Rh2AG287800

DNA (cytosine-5)-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
35237776 .. 35243275
5500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG287800.1

Sequence Viewer

Length: 1947 bp
ATGAGAGCAAATATGATTGGAATGGGATTTTCGCCGTCCCGCGTCGACAAAGTGATTGAAGAAAAGGGTGAAGAGGACGCCGAACTGTTGTTGGAGACACTTTTATCATATCAAGATACGCAGAAATCAGATTCTGGGTCATCAGATTCTCTGGATAGCTTATTTGGCGACAAAGATGCAAGCAGTGCTCTCGAGGTTTCTAGTATGATTCAACCAAAAGAGGAACCTGATTTATCTGATGGACTTGATGATGGAAAAAAGGCGTCCTTACTTACGATGAATTTTTCTAGAGATGAAGTTGAGTTTGCAATGAATAGGCTTGGTGAAGATGCTCCAATCAATGACTTGGTGGATTTTATCATTGCTTCTCAGATATCTGTGAAACTTGAGAATGATGTAGATTCAACCCCGGTTGATGAAGAAAAGGAGGATACAAGTGATGAAAAATTATATGGAATCATGGAGAAGTCAGTTCGTTTGCTTGAAATGGGGTTCTCTGAGAACCAAGTTTCTTTTGCAATTGAAAAGTTTGGCTCTGGAGCTCCACTTACAGATCTTGCAGAATCAATCGTTACAGGTCAAATTTATGATAATTGCTATGACAAAAAAATTAAGGTAGCATCCCATTCAAATCATTCACGCAATGTGTCCAGTTTTTTTGGAACGGCATCATATGGTTCAGTAAAAGTTGAAAATGAGGAATTTTATCCAGATACAGCTTCTCGATCAAGGGATCGTGACTTGGCAGATAATTATTTAGGGAAGCGGCCTAAGCAAGAGATCATTGATGATTCAAATTCTGTTCCTCAGTTTAGGGTGTCCAGGCCTATAGATTTCGGGGAAAATCGTAAAGGGAAAAGGCCAAAACGAGAGTATATTGATGATTCAAGCTCTTCTGCATGGATGGAAGAAAAAGTAGACCCTGAGATTTGCAAAGTTGGGAATCCAAAACTTCAGAGTGTGAACCAAATGGCCGCTAAACCCCCATATTTCTTCTATGGAAATGTTCTGAATCTACCATATGATTCCTGGTCCAAAGTTTCTCAATTCTTGTACGGCCATCAACCTGAATATGTCAATAATCAGTTCTTCTCAGCCTTGAGTAGAAGGGAAGGGTATGTACACAATCTCCCAACTGAGAACAGGTTTCGTATCCTTGAAGAGCCACCAATGACCATTCAGGATGCAATACCATATGCAAAGAATTTGTGGCCTCCGTGGGATACAAGGAAGCAATTGACCTGCATCAGTTCTGAAACCAGTGGCATATCTCAGCTGTGTGACAGGCTTGGAAGAATGGTTTCTGATTGTCGTGGAATGCTCTCACCTGAGAAACAGAGGGAAATCCTTCATCATTGCAACTCATTAAATCTTGTATGGGTTGGCCGAAACAAGTTGGGTCCTTTACAGCCTGAATACTTGGAACAAATCTTAGGCTATCCACTGAATCACACTAAAGTTGGTGAGAGTGGTGTAATTGAAAGACTTACTTCCCTCAAGTATTGCTTCCAGACAGACACATTGGCTTATCATCTTTCTGTTTTGAAGGCTTTGTACCCAGAAGGATTAACAATGTTCTCAATTTTTAGTGGAATAGGTGGAGCAGAGATAGCTTTACACAAGCTTGGCATTCCTTTGAAAGGTGTTGTATCTGTAGAGACTTGTGGAACAAAGAGAAGGATTCTTCGGAGGTGGTGGGAAACTACTGGCCAAATTGGGCAGTTGGAGCAAATTGATGACATCCAGAAACTAACAAGCAGCAAGCTTGAAAGTCTGATGAAAAGGTTTGGTGGTTTTGATTTCCTTATTTGTCAGAATCCATGTAGTTCTTCAGTTTCTAAAATTCCTGCGCAAAGTGGCAGTGATCCAGGCTTTGACTTCTCATTGTTTTATGAGTTTGTTCGTGTCTATCAACGTGTAAGAAATATGATGGATAGAAAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

648

Amino Acids

73.12

Weight (kDa)

5.13

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1851
Acc36I ACCTGC 1 cut(s) 1250
AccI GTMKAC 2 cut(s) 45, 918
AccII CGCG 1 cut(s) 42
AciI CCGC 3 cut(s) 40, 766, 975
AclWI GGATC 2 cut(s) 741, 1859
AcoI YGGCCR 4 cut(s) 972, 1057, 1384, 1708
AcsI RAATTY 6 cut(s) 280, 582, 701, 796, 1204, 1842
AcuI CTGAAG 2 cut(s) 938, 1815
AcyI GRCGYC 2 cut(s) 78, 263
AfaI GTAC 3 cut(s) 1055, 1122, 1556
AfiI CCNNNNNNNGG 1 cut(s) 1640
AflIII ACRYGT 1 cut(s) 1915
AjnI CCWGG 3 cut(s) 821, 1028, 1867
AluBI AGCT 9 cut(s) 159, 542, 719, 891, 1276, 1613, 1624, 1765, 1944
AluI AGCT 9 cut(s) 159, 542, 719, 891, 1276, 1613, 1624, 1765, 1944
Alw21I GWGCWC 2 cut(s) 190, 544
Alw26I GTCTC 2 cut(s) 89, 1652
AlwI GGATC 2 cut(s) 741, 1859
AlwNI CAGNNNCTG 1 cut(s) 134
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 8 cut(s) 767, 824, 860, 972, 1057, 1211, 1384, 1708
ApeKI GCWGC 1 cut(s) 1758
ApoI RAATTY 6 cut(s) 280, 582, 701, 796, 1204, 1842
Asp700I GAANNNNTTC 2 cut(s) 1300, 1347
AspLEI GCGC 1 cut(s) 1852
AspS9I GGNCC 2 cut(s) 1032, 1400
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 4 cut(s) 80, 335, 1317, 1475
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 2 cut(s) 1032, 1400
BalI TGGCCA 1 cut(s) 1710
BanII GRGCYC 1 cut(s) 544
BarI GAAGNNNNNNTAC 4 cut(s) 1104, 1136, 1538, 1570
Bbv12I GWGCWC 2 cut(s) 190, 544
BbvI GCAGC 1 cut(s) 1770
BccI CCATC 5 cut(s) 233, 245, 898, 1068, 1924
BceAI ACGGC 3 cut(s) 19, 681, 1072
BcgI CGANNNNNNTGC 4 cut(s) 158, 172, 192, 206
BciT130I CCWGG 3 cut(s) 823, 1030, 1869
BciVI GTATCC 3 cut(s) 424, 1163, 1216
BcnI CCSGG 1 cut(s) 410
BcoDI GTCTC 2 cut(s) 89, 1652
BfaI CTAG 2 cut(s) 201, 288
BfmI CTRYAG 2 cut(s) 828, 1653
BfuAI ACCTGC 1 cut(s) 1250
BfuI GTATCC 3 cut(s) 424, 1163, 1216
BglII AGATCT 1 cut(s) 553
BisI GCNGC 3 cut(s) 767, 975, 1759
BlsI GCNGC 3 cut(s) 768, 976, 1760
Bme1390I CCNGG 4 cut(s) 410, 823, 1030, 1869
Bme18I GGWCC 2 cut(s) 1032, 1400
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 1032, 1400
BmiI GGNNCC 2 cut(s) 225, 1401
BmrFI CCNGG 4 cut(s) 410, 823, 1030, 1869
BmsI GCATC 6 cut(s) 166, 319, 629, 677, 1174, 1254
BpmI CTGGAG 1 cut(s) 558
Bpu10I CCTNAGC 1 cut(s) 771
BpuEI CTTGAG 3 cut(s) 407, 1120, 1481
BpuMI CCSGG 1 cut(s) 410
BsaHI GRCGYC 2 cut(s) 78, 263
BsaJI CCNNGG 2 cut(s) 408, 1217
BsaXI ACNNNNNCTCC 2 cut(s) 1113, 1143
Bsc4I CCNNNNNNNGG 1 cut(s) 1640
Bse1I ACTGG 3 cut(s) 651, 1260, 1711
Bse3DI GCAATG 4 cut(s) 315, 360, 649, 1354
BseBI CCWGG 3 cut(s) 823, 1030, 1869
BseDI CCNNGG 2 cut(s) 408, 1217
BseGI GGATG 4 cut(s) 620, 909, 1189, 1740
BseLI CCNNNNNNNGG 1 cut(s) 1640
BseMI GCAATG 4 cut(s) 315, 360, 649, 1354
BseMII CTCAG 8 cut(s) 383, 489, 821, 915, 1107, 1128, 1286, 1320
BseNI ACTGG 3 cut(s) 651, 1260, 1711
BseXI GCAGC 1 cut(s) 1770
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 8 cut(s) 769, 826, 862, 974, 1059, 1213, 1386, 1710
BsiHKAI GWGCWC 2 cut(s) 190, 544
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 410
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 1640
BsmAI GTCTC 2 cut(s) 89, 1652
BsmFI GGGAC 1 cut(s) 22
BsmI GAATGC 2 cut(s) 1323, 1629
BsnI GGCC 8 cut(s) 769, 826, 862, 974, 1059, 1213, 1386, 1710
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 190, 544
Bsp1407I TGTACA 1 cut(s) 1120
Bsp143I GATC 5 cut(s) 553, 725, 733, 780, 1864
BspACI CCGC 3 cut(s) 40, 766, 975
BspANI GGCC 8 cut(s) 769, 826, 862, 974, 1059, 1213, 1386, 1710
BspCNI CTCAG 8 cut(s) 382, 490, 820, 916, 1106, 1129, 1285, 1321
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 225, 1401
BspMI ACCTGC 1 cut(s) 1250
BspPI GGATC 2 cut(s) 741, 1859
BspQI GCTCTTC 2 cut(s) 898, 1155
BsrDI GCAATG 4 cut(s) 315, 360, 649, 1354
BsrGI TGTACA 1 cut(s) 1120
BsrI ACTGG 3 cut(s) 651, 1260, 1711
BssECI CCNNGG 2 cut(s) 408, 1217
BssMI GATC 5 cut(s) 553, 725, 733, 780, 1864
BssNI GRCGYC 2 cut(s) 78, 263
Bst2UI CCWGG 3 cut(s) 823, 1030, 1869
Bst4CI ACNGT 1 cut(s) 87
Bst6I CTCTTC 3 cut(s) 66, 898, 1155
BstACI GRCGYC 2 cut(s) 78, 263
BstAPI GCANNNNNTGC 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 1120
BstC8I GCNNGC 2 cut(s) 181, 1763
BstDSI CCRYGG 1 cut(s) 1217
BstENI CCTNNNNNAGG 1 cut(s) 1638
BstF5I GGATG 4 cut(s) 620, 909, 1189, 1740
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 1 cut(s) 1852
BstKTI GATC 5 cut(s) 556, 728, 736, 783, 1867
BstMAI GTCTC 2 cut(s) 89, 1652
BstMBI GATC 5 cut(s) 553, 725, 733, 780, 1864
BstMWI GCNNNNNNNGC 5 cut(s) 165, 185, 772, 1610, 1726
BstNI CCWGG 3 cut(s) 823, 1030, 1869
BstSCI CCNGG 4 cut(s) 408, 821, 1028, 1867
BstSFI CTRYAG 2 cut(s) 828, 1653
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 1770
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BsuI GTATCC 3 cut(s) 424, 1163, 1216
BsuRI GGCC 8 cut(s) 769, 826, 862, 974, 1059, 1213, 1386, 1710
BtgI CCRYGG 1 cut(s) 1217
BtsCI GGATG 4 cut(s) 620, 909, 1189, 1740
BtsI GCAGTG 2 cut(s) 190, 1867
BtsIMutI CAGTG 4 cut(s) 190, 1267, 1442, 1867
BveI ACCTGC 1 cut(s) 1250
Cac8I GCNNGC 2 cut(s) 181, 1763
CaiI CAGNNNCTG 1 cut(s) 134
CfoI GCGC 1 cut(s) 1852
Cfr13I GGNCC 2 cut(s) 1032, 1400
CseI GACGC 3 cut(s) 31, 86, 252
Csp6I GTAC 3 cut(s) 1054, 1121, 1555
CviAII CATG 3 cut(s) 460, 900, 1821
CviQI GTAC 3 cut(s) 1054, 1121, 1555
DpnI GATC 5 cut(s) 555, 727, 735, 782, 1866
DpnII GATC 5 cut(s) 553, 725, 733, 780, 1864
EaeI YGGCCR 4 cut(s) 972, 1057, 1384, 1708
Eam1104I CTCTTC 3 cut(s) 66, 898, 1155
EarI CTCTTC 3 cut(s) 66, 898, 1155
Ecl136II GAGCTC 1 cut(s) 542
Eco147I AGGCCT 1 cut(s) 826
Eco24I GRGCYC 1 cut(s) 544
Eco32I GATATC 1 cut(s) 375
Eco47I GGWCC 2 cut(s) 1032, 1400
Eco53kI GAGCTC 1 cut(s) 542
Eco57I CTGAAG 2 cut(s) 938, 1815
Eco88I CYCGRG 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 542
EcoNI CCTNNNNNAGG 1 cut(s) 1638
EcoO109I RGGNCCY 1 cut(s) 1400
EcoRII CCWGG 3 cut(s) 821, 1028, 1867
EcoRV GATATC 1 cut(s) 375
EcoT38I GRGCYC 1 cut(s) 544
FaeI CATG 3 cut(s) 463, 903, 1824
FalI AAGNNNNNCTT 6 cut(s) 251, 283, 1474, 1506, 1490, 1522
FaqI GGGAC 1 cut(s) 22
FatI CATG 3 cut(s) 459, 899, 1820
FauI CCCGC 1 cut(s) 47
FauNDI CATATG 3 cut(s) 673, 1021, 1195
FblI GTMKAC 2 cut(s) 45, 918
Fnu4HI GCNGC 3 cut(s) 767, 975, 1759
FokI GGATG 4 cut(s) 607, 916, 1196, 1727
FriOI GRGCYC 1 cut(s) 544
Fsp4HI GCNGC 3 cut(s) 767, 975, 1759
FspBI CTAG 2 cut(s) 201, 288
FspI TGCGCA 1 cut(s) 1851
GlaI GCGC 1 cut(s) 1851
GluI GCNGC 3 cut(s) 767, 975, 1759
GsuI CTGGAG 1 cut(s) 558
HaeIII GGCC 8 cut(s) 769, 826, 862, 974, 1059, 1213, 1386, 1710
HapII CCGG 1 cut(s) 410
HgaI GACGC 3 cut(s) 31, 86, 252
HhaI GCGC 1 cut(s) 1852
Hin1I GRCGYC 2 cut(s) 78, 263
Hin1II CATG 3 cut(s) 463, 903, 1824
Hin6I GCGC 1 cut(s) 1850
HinP1I GCGC 1 cut(s) 1850
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 2 cut(s) 1622, 1763
HpaII CCGG 1 cut(s) 410
HphI GGTGA 4 cut(s) 80, 335, 1317, 1475
Hpy166II GTNNAC 4 cut(s) 46, 919, 964, 1123
Hpy8I GTNNAC 4 cut(s) 46, 919, 964, 1123
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 6 cut(s) 1101, 1106, 1358, 1540, 1556, 1671
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4IV ACGT 1 cut(s) 1915
HpyF10VI GCNNNNNNNGC 5 cut(s) 165, 185, 772, 1610, 1726
HpySE526I ACGT 1 cut(s) 1915
Hsp92I GRCGYC 2 cut(s) 78, 263
Hsp92II CATG 3 cut(s) 463, 903, 1824
HspAI GCGC 1 cut(s) 1850
Kzo9I GATC 5 cut(s) 553, 725, 733, 780, 1864
LguI GCTCTTC 2 cut(s) 898, 1155
LmnI GCTCC 5 cut(s) 337, 539, 547, 1601, 1726
Lsp1109I GCAGC 1 cut(s) 1770
LweI GCATC 6 cut(s) 166, 319, 629, 677, 1174, 1254
MaeI CTAG 2 cut(s) 201, 288
MaeII ACGT 1 cut(s) 1915
MaeIII GTNAC 3 cut(s) 571, 737, 1280
MalI GATC 5 cut(s) 555, 727, 735, 782, 1866
MboI GATC 5 cut(s) 553, 725, 733, 780, 1864
MfeI CAATTG 2 cut(s) 519, 1235
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 2 cut(s) 190, 544
MlsI TGGCCA 1 cut(s) 1710
MluNI TGGCCA 1 cut(s) 1710
MmeI TCCRAC 2 cut(s) 72, 1704
Mox20I TGGCCA 1 cut(s) 1710
MroXI GAANNNNTTC 2 cut(s) 1300, 1347
MscI TGGCCA 1 cut(s) 1710
MseI TTAA 3 cut(s) 612, 1367, 1568
Msp20I TGGCCA 1 cut(s) 1710
MspA1I CMGCKG 1 cut(s) 1276
MspI CCGG 1 cut(s) 410
MspR9I CCNGG 4 cut(s) 410, 823, 1030, 1869
MunI CAATTG 2 cut(s) 519, 1235
Mva1269I GAATGC 2 cut(s) 1323, 1629
MvaI CCWGG 3 cut(s) 823, 1030, 1869
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 5 cut(s) 165, 185, 772, 1610, 1726
NciI CCSGG 1 cut(s) 410
NdeI CATATG 3 cut(s) 673, 1021, 1195
NdeII GATC 5 cut(s) 553, 725, 733, 780, 1864
NlaIII CATG 3 cut(s) 463, 903, 1824
NlaIV GGNNCC 2 cut(s) 225, 1401
NmuCI GTSAC 2 cut(s) 737, 1280
NsbI TGCGCA 1 cut(s) 1851
PaeR7I CTCGAG 1 cut(s) 191
PceI AGGCCT 1 cut(s) 826
PciSI GCTCTTC 2 cut(s) 898, 1155
PctI GAATGC 2 cut(s) 1323, 1629
PdmI GAANNNNTTC 2 cut(s) 1300, 1347
PkrI GCNGC 3 cut(s) 768, 976, 1760
PpuMI RGGWCCY 1 cut(s) 1400
Psp124BI GAGCTC 1 cut(s) 544
Psp5II RGGWCCY 1 cut(s) 1400
Psp6I CCWGG 3 cut(s) 821, 1028, 1867
PspGI CCWGG 3 cut(s) 821, 1028, 1867
PspN4I GGNNCC 2 cut(s) 225, 1401
PspPI GGNCC 2 cut(s) 1032, 1400
PspPPI RGGWCCY 1 cut(s) 1400
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 553
PvuII CAGCTG 1 cut(s) 1276
RsaI GTAC 3 cut(s) 1055, 1122, 1556
RsaNI GTAC 3 cut(s) 1054, 1121, 1555
SacI GAGCTC 1 cut(s) 544
SalI GTCGAC 1 cut(s) 44
SapI GCTCTTC 2 cut(s) 898, 1155
SaqAI TTAA 3 cut(s) 612, 1367, 1568
SatI GCNGC 3 cut(s) 767, 975, 1759
Sau3AI GATC 5 cut(s) 553, 725, 733, 780, 1864
Sau96I GGNCC 2 cut(s) 1032, 1400
ScrFI CCNGG 4 cut(s) 410, 823, 1030, 1869
SduI GDGCHC 2 cut(s) 190, 544
SfaNI GCATC 6 cut(s) 166, 319, 629, 677, 1174, 1254
SfcI CTRYAG 2 cut(s) 828, 1653
Sfr274I CTCGAG 1 cut(s) 191
SinI GGWCC 2 cut(s) 1032, 1400
SlaI CTCGAG 1 cut(s) 191
SmlI CTYRAG 4 cut(s) 191, 386, 1099, 1496
SmoI CTYRAG 4 cut(s) 191, 386, 1099, 1496
SseBI AGGCCT 1 cut(s) 826
SsiI CCGC 3 cut(s) 40, 766, 975
SspMI CTAG 2 cut(s) 201, 288
SstI GAGCTC 1 cut(s) 544
StuI AGGCCT 1 cut(s) 826
StyD4I CCNGG 4 cut(s) 408, 821, 1028, 1867
TaaI ACNGT 1 cut(s) 87
TaiI ACGT 1 cut(s) 1918
TaqI TCGA 3 cut(s) 45, 192, 724
TatI WGTACW 1 cut(s) 1120
TauI GCSGC 2 cut(s) 769, 977
Tru1I TTAA 3 cut(s) 612, 1367, 1568
Tru9I TTAA 3 cut(s) 612, 1367, 1568
TscAI CASTG 4 cut(s) 190, 1267, 1449, 1867
TseFI GTSAC 2 cut(s) 737, 1280
TseI GCWGC 1 cut(s) 1758
Tsp45I GTSAC 2 cut(s) 737, 1280
TspDTI ATGAA 7 cut(s) 293, 309, 326, 432, 456, 1340, 1793
TspGWI ACGGA 1 cut(s) 1206
TspRI CASTG 4 cut(s) 190, 1267, 1449, 1867
VpaK11BI GGWCC 2 cut(s) 1032, 1400
XagI CCTNNNNNAGG 1 cut(s) 1638
XapI RAATTY 6 cut(s) 280, 582, 701, 796, 1204, 1842
XbaI TCTAGA 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 1026
XhoI CTCGAG 1 cut(s) 191
XmiI GTMKAC 2 cut(s) 45, 918
XmnI GAANNNNTTC 2 cut(s) 1300, 1347
XspI CTAG 2 cut(s) 201, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.