Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005591

Physical Location & Seq

Genomic Coordinates Forward (+)

9363794 .. 9365762

Gene Structure 1969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGAAAGCTTCGGTGGTGCTGGGTTTTCGCCTGGAGGTTGCATTGTCAGGAAGAAGAGGAGTATCGTATCACATAAACCTCGGTTAAATCCACCGACATTTTCACTCAGCTATAATATCCCTATTGGCAAAGGAACCATTGATGGGAATCAGAATAATAAGAAGAAAATAGTGCATCCTGATGGATTGGGAAGTAAGAACAACCCGAAGAAGTTAAAGCTTAAGTTTGGAGGTGTTACTCGTACACTCAACACCAAGTATATAGCAGATGTTGGCAATGGTGTTGGCTCGTCTGCTGCTAAATCTTCAAGCTCTTTAGATGCCTTCACACCCCAACTGAATCCCCTTGCTCAGGATGATGCAGGTGGAGGTGGGGTCAATGAGCCAGTTCGGAAAAGCAAGCGGGCTCCTAAGAGAAGCGCCTTGGATGCTGGATTTAATGAAGATGACGATGAAGATGAAGAAATCCGATTCCTTGGAAGACTAAGTGCATCTAAGGTTGCTCGTTCAGAGAGAATTCAAATGGACGTTCGCTTTCATGGAGATGATGGCGGAGGGTATAAGCCATCAAGGCTAGGAACAGCTAGTAAATATAGGTCAAGATCAGAAAAAATGCACGAGGATAAAGACTATTTGGGAGAAGACGATGAAGAAGAATTAACATCTGATGATGAACCTGAACCAAATGGGAAGAAGCTGAAAACAGGATCTCTTAGTCTACTTCTAGAAGGGCGGAAAGAATCAACCCTCACTACACGTAACCGGGCCTTCCAGCCTGGAAAAGATATTTTACCTGGTTCAGGTTTTCTTGACATTGCAAGTGATTTGCTTTCTGTCCCATCTAAAAGCAAGAAGGATAAACTGTCTGAAGTGGAACGGCAATTAAAGAAAGCTGAGGCTGCACAGAGACGGAAAGTGAAGTTAGAGAATGCAGCTAGGGAAGCTGAGGCTGGGGCAATCAGAAGAATACTGGGTCAAGATTCCAAGAAGAAGAAGGAAGAAAAACTGAAGCAGCAAAGGGACGAATTGAATAAGGGGAGGACCGGCTGTCCTGTCACACTGGCACCAAACACTGTCCGATGGGTTGTCGGTCCTAATGGAACCACCGTTACATTTTCTGATGATATTGGTCTGCCTAGTATTTTCAGTCCAGTGCCTTGCAGCTATCCTCCCCCACGCGAAAAATGTGCGGGTCCAAATTGCACGAATGCATACAAGTATCGGGATTCCAAGTCGAAGCTTCCCCTGTGCAGTCTCCAGTGTTACAGGGCAATACACGAAAAGATGCAGCCTCTAATTACCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAPA-1 zf-HIT

Protein Analysis

436

Amino Acids

47.53

Weight (kDa)

9.48

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAPA-1	PF04795	292 - 375	1.5e-18	PAPA-1-like conserved region
zf-HIT	PF04438	392 - 423	8e-07	HIT zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06660
fragaria_vesca	FvH4_4g19561 FvH4_4g19561 FvH4_4g19561 FvH4_4g19561 FvH4_4g19561
malus_domestica	MD13G1155600.v1.1 MD16G1155300.v1.1
prunus_persica	Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1 Prupe.1G118900_v2.0.a1
pyrus_communis	pycom13g13260
rosa_chinensis	RchiOBHm_Chr4g0424821
rosa_laevigata	RLG00000007419
rosa_multiflora	Rmu_sc0003608.1_g000022 Rmu_sc0007418.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367040
rosa_rugosa	Rorug04G0199300
rosa_samantha	Rh4AG257100 Rh4BG262400 Rh4CG273400 Rh4DG258200
rosa_wichuraiana	Rw4G022180 Rw4G024040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	1063
AccI	GTMKAC	1 cut(s)	718
AccII	CGCG	1 cut(s)	1179
AciI	CCGC	4 cut(s)	403, 552, 733, 1190
AclWI	GGATC	1 cut(s)	715
AcsI	RAATTY	1 cut(s)	516
AcuI	CTGAAG	2 cut(s)	888, 1028
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	3 cut(s)	144, 352, 800
AflII	CTTAAG	1 cut(s)	221
AflIII	ACRYGT	1 cut(s)	755
AgsI	TTSAA	3 cut(s)	309, 521, 1030
AhdI	GACNNNNNGTC	1 cut(s)	1047
AjnI	CCWGG	3 cut(s)	31, 775, 793
Alw26I	GTCTC	2 cut(s)	901, 1259
AlwI	GGATC	1 cut(s)	715
AoxI	GGCC	1 cut(s)	765
ApeKI	GCWGC	6 cut(s)	296, 899, 932, 1012, 1161, 1288
ApoI	RAATTY	1 cut(s)	516
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	4 cut(s)	765, 1041, 1091, 1193
AsuC2I	CCSGG	1 cut(s)	764
AvaII	GGWCC	3 cut(s)	1041, 1091, 1193
BanI	GGYRCC	1 cut(s)	1063
BanII	GRGCYC	1 cut(s)	409
BauI	CACGAG	1 cut(s)	617
BbsI	GAAGAC	2 cut(s)	487, 648
BbvCI	CCTCAGC	2 cut(s)	894, 945
BbvI	GCAGC	6 cut(s)	283, 886, 944, 1024, 1173, 1300
BccI	CCATC	6 cut(s)	137, 176, 542, 574, 847, 1074
BceAI	ACGGC	1 cut(s)	893
BcgI	CGANNNNNNTGC	2 cut(s)	1169, 1203
BciT130I	CCWGG	3 cut(s)	33, 777, 795
BcnI	CCSGG	1 cut(s)	764
BcoDI	GTCTC	2 cut(s)	901, 1259
BfaI	CTAG	5 cut(s)	575, 585, 725, 936, 1137
BfoI	RGCGCY	1 cut(s)	423
BfrI	CTTAAG	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	353
BglI	GCCNNNNNGGC	1 cut(s)	571
BisI	GCNGC	6 cut(s)	297, 900, 933, 1013, 1162, 1289
BlsI	GCNGC	6 cut(s)	298, 901, 934, 1014, 1163, 1290
Bme1390I	CCNGG	4 cut(s)	33, 764, 777, 795
Bme18I	GGWCC	3 cut(s)	1041, 1091, 1193
BmeRI	GACNNNNNGTC	1 cut(s)	1047
BmgT120I	GGNCC	4 cut(s)	765, 1041, 1091, 1193
BmiI	GGNNCC	5 cut(s)	136, 408, 1065, 1102, 1194
BmrFI	CCNGG	4 cut(s)	33, 764, 777, 795
BmrI	ACTGGG	1 cut(s)	980
BmsI	GCATC	6 cut(s)	184, 310, 349, 418, 500, 1275
BmuI	ACTGGG	1 cut(s)	980
BpiI	GAAGAC	2 cut(s)	487, 648
BpmI	CTGGAG	2 cut(s)	54, 1241
Bpu10I	CCTNAGC	3 cut(s)	351, 894, 945
BpuMI	CCSGG	1 cut(s)	764
BsaAI	YACGTR	1 cut(s)	758
BsaBI	GATNNNNATC	1 cut(s)	147
BsaJI	CCNNGG	3 cut(s)	80, 423, 475
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 352, 800
Bse118I	RCCGGY	1 cut(s)	1043
Bse1I	ACTGG	5 cut(s)	386, 975, 1065, 1151, 1258
Bse3DI	GCAATG	2 cut(s)	283, 813
Bse8I	GATNNNNATC	1 cut(s)	147
BseBI	CCWGG	3 cut(s)	33, 777, 795
BseDI	CCNNGG	3 cut(s)	80, 423, 475
BseGI	GGATG	3 cut(s)	175, 361, 433
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	3 cut(s)	144, 352, 800
BseMI	GCAATG	2 cut(s)	283, 813
BseMII	CTCAG	4 cut(s)	121, 365, 885, 936
BseNI	ACTGG	5 cut(s)	386, 975, 1065, 1151, 1258
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	6 cut(s)	283, 886, 944, 1024, 1173, 1300
BseYI	CCCAGC	2 cut(s)	20, 950
BsgI	GTGCAG	2 cut(s)	885, 1270
Bsh1236I	CGCG	1 cut(s)	1179
BshFI	GGCC	1 cut(s)	767
BshNI	GGYRCC	1 cut(s)	1063
BsiSI	CCGG	2 cut(s)	763, 1044
BslFI	GGGAC	2 cut(s)	821, 1034
BslI	CCNNNNNNNGG	3 cut(s)	144, 352, 800
BsmAI	GTCTC	2 cut(s)	901, 1259
BsmBI	CGTCTC	1 cut(s)	901
BsmFI	GGGAC	2 cut(s)	821, 1034
BsmI	GAATGC	2 cut(s)	934, 1213
BsnI	GGCC	1 cut(s)	767
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	2 cut(s)	602, 707
BspACI	CCGC	4 cut(s)	403, 552, 733, 1190
BspANI	GGCC	1 cut(s)	767
BspCNI	CTCAG	4 cut(s)	120, 364, 886, 937
BspFNI	CGCG	1 cut(s)	1179
BspLI	GGNNCC	5 cut(s)	136, 408, 1065, 1102, 1194
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	715
BspT107I	GGYRCC	1 cut(s)	1063
BspTI	CTTAAG	1 cut(s)	221
BsrDI	GCAATG	2 cut(s)	283, 813
BsrFI	RCCGGY	1 cut(s)	1043
BsrI	ACTGG	5 cut(s)	386, 975, 1065, 1151, 1258
BssAI	RCCGGY	1 cut(s)	1043
BssECI	CCNNGG	3 cut(s)	80, 423, 475
BssMI	GATC	2 cut(s)	602, 707
BssSI	CACGAG	1 cut(s)	617
BssT1I	CCWWGG	2 cut(s)	423, 475
Bst2BI	CACGAG	1 cut(s)	617
Bst2UI	CCWGG	3 cut(s)	33, 777, 795
Bst4CI	ACNGT	3 cut(s)	864, 1075, 1108
Bst6I	CTCTTC	1 cut(s)	50
BstAFI	CTTAAG	1 cut(s)	221
BstBAI	YACGTR	1 cut(s)	758
BstC8I	GCNNGC	2 cut(s)	401, 405
BstDEI	CTNAG	8 cut(s)	107, 351, 411, 485, 495, 713, 894, 945
BstENI	CCTNNNNNAGG	2 cut(s)	350, 798
BstF5I	GGATG	3 cut(s)	175, 361, 433
BstFNI	CGCG	1 cut(s)	1179
BstH2I	RGCGCY	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	2 cut(s)	605, 710
BstMAI	GTCTC	2 cut(s)	901, 1259
BstMBI	GATC	2 cut(s)	602, 707
BstMWI	GCNNNNNNNGC	4 cut(s)	428, 571, 899, 941
BstNI	CCWGG	3 cut(s)	33, 777, 795
BstSCI	CCNGG	4 cut(s)	31, 762, 775, 793
BstUI	CGCG	1 cut(s)	1179
BstV1I	GCAGC	6 cut(s)	283, 886, 944, 1024, 1173, 1300
BstV2I	GAAGAC	2 cut(s)	487, 648
BstX2I	RGATCY	1 cut(s)	707
BstYI	RGATCY	1 cut(s)	707
BsuRI	GGCC	1 cut(s)	767
BtsCI	GGATG	3 cut(s)	175, 361, 433
BtsIMutI	CAGTG	4 cut(s)	1058, 1071, 1158, 1265
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	2 cut(s)	401, 405
CfoI	GCGC	1 cut(s)	422
Cfr10I	RCCGGY	1 cut(s)	1043
Cfr13I	GGNCC	4 cut(s)	765, 1041, 1091, 1193
CsiI	ACCWGGT	1 cut(s)	793
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	1 cut(s)	539
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	8 cut(s)	107, 351, 411, 485, 495, 713, 894, 945
DpnI	GATC	2 cut(s)	604, 709
DpnII	GATC	2 cut(s)	602, 707
DriI	GACNNNNNGTC	1 cut(s)	1047
Eam1104I	CTCTTC	1 cut(s)	50
Eam1105I	GACNNNNNGTC	1 cut(s)	1047
EarI	CTCTTC	1 cut(s)	50
EciI	GGCGGA	2 cut(s)	567, 748
Eco130I	CCWWGG	2 cut(s)	423, 475
Eco24I	GRGCYC	1 cut(s)	409
Eco47I	GGWCC	3 cut(s)	1041, 1091, 1193
Eco57I	CTGAAG	2 cut(s)	888, 1028
EcoNI	CCTNNNNNAGG	2 cut(s)	350, 798
EcoRI	GAATTC	1 cut(s)	516
EcoRII	CCWGG	3 cut(s)	31, 775, 793
EcoT14I	CCWWGG	2 cut(s)	423, 475
EcoT22I	ATGCAT	1 cut(s)	1213
EcoT38I	GRGCYC	1 cut(s)	409
ErhI	CCWWGG	2 cut(s)	423, 475
Esp3I	CGTCTC	1 cut(s)	901
FaeI	CATG	1 cut(s)	542
FaiI	YATR	8 cut(s)	75, 114, 261, 263, 540, 561, 594, 1213
FaqI	GGGAC	2 cut(s)	821, 1034
FatI	CATG	1 cut(s)	538
FauI	CCCGC	2 cut(s)	396, 1183
FblI	GTMKAC	1 cut(s)	718
Fnu4HI	GCNGC	6 cut(s)	297, 900, 933, 1013, 1162, 1289
FokI	GGATG	3 cut(s)	162, 368, 440
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	6 cut(s)	297, 900, 933, 1013, 1162, 1289
FspBI	CTAG	5 cut(s)	575, 585, 725, 936, 1137
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	6 cut(s)	297, 900, 933, 1013, 1162, 1289
GsaI	CCCAGC	2 cut(s)	24, 954
GsuI	CTGGAG	2 cut(s)	54, 1241
HaeII	RGCGCY	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	767
HapII	CCGG	2 cut(s)	763, 1044
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	1 cut(s)	542
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HindIII	AAGCTT	3 cut(s)	7, 218, 1238
HinfI	GANTC	6 cut(s)	148, 340, 471, 740, 980, 1226
HpaII	CCGG	2 cut(s)	763, 1044
Hpy166II	GTNNAC	2 cut(s)	245, 719
Hpy188III	TCNNGA	8 cut(s)	49, 179, 353, 600, 725, 809, 977, 1223
Hpy8I	GTNNAC	2 cut(s)	245, 719
HpyAV	CCTTC	5 cut(s)	334, 722, 778, 847, 988
HpyCH4III	ACNGT	3 cut(s)	864, 1075, 1108
HpyCH4IV	ACGT	2 cut(s)	528, 757
HpyF10VI	GCNNNNNNNGC	4 cut(s)	428, 571, 899, 941
HpyF3I	CTNAG	8 cut(s)	107, 351, 411, 485, 495, 713, 894, 945
HpySE526I	ACGT	2 cut(s)	528, 757
Hsp92II	CATG	1 cut(s)	542
HspAI	GCGC	1 cut(s)	420
Kzo9I	GATC	2 cut(s)	602, 707
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	6 cut(s)	283, 886, 944, 1024, 1173, 1300
LweI	GCATC	6 cut(s)	184, 310, 349, 418, 500, 1275
MabI	ACCWGGT	1 cut(s)	793
MaeI	CTAG	5 cut(s)	575, 585, 725, 936, 1137
MaeII	ACGT	2 cut(s)	528, 757
MaeIII	GTNAC	5 cut(s)	235, 758, 1054, 1108, 1262
MalI	GATC	2 cut(s)	604, 709
MboI	GATC	2 cut(s)	602, 707
MflI	RGATCY	1 cut(s)	707
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	6 cut(s)	516, 656, 881, 1025, 1198, 1296
Mph1103I	ATGCAT	1 cut(s)	1213
MseI	TTAA	6 cut(s)	86, 215, 222, 438, 659, 884
MslI	CAYNNNNRTG	2 cut(s)	180, 543
MspCI	CTTAAG	1 cut(s)	221
MspI	CCGG	2 cut(s)	763, 1044
MspR9I	CCNGG	4 cut(s)	33, 764, 777, 795
Mva1269I	GAATGC	2 cut(s)	934, 1213
MvaI	CCWGG	3 cut(s)	33, 777, 795
MvnI	CGCG	1 cut(s)	1179
MwoI	GCNNNNNNNGC	4 cut(s)	428, 571, 899, 941
NciI	CCSGG	1 cut(s)	764
NdeII	GATC	2 cut(s)	602, 707
NlaIII	CATG	1 cut(s)	542
NlaIV	GGNNCC	5 cut(s)	136, 408, 1065, 1102, 1194
NmuCI	GTSAC	1 cut(s)	1054
NsiI	ATGCAT	1 cut(s)	1213
PaqCI	CACCTGC	1 cut(s)	353
PctI	GAATGC	2 cut(s)	934, 1213
PfeI	GAWTC	6 cut(s)	148, 340, 471, 740, 980, 1226
PkrI	GCNGC	6 cut(s)	298, 901, 934, 1014, 1163, 1290
Ppu21I	YACGTR	1 cut(s)	758
Psp6I	CCWGG	3 cut(s)	31, 775, 793
PspFI	CCCAGC	2 cut(s)	20, 950
PspGI	CCWGG	3 cut(s)	31, 775, 793
PspN4I	GGNNCC	5 cut(s)	136, 408, 1065, 1102, 1194
PspPI	GGNCC	4 cut(s)	765, 1041, 1091, 1193
PsrI	GAACNNNNNNTAC	2 cut(s)	1093, 1125
PsuI	RGATCY	1 cut(s)	707
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	2 cut(s)	180, 543
SaqAI	TTAA	6 cut(s)	86, 215, 222, 438, 659, 884
SatI	GCNGC	6 cut(s)	297, 900, 933, 1013, 1162, 1289
Sau3AI	GATC	2 cut(s)	602, 707
Sau96I	GGNCC	4 cut(s)	765, 1041, 1091, 1193
ScrFI	CCNGG	4 cut(s)	33, 764, 777, 795
SduI	GDGCHC	1 cut(s)	409
SexAI	ACCWGGT	1 cut(s)	793
SfaNI	GCATC	6 cut(s)	184, 310, 349, 418, 500, 1275
SinI	GGWCC	3 cut(s)	1041, 1091, 1193
SmiMI	CAYNNNNRTG	2 cut(s)	180, 543
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	6 cut(s)	516, 656, 881, 1025, 1198, 1296
SsiI	CCGC	4 cut(s)	403, 552, 733, 1190
SspMI	CTAG	5 cut(s)	575, 585, 725, 936, 1137
StyD4I	CCNGG	4 cut(s)	31, 762, 775, 793
StyI	CCWWGG	2 cut(s)	423, 475
TaaI	ACNGT	3 cut(s)	864, 1075, 1108
TaiI	ACGT	2 cut(s)	531, 760
TaqI	TCGA	1 cut(s)	1235
TaqII	GACCGA	1 cut(s)	1079
TasI	AATT	6 cut(s)	516, 656, 881, 1025, 1198, 1296
TfiI	GAWTC	6 cut(s)	148, 340, 471, 740, 980, 1226
Tru1I	TTAA	6 cut(s)	86, 215, 222, 438, 659, 884
Tru9I	TTAA	6 cut(s)	86, 215, 222, 438, 659, 884
TscAI	CASTG	4 cut(s)	1065, 1078, 1158, 1265
TseFI	GTSAC	1 cut(s)	1054
TseI	GCWGC	6 cut(s)	296, 899, 932, 1012, 1161, 1288
Tsp45I	GTSAC	1 cut(s)	1054
TspDTI	ATGAA	6 cut(s)	456, 468, 474, 527, 663, 687
TspGWI	ACGGA	1 cut(s)	925
TspRI	CASTG	4 cut(s)	1065, 1078, 1158, 1265
Vha464I	CTTAAG	1 cut(s)	221
VpaK11BI	GGWCC	3 cut(s)	1041, 1091, 1193
XagI	CCTNNNNNAGG	2 cut(s)	350, 798
XapI	RAATTY	1 cut(s)	516
XbaI	TCTAGA	1 cut(s)	724
XmiI	GTMKAC	1 cut(s)	718
XspI	CTAG	5 cut(s)	575, 585, 725, 936, 1137
Zsp2I	ATGCAT	1 cut(s)	1213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.