Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0016308

Physical Location & Seq

Genomic Coordinates Forward (+)

9523646 .. 9526319

Gene Structure 2674 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGAAGAGCACCGTGCTGTGAGAAACTTGGTCTCAAAAGAGGAAAATGGACAGCTGAAGAAGATGAAATCTTGACCAAATACATTCACGCTCATGGAGAAGGTTCTTGGAGATCTTTGCCAAAGAATGCGGGATTGCTGAGGTGTGGGAAGAGTTGCAGACTGAGGTGGATAAATTATCTGAGGGCTGAATTAAAGAGAGGGAACTTCACTGCTGAGGAGGAAGAAACCATTGTTAAGCTACACAGGGCTTTGGGTAATAGGTGGTCCTTGATTGCCGCTCATTTACCAGGAAGAACAGACAATGGAATCAAAAACTACTGGAACTCTCATTTGAGTCGAAAAATCTACAGCTTTATCAAGCTGGGAAACGAACATCTACCCTCCATTCTCAATGATGTGAAGAAGATAACTTCATGCAATAAACGTTGTAAGGGCGCTCGAGCGAGCAGATCTACCATGAACAACAAGAGCAAGAACAAGAACTTGGCCACATTTAACTCAAGAAAATCAGAAGCAAACCGTCAACTTGGAAACCCTAGCCTACCAACTGGCACCATTATTAATCTAGGGCAAGTGGGTAATGAGGACAGCAATTTAAGGGGTTTGGAGTCCTGGGACCCAATAAAGAATAGAGATGGTGAGGCAATAGGAATGTTGGGGATGCAAAGTTCTTGTTTGGACAGTGCAGAAATGATTAATTTGGATCCTTGCGGTGAGCAGAAAAAAAGTGCACAATTATGCCTTGGGAAAAAAGAAAACAATATTACTAGTAGTTCAACTGCAATATATGGAGATAATGACTGTGAAACGGAGGTTTTGGGGACATCTTGTGAATGTGTAGACGCTATGGACCAGAATAATAATATTTTTGAAATTGAAGAGAGAAGAAGTACAGGTATTTGGAGCTCATCAAATGCTGCTGAGAGTGGTGGCGGTGGTGGTGGTGGAGAGTTGTACTCCTTCGCTTCATCAATGAATTCAGGCTTTGATGATGAATGGCTTAATTGGGGTTGGGCAGGGGGTGGCCTTCAATGTCACAATGGTGAATTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

353

Amino Acids

38.76

Weight (kDa)

7.9

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.4e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	7.8e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 117	2.3e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016308)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19310
malus_domestica	MD13G1158000.v1.1 MD16G1158800.v1.1
prunus_persica	Prupe.1G125300_v2.0.a1
pyrus_communis	pycom13g13510
rosa_chinensis	RchiOBHm_Chr4g0424331
rosa_laevigata	RLG00000007485
rosa_multiflora	Rmu_sc0002260.1_g000004
rosa_roxburghii	Rroxscaffold_5G00366280
rosa_rugosa	Rorug04G0195900
rosa_samantha	Rh4AG252800 Rh4BG258200 Rh4CG269100 Rh4DG252600
rosa_wichuraiana	Rw4G021800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	554
AccBSI	CCGCTC	1 cut(s)	281
AccI	GTMKAC	1 cut(s)	843
AciI	CCGC	4 cut(s)	131, 279, 714, 936
AclI	AACGTT	1 cut(s)	427
AclWI	GGATC	2 cut(s)	701, 714
AcoI	YGGCCR	1 cut(s)	489
AcsI	RAATTY	1 cut(s)	979
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	2 cut(s)	895, 959
AgsI	TTSAA	4 cut(s)	780, 875, 881, 1034
AhlI	ACTAGT	1 cut(s)	770
AjnI	CCWGG	2 cut(s)	289, 614
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AleI	CACNNNNGTG	1 cut(s)	1044
AloI	GAACNNNNNNTCC	2 cut(s)	655, 687
AluBI	AGCT	5 cut(s)	56, 241, 354, 364, 909
AluI	AGCT	5 cut(s)	56, 241, 354, 364, 909
Alw21I	GWGCWC	3 cut(s)	13, 736, 911
Alw26I	GTCTC	1 cut(s)	38
Alw44I	GTGCAC	1 cut(s)	732
AlwI	GGATC	2 cut(s)	701, 714
Ama87I	CYCGRG	1 cut(s)	441
AoxI	GGCC	2 cut(s)	489, 1027
ApaLI	GTGCAC	1 cut(s)	732
ApeKI	GCWGC	1 cut(s)	920
ApoI	RAATTY	1 cut(s)	979
AseI	ATTAAT	2 cut(s)	564, 699
AspLEI	GCGC	1 cut(s)	440
AspS9I	GGNCC	3 cut(s)	267, 619, 853
AsuHPI	GGTGA	3 cut(s)	653, 728, 1058
AvaI	CYCGRG	1 cut(s)	441
AvaII	GGWCC	3 cut(s)	267, 619, 853
BaeGI	GKGCMC	1 cut(s)	736
BalI	TGGCCA	1 cut(s)	491
BamHI	GGATCC	1 cut(s)	706
BanI	GGYRCC	1 cut(s)	554
BanII	GRGCYC	1 cut(s)	911
Bbv12I	GWGCWC	3 cut(s)	13, 736, 911
BbvCI	CCTCAGC	2 cut(s)	140, 216
BbvI	GCAGC	1 cut(s)	907
BccI	CCATC	1 cut(s)	632
BciT130I	CCWGG	2 cut(s)	291, 616
BcoDI	GTCTC	1 cut(s)	38
BcuI	ACTAGT	1 cut(s)	770
BfaI	CTAG	3 cut(s)	540, 569, 771
BfmI	CTRYAG	1 cut(s)	349
BfoI	RGCGCY	1 cut(s)	441
BglII	AGATCT	2 cut(s)	113, 452
BisI	GCNGC	2 cut(s)	279, 921
BlsI	GCNGC	2 cut(s)	280, 922
Bme1390I	CCNGG	2 cut(s)	291, 616
Bme18I	GGWCC	3 cut(s)	267, 619, 853
BmeT110I	CYCGRG	1 cut(s)	441
BmgT120I	GGNCC	3 cut(s)	267, 619, 853
BmiI	GGNNCC	4 cut(s)	556, 620, 621, 708
BmrFI	CCNGG	2 cut(s)	291, 616
BmsI	GCATC	1 cut(s)	654
BplI	GAGNNNNNCTC	2 cut(s)	944, 976
Bpu10I	CCTNAGC	2 cut(s)	140, 216
BpuEI	CTTGAG	1 cut(s)	487
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	615, 745
Bse1I	ACTGG	2 cut(s)	326, 556
BseBI	CCWGG	2 cut(s)	291, 616
BseDI	CCNNGG	2 cut(s)	615, 745
BseGI	GGATG	1 cut(s)	669
BseMII	CTCAG	5 cut(s)	131, 155, 173, 207, 915
BseNI	ACTGG	2 cut(s)	326, 556
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	736
BseXI	GCAGC	1 cut(s)	907
BseYI	CCCAGC	1 cut(s)	364
BsgI	GTGCAG	1 cut(s)	708
BshFI	GGCC	2 cut(s)	491, 1029
BshNI	GGYRCC	1 cut(s)	554
BsiHKAI	GWGCWC	3 cut(s)	13, 736, 911
BsiHKCI	CYCGRG	1 cut(s)	441
BslFI	GGGAC	2 cut(s)	632, 838
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	2 cut(s)	632, 838
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	491, 1029
Bso31I	GGTCTC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	441
Bsp1286I	GDGCHC	3 cut(s)	13, 736, 911
Bsp143I	GATC	3 cut(s)	113, 452, 706
BspACI	CCGC	4 cut(s)	131, 279, 714, 936
BspANI	GGCC	2 cut(s)	491, 1029
BspCNI	CTCAG	5 cut(s)	132, 156, 174, 208, 916
BspLI	GGNNCC	4 cut(s)	556, 620, 621, 708
BspPI	GGATC	2 cut(s)	701, 714
BspT107I	GGYRCC	1 cut(s)	554
BspTNI	GGTCTC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	326, 556
BssECI	CCNNGG	2 cut(s)	615, 745
BssMI	GATC	3 cut(s)	113, 452, 706
BssT1I	CCWWGG	1 cut(s)	745
Bst2UI	CCWGG	2 cut(s)	291, 616
Bst4CI	ACNGT	4 cut(s)	15, 524, 686, 806
Bst6I	CTCTTC	2 cut(s)	146, 876
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	5 cut(s)	140, 164, 182, 216, 924
BstF5I	GGATG	1 cut(s)	669
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	3 cut(s)	116, 455, 709
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	3 cut(s)	113, 452, 706
BstNI	CCWGG	2 cut(s)	291, 616
BstSCI	CCNGG	2 cut(s)	289, 614
BstSFI	CTRYAG	1 cut(s)	349
BstSLI	GKGCMC	1 cut(s)	736
BstV1I	GCAGC	1 cut(s)	907
BstX2I	RGATCY	3 cut(s)	113, 452, 706
BstYI	RGATCY	3 cut(s)	113, 452, 706
BsuRI	GGCC	2 cut(s)	491, 1029
BtsCI	GGATG	1 cut(s)	669
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	2 cut(s)	210, 691
Cac8I	GCNNGC	1 cut(s)	448
CfoI	GCGC	1 cut(s)	440
Cfr13I	GGNCC	3 cut(s)	267, 619, 853
CseI	GACGC	1 cut(s)	854
Csp6I	GTAC	2 cut(s)	894, 958
CviAII	CATG	3 cut(s)	95, 417, 460
CviQI	GTAC	2 cut(s)	894, 958
DdeI	CTNAG	5 cut(s)	140, 164, 182, 216, 924
DpnI	GATC	3 cut(s)	115, 454, 708
DpnII	GATC	3 cut(s)	113, 452, 706
EaeI	YGGCCR	1 cut(s)	489
Eam1104I	CTCTTC	2 cut(s)	146, 876
EarI	CTCTTC	2 cut(s)	146, 876
Ecl136II	GAGCTC	1 cut(s)	909
Eco130I	CCWWGG	1 cut(s)	745
Eco24I	GRGCYC	1 cut(s)	911
Eco31I	GGTCTC	1 cut(s)	38
Eco47I	GGWCC	3 cut(s)	267, 619, 853
Eco53kI	GAGCTC	1 cut(s)	909
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	441
EcoICRI	GAGCTC	1 cut(s)	909
EcoO109I	RGGNCCY	1 cut(s)	619
EcoRI	GAATTC	1 cut(s)	979
EcoRII	CCWGG	2 cut(s)	289, 614
EcoT14I	CCWWGG	1 cut(s)	745
EcoT38I	GRGCYC	1 cut(s)	911
ErhI	CCWWGG	1 cut(s)	745
FaeI	CATG	3 cut(s)	98, 420, 463
FaiI	YATR	7 cut(s)	96, 418, 461, 742, 790, 792, 851
FaqI	GGGAC	2 cut(s)	632, 838
FatI	CATG	3 cut(s)	94, 416, 459
FauI	CCCGC	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	843
Fnu4HI	GCNGC	2 cut(s)	279, 921
FokI	GGATG	1 cut(s)	676
FriOI	GRGCYC	1 cut(s)	911
Fsp4HI	GCNGC	2 cut(s)	279, 921
FspBI	CTAG	3 cut(s)	540, 569, 771
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	2 cut(s)	279, 921
GsaI	CCCAGC	1 cut(s)	368
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	491, 1029
HgaI	GACGC	1 cut(s)	854
HhaI	GCGC	1 cut(s)	440
Hin1II	CATG	3 cut(s)	98, 420, 463
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HincII	GTYRAC	1 cut(s)	527
HindII	GTYRAC	1 cut(s)	527
HinfI	GANTC	3 cut(s)	309, 337, 611
HphI	GGTGA	3 cut(s)	653, 728, 1058
Hpy166II	GTNNAC	3 cut(s)	527, 734, 844
Hpy188I	TCNGA	2 cut(s)	183, 514
Hpy188III	TCNNGA	2 cut(s)	73, 504
Hpy8I	GTNNAC	3 cut(s)	527, 734, 844
HpyAV	CCTTC	3 cut(s)	95, 973, 1040
HpyCH4III	ACNGT	4 cut(s)	15, 524, 686, 806
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	6 cut(s)	159, 420, 667, 689, 734, 785
HpyF3I	CTNAG	5 cut(s)	140, 164, 182, 216, 924
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	3 cut(s)	98, 420, 463
HspAI	GCGC	1 cut(s)	438
KflI	GGGWCCC	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	113, 452, 706
LmnI	GCTCC	1 cut(s)	906
Lsp1109I	GCAGC	1 cut(s)	907
LweI	GCATC	1 cut(s)	654
MaeI	CTAG	3 cut(s)	540, 569, 771
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	1 cut(s)	1037
MalI	GATC	3 cut(s)	115, 454, 708
MbiI	CCGCTC	1 cut(s)	281
MboI	GATC	3 cut(s)	113, 452, 706
MflI	RGATCY	3 cut(s)	113, 452, 706
MhlI	GDGCHC	3 cut(s)	13, 736, 911
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	9 cut(s)	175, 191, 595, 700, 737, 876, 979, 1006, 1049
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	2 cut(s)	346, 620
Mox20I	TGGCCA	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	7 cut(s)	194, 237, 498, 564, 599, 699, 1005
MslI	CAYNNNNRTG	3 cut(s)	93, 739, 1044
Msp20I	TGGCCA	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	291, 616
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	2 cut(s)	291, 616
NdeII	GATC	3 cut(s)	113, 452, 706
NlaIII	CATG	3 cut(s)	98, 420, 463
NlaIV	GGNNCC	4 cut(s)	556, 620, 621, 708
NmuCI	GTSAC	1 cut(s)	1037
OliI	CACNNNNGTG	1 cut(s)	1044
PaeR7I	CTCGAG	1 cut(s)	441
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	309
PkrI	GCNGC	2 cut(s)	280, 922
PleI	GAGTC	2 cut(s)	345, 619
PpsI	GAGTC	2 cut(s)	345, 619
PpuMI	RGGWCCY	1 cut(s)	619
PshBI	ATTAAT	2 cut(s)	564, 699
Psp124BI	GAGCTC	1 cut(s)	911
Psp1406I	AACGTT	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	619
Psp6I	CCWGG	2 cut(s)	289, 614
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	2 cut(s)	289, 614
PspN4I	GGNNCC	4 cut(s)	556, 620, 621, 708
PspPI	GGNCC	3 cut(s)	267, 619, 853
PspPPI	RGGWCCY	1 cut(s)	619
PspXI	VCTCGAGB	1 cut(s)	441
PsuI	RGATCY	3 cut(s)	113, 452, 706
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	2 cut(s)	895, 959
RsaNI	GTAC	2 cut(s)	894, 958
RseI	CAYNNNNRTG	3 cut(s)	93, 739, 1044
SacI	GAGCTC	1 cut(s)	911
SaqAI	TTAA	7 cut(s)	194, 237, 498, 564, 599, 699, 1005
SatI	GCNGC	2 cut(s)	279, 921
Sau3AI	GATC	3 cut(s)	113, 452, 706
Sau96I	GGNCC	3 cut(s)	267, 619, 853
SchI	GAGTC	2 cut(s)	346, 620
ScrFI	CCNGG	2 cut(s)	291, 616
SduI	GDGCHC	3 cut(s)	13, 736, 911
SfaNI	GCATC	1 cut(s)	654
SfcI	CTRYAG	1 cut(s)	349
Sfr274I	CTCGAG	1 cut(s)	441
SinI	GGWCC	3 cut(s)	267, 619, 853
SlaI	CTCGAG	1 cut(s)	441
SmiMI	CAYNNNNRTG	3 cut(s)	93, 739, 1044
SmlI	CTYRAG	2 cut(s)	441, 502
SmoI	CTYRAG	2 cut(s)	441, 502
SpeI	ACTAGT	1 cut(s)	770
Sse9I	AATT	9 cut(s)	175, 191, 595, 700, 737, 876, 979, 1006, 1049
SsiI	CCGC	4 cut(s)	131, 279, 714, 936
SspI	AATATT	2 cut(s)	766, 868
SspMI	CTAG	3 cut(s)	540, 569, 771
SstI	GAGCTC	1 cut(s)	911
StyD4I	CCNGG	2 cut(s)	289, 614
StyI	CCWWGG	1 cut(s)	745
TaaI	ACNGT	4 cut(s)	15, 524, 686, 806
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	2 cut(s)	340, 442
TasI	AATT	9 cut(s)	175, 191, 595, 700, 737, 876, 979, 1006, 1049
TatI	WGTACW	2 cut(s)	893, 957
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	7 cut(s)	194, 237, 498, 564, 599, 699, 1005
Tru9I	TTAA	7 cut(s)	194, 237, 498, 564, 599, 699, 1005
TscAI	CASTG	2 cut(s)	217, 691
TseFI	GTSAC	1 cut(s)	1037
TseI	GCWGC	1 cut(s)	920
Tsp45I	GTSAC	1 cut(s)	1037
TspDTI	ATGAA	6 cut(s)	81, 405, 476, 960, 992, 1011
TspGWI	ACGGA	1 cut(s)	827
TspRI	CASTG	2 cut(s)	217, 691
VneI	GTGCAC	1 cut(s)	732
VpaK11BI	GGWCC	3 cut(s)	267, 619, 853
VspI	ATTAAT	2 cut(s)	564, 699
XapI	RAATTY	1 cut(s)	979
XhoI	CTCGAG	1 cut(s)	441
XmiI	GTMKAC	1 cut(s)	843
XspI	CTAG	3 cut(s)	540, 569, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.