DNA (cytosine-5)-methyltransferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G17310 AT3G17310 AT3G17310 |
| fragaria_vesca | FvH4_1g24280 FvH4_1g24280 FvH4_1g24280 FvH4_1g24280 FvH4_1g24280 |
| malus_domestica | MD13G1146100.v1.1 MD16G1140200.v1.1 |
| prunus_persica | Prupe.1G109800_v2.0.a1 |
| pyrus_communis | pycom13g12570 pycom13g12580 pycom16g12430 |
| rosa_chinensis | RchiOBHm_Chr2g0120771 |
| rosa_laevigata | RLG00000018580 |
| rosa_multiflora | Rmu_sc0000319.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00122960 |
| rosa_rugosa | Rorug02G0231300 Rorug02G0231300 |
| rosa_samantha | Rh2AG287800 Rh2BG299100 Rh2CG277100 Rh2DG313000 |
| rosa_wichuraiana | Rw2G023070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 2013 |
| Acc36I | ACCTGC | 1 cut(s) | 1412 |
| AccI | GTMKAC | 2 cut(s) | 198, 1080 |
| AccII | CGCG | 1 cut(s) | 195 |
| AciI | CCGC | 3 cut(s) | 193, 928, 1137 |
| AclWI | GGATC | 2 cut(s) | 903, 2021 |
| AcoI | YGGCCR | 4 cut(s) | 1134, 1219, 1546, 1870 |
| AcsI | RAATTY | 6 cut(s) | 433, 735, 863, 958, 1366, 2004 |
| AcuI | CTGAAG | 2 cut(s) | 1100, 1977 |
| AcyI | GRCGYC | 2 cut(s) | 231, 416 |
| AfaI | GTAC | 4 cut(s) | 60, 1217, 1284, 1718 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 120, 1802 |
| AflIII | ACRYGT | 1 cut(s) | 2077 |
| AjnI | CCWGG | 3 cut(s) | 983, 1190, 2029 |
| Alw21I | GWGCWC | 2 cut(s) | 343, 697 |
| Alw26I | GTCTC | 2 cut(s) | 242, 1814 |
| AlwI | GGATC | 2 cut(s) | 903, 2021 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 287 |
| Ama87I | CYCGRG | 1 cut(s) | 344 |
| AoxI | GGCC | 8 cut(s) | 929, 986, 1022, 1134, 1219, 1373, 1546, 1870 |
| ApeKI | GCWGC | 2 cut(s) | 27, 1920 |
| ApoI | RAATTY | 6 cut(s) | 433, 735, 863, 958, 1366, 2004 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 27 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1462, 1509 |
| AspLEI | GCGC | 1 cut(s) | 2014 |
| AspS9I | GGNCC | 2 cut(s) | 1194, 1562 |
| AsuHPI | GGTGA | 5 cut(s) | 87, 233, 488, 1479, 1637 |
| AsuII | TTCGAA | 1 cut(s) | 14 |
| AvaI | CYCGRG | 1 cut(s) | 344 |
| AvaII | GGWCC | 2 cut(s) | 1194, 1562 |
| BalI | TGGCCA | 1 cut(s) | 1872 |
| BanII | GRGCYC | 1 cut(s) | 697 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1266, 1298 |
| Bbv12I | GWGCWC | 2 cut(s) | 343, 697 |
| BbvI | GCAGC | 2 cut(s) | 39, 1932 |
| BccI | CCATC | 5 cut(s) | 386, 398, 1060, 1230, 2086 |
| BceAI | ACGGC | 3 cut(s) | 172, 843, 1234 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 311, 325, 345, 359 |
| BciT130I | CCWGG | 3 cut(s) | 985, 1192, 2031 |
| BciVI | GTATCC | 3 cut(s) | 577, 1325, 1378 |
| BcoDI | GTCTC | 2 cut(s) | 242, 1814 |
| BfaI | CTAG | 3 cut(s) | 354, 441, 975 |
| BfmI | CTRYAG | 2 cut(s) | 990, 1815 |
| BfuAI | ACCTGC | 1 cut(s) | 1412 |
| BfuI | GTATCC | 3 cut(s) | 577, 1325, 1378 |
| BglII | AGATCT | 2 cut(s) | 72, 706 |
| BisI | GCNGC | 4 cut(s) | 28, 929, 1137, 1921 |
| BlsI | GCNGC | 4 cut(s) | 29, 930, 1138, 1922 |
| Bme1390I | CCNGG | 3 cut(s) | 985, 1192, 2031 |
| Bme18I | GGWCC | 2 cut(s) | 1194, 1562 |
| BmeT110I | CYCGRG | 1 cut(s) | 344 |
| BmgT120I | GGNCC | 2 cut(s) | 1194, 1562 |
| BmiI | GGNNCC | 2 cut(s) | 378, 1563 |
| BmrFI | CCNGG | 3 cut(s) | 985, 1192, 2031 |
| BmsI | GCATC | 7 cut(s) | 121, 319, 472, 791, 839, 1336, 1416 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 77, 109 |
| BpmI | CTGGAG | 1 cut(s) | 711 |
| Bpu10I | CCTNAGC | 1 cut(s) | 933 |
| Bpu14I | TTCGAA | 1 cut(s) | 14 |
| BpuEI | CTTGAG | 2 cut(s) | 560, 1643 |
| Bsa29I | ATCGAT | 1 cut(s) | 1896 |
| BsaHI | GRCGYC | 2 cut(s) | 231, 416 |
| BsaJI | CCNNGG | 1 cut(s) | 1379 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 71, 101, 1275, 1305 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 120, 1802 |
| Bse1I | ACTGG | 3 cut(s) | 813, 1422, 1873 |
| Bse3DI | GCAATG | 4 cut(s) | 468, 513, 811, 1516 |
| BseBI | CCWGG | 3 cut(s) | 985, 1192, 2031 |
| BseCI | ATCGAT | 1 cut(s) | 1896 |
| BseDI | CCNNGG | 1 cut(s) | 1379 |
| BseGI | GGATG | 4 cut(s) | 782, 1071, 1351, 1902 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 120, 1802 |
| BseMI | GCAATG | 4 cut(s) | 468, 513, 811, 1516 |
| BseMII | CTCAG | 8 cut(s) | 536, 642, 983, 1077, 1269, 1290, 1448, 1482 |
| BseNI | ACTGG | 3 cut(s) | 813, 1422, 1873 |
| BseXI | GCAGC | 2 cut(s) | 39, 1932 |
| Bsh1236I | CGCG | 1 cut(s) | 195 |
| BshFI | GGCC | 8 cut(s) | 931, 988, 1024, 1136, 1221, 1375, 1548, 1872 |
| BshVI | ATCGAT | 1 cut(s) | 1896 |
| BsiHKAI | GWGCWC | 2 cut(s) | 343, 697 |
| BsiHKCI | CYCGRG | 1 cut(s) | 344 |
| BslFI | GGGAC | 1 cut(s) | 175 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 120, 1802 |
| BsmAI | GTCTC | 2 cut(s) | 242, 1814 |
| BsmFI | GGGAC | 1 cut(s) | 175 |
| BsmI | GAATGC | 3 cut(s) | 104, 1485, 1791 |
| BsnI | GGCC | 8 cut(s) | 931, 988, 1024, 1136, 1221, 1375, 1548, 1872 |
| BsoBI | CYCGRG | 1 cut(s) | 344 |
| Bsp119I | TTCGAA | 1 cut(s) | 14 |
| Bsp1286I | GDGCHC | 2 cut(s) | 343, 697 |
| Bsp1407I | TGTACA | 1 cut(s) | 1282 |
| Bsp143I | GATC | 7 cut(s) | 34, 72, 706, 887, 895, 942, 2026 |
| Bsp19I | CCATGG | 1 cut(s) | 1379 |
| BspACI | CCGC | 3 cut(s) | 193, 928, 1137 |
| BspANI | GGCC | 8 cut(s) | 931, 988, 1024, 1136, 1221, 1375, 1548, 1872 |
| BspCNI | CTCAG | 8 cut(s) | 535, 643, 982, 1078, 1268, 1291, 1447, 1483 |
| BspDI | ATCGAT | 1 cut(s) | 1896 |
| BspFNI | CGCG | 1 cut(s) | 195 |
| BspHI | TCATGA | 1 cut(s) | 37 |
| BspLI | GGNNCC | 2 cut(s) | 378, 1563 |
| BspMI | ACCTGC | 1 cut(s) | 1412 |
| BspPI | GGATC | 2 cut(s) | 903, 2021 |
| BspQI | GCTCTTC | 3 cut(s) | 17, 1060, 1317 |
| BspT104I | TTCGAA | 1 cut(s) | 14 |
| BsrDI | GCAATG | 4 cut(s) | 468, 513, 811, 1516 |
| BsrGI | TGTACA | 1 cut(s) | 1282 |
| BsrI | ACTGG | 3 cut(s) | 813, 1422, 1873 |
| BssECI | CCNNGG | 1 cut(s) | 1379 |
| BssMI | GATC | 7 cut(s) | 34, 72, 706, 887, 895, 942, 2026 |
| BssNI | GRCGYC | 2 cut(s) | 231, 416 |
| BssT1I | CCWWGG | 1 cut(s) | 1379 |
| Bst2UI | CCWGG | 3 cut(s) | 985, 1192, 2031 |
| Bst4CI | ACNGT | 1 cut(s) | 240 |
| Bst6I | CTCTTC | 5 cut(s) | 17, 63, 219, 1060, 1317 |
| BstACI | GRCGYC | 2 cut(s) | 231, 416 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 338 |
| BstAUI | TGTACA | 1 cut(s) | 1282 |
| BstBI | TTCGAA | 1 cut(s) | 14 |
| BstC8I | GCNNGC | 2 cut(s) | 334, 1925 |
| BstDSI | CCRYGG | 1 cut(s) | 1379 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1800 |
| BstF5I | GGATG | 4 cut(s) | 782, 1071, 1351, 1902 |
| BstFNI | CGCG | 1 cut(s) | 195 |
| BstHHI | GCGC | 1 cut(s) | 2014 |
| BstKTI | GATC | 7 cut(s) | 37, 75, 709, 890, 898, 945, 2029 |
| BstMAI | GTCTC | 2 cut(s) | 242, 1814 |
| BstMBI | GATC | 7 cut(s) | 34, 72, 706, 887, 895, 942, 2026 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 318, 338, 934, 1772, 1888 |
| BstNI | CCWGG | 3 cut(s) | 985, 1192, 2031 |
| BstNSI | RCATGY | 1 cut(s) | 53 |
| BstSCI | CCNGG | 3 cut(s) | 983, 1190, 2029 |
| BstSFI | CTRYAG | 2 cut(s) | 990, 1815 |
| BstUI | CGCG | 1 cut(s) | 195 |
| BstV1I | GCAGC | 2 cut(s) | 39, 1932 |
| BstX2I | RGATCY | 2 cut(s) | 72, 706 |
| BstYI | RGATCY | 2 cut(s) | 72, 706 |
| Bsu15I | ATCGAT | 1 cut(s) | 1896 |
| BsuI | GTATCC | 3 cut(s) | 577, 1325, 1378 |
| BsuRI | GGCC | 8 cut(s) | 931, 988, 1024, 1136, 1221, 1375, 1548, 1872 |
| BsuTUI | ATCGAT | 1 cut(s) | 1896 |
| BtgI | CCRYGG | 1 cut(s) | 1379 |
| BtsCI | GGATG | 4 cut(s) | 782, 1071, 1351, 1902 |
| BtsI | GCAGTG | 2 cut(s) | 343, 2029 |
| BtsIMutI | CAGTG | 5 cut(s) | 6, 343, 1429, 1604, 2029 |
| BveI | ACCTGC | 1 cut(s) | 1412 |
| Cac8I | GCNNGC | 2 cut(s) | 334, 1925 |
| CaiI | CAGNNNCTG | 1 cut(s) | 287 |
| CciI | TCATGA | 1 cut(s) | 37 |
| CfoI | GCGC | 1 cut(s) | 2014 |
| Cfr13I | GGNCC | 2 cut(s) | 1194, 1562 |
| ClaI | ATCGAT | 1 cut(s) | 1896 |
| CseI | GACGC | 4 cut(s) | 184, 239, 405, 798 |
| Csp6I | GTAC | 4 cut(s) | 59, 1216, 1283, 1717 |
| CviAII | CATG | 7 cut(s) | 38, 50, 101, 613, 1062, 1380, 1983 |
| CviQI | GTAC | 4 cut(s) | 59, 1216, 1283, 1717 |
| DpnI | GATC | 7 cut(s) | 36, 74, 708, 889, 897, 944, 2028 |
| DpnII | GATC | 7 cut(s) | 34, 72, 706, 887, 895, 942, 2026 |
| DraI | TTTAAA | 1 cut(s) | 1707 |
| EaeI | YGGCCR | 4 cut(s) | 1134, 1219, 1546, 1870 |
| Eam1104I | CTCTTC | 5 cut(s) | 17, 63, 219, 1060, 1317 |
| EarI | CTCTTC | 5 cut(s) | 17, 63, 219, 1060, 1317 |
| Ecl136II | GAGCTC | 1 cut(s) | 695 |
| Eco130I | CCWWGG | 1 cut(s) | 1379 |
| Eco147I | AGGCCT | 1 cut(s) | 988 |
| Eco24I | GRGCYC | 1 cut(s) | 697 |
| Eco32I | GATATC | 1 cut(s) | 528 |
| Eco47I | GGWCC | 2 cut(s) | 1194, 1562 |
| Eco53kI | GAGCTC | 1 cut(s) | 695 |
| Eco57I | CTGAAG | 2 cut(s) | 1100, 1977 |
| Eco88I | CYCGRG | 1 cut(s) | 344 |
| EcoICRI | GAGCTC | 1 cut(s) | 695 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1800 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1562 |
| EcoRII | CCWGG | 3 cut(s) | 983, 1190, 2029 |
| EcoRV | GATATC | 1 cut(s) | 528 |
| EcoT14I | CCWWGG | 1 cut(s) | 1379 |
| EcoT22I | ATGCAT | 1 cut(s) | 106 |
| EcoT38I | GRGCYC | 1 cut(s) | 697 |
| ErhI | CCWWGG | 1 cut(s) | 1379 |
| FaeI | CATG | 7 cut(s) | 41, 53, 104, 616, 1065, 1383, 1986 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 404, 436, 1636, 1668, 1652, 1684 |
| FaqI | GGGAC | 1 cut(s) | 175 |
| FatI | CATG | 7 cut(s) | 37, 49, 100, 612, 1061, 1379, 1982 |
| FauI | CCCGC | 1 cut(s) | 200 |
| FauNDI | CATATG | 3 cut(s) | 835, 1183, 1357 |
| FblI | GTMKAC | 2 cut(s) | 198, 1080 |
| Fnu4HI | GCNGC | 4 cut(s) | 28, 929, 1137, 1921 |
| FokI | GGATG | 4 cut(s) | 769, 1078, 1358, 1889 |
| FriOI | GRGCYC | 1 cut(s) | 697 |
| Fsp4HI | GCNGC | 4 cut(s) | 28, 929, 1137, 1921 |
| FspBI | CTAG | 3 cut(s) | 354, 441, 975 |
| FspI | TGCGCA | 1 cut(s) | 2013 |
| GlaI | GCGC | 1 cut(s) | 2013 |
| GluI | GCNGC | 4 cut(s) | 28, 929, 1137, 1921 |
| GsuI | CTGGAG | 1 cut(s) | 711 |
| HaeIII | GGCC | 8 cut(s) | 931, 988, 1024, 1136, 1221, 1375, 1548, 1872 |
| HgaI | GACGC | 4 cut(s) | 184, 239, 405, 798 |
| HhaI | GCGC | 1 cut(s) | 2014 |
| Hin1I | GRCGYC | 2 cut(s) | 231, 416 |
| Hin1II | CATG | 7 cut(s) | 41, 53, 104, 616, 1065, 1383, 1986 |
| Hin6I | GCGC | 1 cut(s) | 2012 |
| HinP1I | GCGC | 1 cut(s) | 2012 |
| HincII | GTYRAC | 1 cut(s) | 199 |
| HindII | GTYRAC | 1 cut(s) | 199 |
| HindIII | AAGCTT | 2 cut(s) | 1784, 1925 |
| HphI | GGTGA | 5 cut(s) | 87, 233, 488, 1479, 1637 |
| Hpy166II | GTNNAC | 4 cut(s) | 199, 1081, 1126, 1285 |
| Hpy8I | GTNNAC | 4 cut(s) | 199, 1081, 1126, 1285 |
| Hpy99I | CGWCG | 1 cut(s) | 200 |
| HpyAV | CCTTC | 5 cut(s) | 1263, 1268, 1520, 1718, 1833 |
| HpyCH4III | ACNGT | 1 cut(s) | 240 |
| HpyCH4IV | ACGT | 1 cut(s) | 2077 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 318, 338, 934, 1772, 1888 |
| HpySE526I | ACGT | 1 cut(s) | 2077 |
| Hsp92I | GRCGYC | 2 cut(s) | 231, 416 |
| Hsp92II | CATG | 7 cut(s) | 41, 53, 104, 616, 1065, 1383, 1986 |
| HspAI | GCGC | 1 cut(s) | 2012 |
| Kzo9I | GATC | 7 cut(s) | 34, 72, 706, 887, 895, 942, 2026 |
| LguI | GCTCTTC | 3 cut(s) | 17, 1060, 1317 |
| LmnI | GCTCC | 6 cut(s) | 35, 147, 692, 700, 1763, 1888 |
| Lsp1109I | GCAGC | 2 cut(s) | 39, 1932 |
| LweI | GCATC | 7 cut(s) | 121, 319, 472, 791, 839, 1336, 1416 |
| MaeI | CTAG | 3 cut(s) | 354, 441, 975 |
| MaeII | ACGT | 1 cut(s) | 2077 |
| MaeIII | GTNAC | 3 cut(s) | 724, 899, 1442 |
| MalI | GATC | 7 cut(s) | 36, 74, 708, 889, 897, 944, 2028 |
| MboI | GATC | 7 cut(s) | 34, 72, 706, 887, 895, 942, 2026 |
| MfeI | CAATTG | 4 cut(s) | 54, 672, 720, 1397 |
| MflI | RGATCY | 2 cut(s) | 72, 706 |
| MhlI | GDGCHC | 2 cut(s) | 343, 697 |
| MlsI | TGGCCA | 1 cut(s) | 1872 |
| MluNI | TGGCCA | 1 cut(s) | 1872 |
| MmeI | TCCRAC | 3 cut(s) | 225, 810, 1866 |
| Mox20I | TGGCCA | 1 cut(s) | 1872 |
| Mph1103I | ATGCAT | 1 cut(s) | 106 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1462, 1509 |
| MscI | TGGCCA | 1 cut(s) | 1872 |
| MseI | TTAA | 4 cut(s) | 765, 1529, 1706, 1730 |
| Msp20I | TGGCCA | 1 cut(s) | 1872 |
| MspA1I | CMGCKG | 1 cut(s) | 1438 |
| MspR9I | CCNGG | 3 cut(s) | 985, 1192, 2031 |
| MunI | CAATTG | 4 cut(s) | 54, 672, 720, 1397 |
| Mva1269I | GAATGC | 3 cut(s) | 104, 1485, 1791 |
| MvaI | CCWGG | 3 cut(s) | 985, 1192, 2031 |
| MvnI | CGCG | 1 cut(s) | 195 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 318, 338, 934, 1772, 1888 |
| NcoI | CCATGG | 1 cut(s) | 1379 |
| NdeI | CATATG | 3 cut(s) | 835, 1183, 1357 |
| NdeII | GATC | 7 cut(s) | 34, 72, 706, 887, 895, 942, 2026 |
| NlaIII | CATG | 7 cut(s) | 41, 53, 104, 616, 1065, 1383, 1986 |
| NlaIV | GGNNCC | 2 cut(s) | 378, 1563 |
| NmuCI | GTSAC | 2 cut(s) | 899, 1442 |
| NsbI | TGCGCA | 1 cut(s) | 2013 |
| NsiI | ATGCAT | 1 cut(s) | 106 |
| NspI | RCATGY | 1 cut(s) | 53 |
| NspV | TTCGAA | 1 cut(s) | 14 |
| PaeR7I | CTCGAG | 1 cut(s) | 344 |
| PagI | TCATGA | 1 cut(s) | 37 |
| PceI | AGGCCT | 1 cut(s) | 988 |
| PciSI | GCTCTTC | 3 cut(s) | 17, 1060, 1317 |
| PctI | GAATGC | 3 cut(s) | 104, 1485, 1791 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1462, 1509 |
| PkrI | GCNGC | 4 cut(s) | 29, 930, 1138, 1922 |
| PpuMI | RGGWCCY | 1 cut(s) | 1562 |
| Psp124BI | GAGCTC | 1 cut(s) | 697 |
| Psp5II | RGGWCCY | 1 cut(s) | 1562 |
| Psp6I | CCWGG | 3 cut(s) | 983, 1190, 2029 |
| PspGI | CCWGG | 3 cut(s) | 983, 1190, 2029 |
| PspN4I | GGNNCC | 2 cut(s) | 378, 1563 |
| PspPI | GGNCC | 2 cut(s) | 1194, 1562 |
| PspPPI | RGGWCCY | 1 cut(s) | 1562 |
| PstNI | CAGNNNCTG | 1 cut(s) | 287 |
| PsuI | RGATCY | 2 cut(s) | 72, 706 |
| PvuII | CAGCTG | 1 cut(s) | 1438 |
| RsaI | GTAC | 4 cut(s) | 60, 1217, 1284, 1718 |
| RsaNI | GTAC | 4 cut(s) | 59, 1216, 1283, 1717 |
| SacI | GAGCTC | 1 cut(s) | 697 |
| SalI | GTCGAC | 1 cut(s) | 197 |
| SapI | GCTCTTC | 3 cut(s) | 17, 1060, 1317 |
| SaqAI | TTAA | 4 cut(s) | 765, 1529, 1706, 1730 |
| SatI | GCNGC | 4 cut(s) | 28, 929, 1137, 1921 |
| Sau3AI | GATC | 7 cut(s) | 34, 72, 706, 887, 895, 942, 2026 |
| Sau96I | GGNCC | 2 cut(s) | 1194, 1562 |
| ScrFI | CCNGG | 3 cut(s) | 985, 1192, 2031 |
| SduI | GDGCHC | 2 cut(s) | 343, 697 |
| SfaNI | GCATC | 7 cut(s) | 121, 319, 472, 791, 839, 1336, 1416 |
| SfcI | CTRYAG | 2 cut(s) | 990, 1815 |
| Sfr274I | CTCGAG | 1 cut(s) | 344 |
| SfuI | TTCGAA | 1 cut(s) | 14 |
| SinI | GGWCC | 2 cut(s) | 1194, 1562 |
| SlaI | CTCGAG | 1 cut(s) | 344 |
| SmlI | CTYRAG | 3 cut(s) | 344, 539, 1658 |
| SmoI | CTYRAG | 3 cut(s) | 344, 539, 1658 |
| SseBI | AGGCCT | 1 cut(s) | 988 |
| SsiI | CCGC | 3 cut(s) | 193, 928, 1137 |
| SspMI | CTAG | 3 cut(s) | 354, 441, 975 |
| SstI | GAGCTC | 1 cut(s) | 697 |
| StuI | AGGCCT | 1 cut(s) | 988 |
| StyD4I | CCNGG | 3 cut(s) | 983, 1190, 2029 |
| StyI | CCWWGG | 1 cut(s) | 1379 |
| TaaI | ACNGT | 1 cut(s) | 240 |
| TaiI | ACGT | 1 cut(s) | 2080 |
| TaqI | TCGA | 5 cut(s) | 14, 198, 345, 886, 1896 |
| TatI | WGTACW | 1 cut(s) | 1282 |
| TauI | GCSGC | 2 cut(s) | 931, 1139 |
| Tru1I | TTAA | 4 cut(s) | 765, 1529, 1706, 1730 |
| Tru9I | TTAA | 4 cut(s) | 765, 1529, 1706, 1730 |
| TscAI | CASTG | 5 cut(s) | 13, 343, 1429, 1611, 2029 |
| TseFI | GTSAC | 2 cut(s) | 899, 1442 |
| TseI | GCWGC | 2 cut(s) | 27, 1920 |
| Tsp45I | GTSAC | 2 cut(s) | 899, 1442 |
| TspDTI | ATGAA | 8 cut(s) | 54, 129, 446, 462, 479, 609, 1502, 1955 |
| TspRI | CASTG | 5 cut(s) | 13, 343, 1429, 1611, 2029 |
| VpaK11BI | GGWCC | 2 cut(s) | 1194, 1562 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1800 |
| XapI | RAATTY | 6 cut(s) | 433, 735, 863, 958, 1366, 2004 |
| XbaI | TCTAGA | 1 cut(s) | 440 |
| XceI | RCATGY | 1 cut(s) | 53 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1188 |
| XhoI | CTCGAG | 1 cut(s) | 344 |
| XmiI | GTMKAC | 2 cut(s) | 198, 1080 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1462, 1509 |
| XspI | CTAG | 3 cut(s) | 354, 441, 975 |
| Zsp2I | ATGCAT | 1 cut(s) | 106 |