)	932
FspBI	CTAG	1 cut(s)	548
GlaI	GCGC	2 cut(s)	542, 657
GluI	GCNGC	1 cut(s)	932
GsuI	CTGGAG	1 cut(s)	948
HaeIII	GGCC	2 cut(s)	328, 516
HapII	CCGG	1 cut(s)	736
HhaI	GCGC	2 cut(s)	543, 658
Hin1II	CATG	1 cut(s)	431
Hin6I	GCGC	2 cut(s)	541, 656
HinP1I	GCGC	2 cut(s)	541, 656
HincII	GTYRAC	2 cut(s)	16, 867
HindII	GTYRAC	2 cut(s)	16, 867
HindIII	AAGCTT	2 cut(s)	878, 956
HinfI	GANTC	3 cut(s)	140, 562, 944
HpaII	CCGG	1 cut(s)	736
Hpy166II	GTNNAC	4 cut(s)	16, 79, 238, 867
Hpy188I	TCNGA	3 cut(s)	370, 627, 1048
Hpy188III	TCNNGA	5 cut(s)	176, 275, 443, 578, 965
Hpy8I	GTNNAC	4 cut(s)	16, 79, 238, 867
HpyAV	CCTTC	5 cut(s)	216, 221, 339, 402, 671
HpyCH4III	ACNGT	1 cut(s)	688
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	6 cut(s)	302, 360, 585, 733, 939, 1027
HpyF10VI	GCNNNNNNNGC	2 cut(s)	549, 841
HpyF3I	CTNAG	6 cut(s)	159, 276, 444, 694, 800, 954
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	431
HspAI	GCGC	2 cut(s)	541, 656
Kzo9I	GATC	1 cut(s)	795
LmnI	GCTCC	1 cut(s)	841
Lsp1109I	GCAGC	1 cut(s)	943
LweI	GCATC	3 cut(s)	289, 369, 552
MaeI	CTAG	1 cut(s)	548
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	4 cut(s)	563, 872, 941, 971
MalI	GATC	1 cut(s)	797
MboI	GATC	1 cut(s)	795
MboII	GAAGA	5 cut(s)	17, 196, 799, 805, 863
MflI	RGATCY	1 cut(s)	795
MhlI	GDGCHC	1 cut(s)	837
MluCI	AATT	9 cut(s)	39, 153, 200, 421, 509, 749, 886, 899, 948
MluI	ACGCGT	1 cut(s)	1030
MlyI	GAGTC	2 cut(s)	571, 938
MmeI	TCCRAC	2 cut(s)	16, 478
MnlI	CCTC	7 cut(s)	108, 289, 448, 783, 798, 888, 972
MroXI	GAANNNNTTC	2 cut(s)	600, 855
MseI	TTAA	3 cut(s)	612, 683, 747
MspI	CCGG	1 cut(s)	736
MspR9I	CCNGG	3 cut(s)	66, 145, 984
Mva1269I	GAATGC	1 cut(s)	587
MvaI	CCWGG	3 cut(s)	66, 145, 984
MvnI	CGCG	1 cut(s)	1032
MwoI	GCNNNNNNNGC	2 cut(s)	549, 841
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	1 cut(s)	795
NlaIII	CATG	1 cut(s)	431
NmuCI	GTSAC	3 cut(s)	563, 941, 971
NspV	TTCGAA	1 cut(s)	419
PctI	GAATGC	1 cut(s)	587
PdmI	GAANNNNTTC	2 cut(s)	600, 855
PfeI	GAWTC	1 cut(s)	140
PflFI	GACNNNGTC	1 cut(s)	977
PflMI	CCANNNNNTGG	1 cut(s)	321
PkrI	GCNGC	1 cut(s)	933
PleI	GAGTC	2 cut(s)	570, 938
PpsI	GAGTC	2 cut(s)	570, 938
Ppu21I	YACGTR	1 cut(s)	190
Psp6I	CCWGG	3 cut(s)	64, 143, 982
PspGI	CCWGG	3 cut(s)	64, 143, 982
PspPI	GGNCC	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	795
PsyI	GACNNNGTC	1 cut(s)	977
RsaI	GTAC	2 cut(s)	237, 671
RsaNI	GTAC	2 cut(s)	236, 670
SaqAI	TTAA	3 cut(s)	612, 683, 747
SatI	GCNGC	1 cut(s)	932
Sau3AI	GATC	1 cut(s)	795
Sau96I	GGNCC	1 cut(s)	515
SchI	GAGTC	2 cut(s)	571, 938
ScrFI	CCNGG	3 cut(s)	66, 145, 984
SduI	GDGCHC	1 cut(s)	837
SfaNI	GCATC	3 cut(s)	289, 369, 552
SfcI	CTRYAG	2 cut(s)	519, 768
SfuI	TTCGAA	1 cut(s)	419
SmlI	CTYRAG	3 cut(s)	176, 214, 570
SmoI	CTYRAG	3 cut(s)	176, 214, 570
Sse9I	AATT	9 cut(s)	39, 153, 200, 421, 509, 749, 886, 899, 948
SsiI	CCGC	1 cut(s)	780
SspI	AATATT	3 cut(s)	121, 533, 617
SspMI	CTAG	1 cut(s)	548
StyD4I	CCNGG	3 cut(s)	64, 143, 982
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	1 cut(s)	688
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	5 cut(s)	419, 560, 665, 720, 849
TasI	AATT	9 cut(s)	39, 153, 200, 421, 509, 749, 886, 899, 948
TatI	WGTACW	1 cut(s)	235
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	3 cut(s)	612, 683, 747
Tru9I	TTAA	3 cut(s)	612, 683, 747
TscAI	CASTG	3 cut(s)	382, 709, 946
TseFI	GTSAC	3 cut(s)	563, 941, 971
TseI	GCWGC	1 cut(s)	931
Tsp45I	GTSAC	3 cut(s)	563, 941, 971
TspDTI	ATGAA	1 cut(s)	455
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	3 cut(s)	382, 709, 946
Tth111I	GACNNNGTC	1 cut(s)	977
Van91I	CCANNNNNTGG	1 cut(s)	321
XapI	RAATTY	5 cut(s)	39, 153, 421, 886, 899
XmaJI	CCTAGG	1 cut(s)	547
XmnI	GAANNNNTTC	2 cut(s)	600, 855
XspI	CTAG	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.