Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011109

Physical Location & Seq

Genomic Coordinates Forward (+)

10231348 .. 10239063

Gene Structure 7716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAAGGCCTGAGTTTCTTTGTTGGAGTCATAGGCAACATCATCTCAGTGCTAATGTTCCTTGCTCCTGTTCCGACGTTTTGGAGAATCGTAAAACACCGATCGACGGAGGACTTTCAGAGCCTTCCTTATGTTTGCACACTGCTCAACTCCTCCCTGTGGACTTACTATGGAATCATTAAGCCCGGGGAATTGCTTGTGGCTACTGTCAATGGTTTTGGAGCTATCGTTGAGATTATCTACCTTTGTTTGTTTCTTATATATGCCCCGGAAAAAATGAGGGTAAAAACTGCCATTTTGATTGGAACCTTGGATGTGGGTTTTCTAGCAGTAGCCATTTTAGCTACATGGTTGGCATTGCTGGGAGATACACGTATTGATGCAATAGGATTCATATGTGCAGGCTTGAATATCATCATGTACGGATCGCCTCTAGTTGCCATGAAAACAGTGGTAACAACCAAGAGTGTGGAGTACATGCCATTCTTCCTTTCATTTTTCTTTTTCCTCAACGGAGGGGTGTGGACATTTTATGCTTGGCTCTTTCAAGATGTTTTCCTTGGGGTACCTAACGGGATAGGATTTCTTCTGGGAACGACGCAGCTAGTGTTATATGCGATATACAGAAATGCAAAACCATCCAATCAAATTTCAGATGGCGAACAGTTGGAAGAAGGAAGGCAACATGAACCCCTTCTCTCATCCTCTGATGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005353 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006950 GO:0006995 GO:0007034 GO:0007154 GO:0007623 GO:0008150 GO:0008643 GO:0008645 GO:0009266 GO:0009267 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009705 GO:0009743 GO:0009746 GO:0009750 GO:0009987 GO:0009991 GO:0010033 GO:0015144 GO:0015145 GO:0015149 GO:0015749 GO:0015755 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031090 GO:0031224 GO:0031667 GO:0031668 GO:0031669 GO:0033231 GO:0033554 GO:0034219 GO:0034284 GO:0034486 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048511 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051716 GO:0055085 GO:0065003 GO:0070417 GO:0071496 GO:0071702 GO:0071840 GO:0098588 GO:0098805 GO:1901700 GO:1902334

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

240

Amino Acids

26.45

Weight (kDa)

5.14

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	7 - 92	1.5e-28	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	128 - 212	6.6e-24	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16690 AT3G16690 AT3G16690 AT4G15920
fragaria_vesca	FvH4_4g18490
malus_domestica	MD13G1166800.v1.1
prunus_persica	Prupe.1G133300_v2.0.a1
pyrus_communis	pycom13g14240
rosa_chinensis	RchiOBHm_Chr4g0422071 RchiOBHm_Chr4g0423041
rosa_laevigata	RLG00000007592
rosa_multiflora	Rmu_sc0000830.1_g000007
rosa_roxburghii	Rroxscaffold_5G00365100
rosa_rugosa	Rorug04G0171500 Rorug04G0183100
rosa_samantha	Rh4AG243000 Rh4BG247600 Rh4CG257300 Rh4DG242500
rosa_wichuraiana	Rw4G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	565
AccB1I	GGYRCC	1 cut(s)	565
AclWI	GGATC	1 cut(s)	433
AcsI	RAATTY	1 cut(s)	648
AfaI	GTAC	3 cut(s)	422, 476, 567
AfiI	CCNNNNNNNGG	2 cut(s)	106, 159
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	409, 548
AluBI	AGCT	3 cut(s)	224, 344, 604
AluI	AGCT	3 cut(s)	224, 344, 604
AlwI	GGATC	1 cut(s)	433
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	2 cut(s)	601, 713
ApoI	RAATTY	1 cut(s)	648
Asp700I	GAANNNNTTC	1 cut(s)	693
Asp718I	GGTACC	1 cut(s)	565
AsuC2I	CCSGG	3 cut(s)	186, 187, 269
AvaI	CYCGRG	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	565
BbvI	GCAGC	2 cut(s)	613, 700
BccI	CCATC	2 cut(s)	646, 650
BcnI	CCSGG	3 cut(s)	186, 187, 269
BfaI	CTAG	3 cut(s)	326, 434, 605
BisI	GCNGC	2 cut(s)	602, 714
BlsI	GCNGC	2 cut(s)	603, 715
Bme1390I	CCNGG	3 cut(s)	186, 187, 269
BmeT110I	CYCGRG	1 cut(s)	185
BmiI	GGNNCC	2 cut(s)	307, 567
BmrFI	CCNGG	3 cut(s)	186, 187, 269
BmsI	GCATC	2 cut(s)	370, 700
BpuMI	CCSGG	3 cut(s)	186, 187, 269
BsaAI	YACGTR	1 cut(s)	374
BsaJI	CCNNGG	5 cut(s)	185, 186, 267, 309, 559
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 159
Bse3DI	GCAATG	1 cut(s)	356
BseDI	CCNNGG	5 cut(s)	185, 186, 267, 309, 559
BseGI	GGATG	3 cut(s)	319, 638, 701
BseLI	CCNNNNNNNGG	2 cut(s)	106, 159
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	613, 700
BseYI	CCCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	420
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	565
BsiEI	CGRYCG	1 cut(s)	104
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	2 cut(s)	186, 269
BslI	CCNNNNNNNGG	2 cut(s)	106, 159
BsnI	GGCC	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	185
Bsp143I	GATC	2 cut(s)	101, 425
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	2 cut(s)	307, 567
BspPI	GGATC	1 cut(s)	433
BspT107I	GGYRCC	1 cut(s)	565
BsrDI	GCAATG	1 cut(s)	356
BssECI	CCNNGG	5 cut(s)	185, 186, 267, 309, 559
BssMI	GATC	2 cut(s)	101, 425
BssT1I	CCWWGG	2 cut(s)	309, 559
Bst4CI	ACNGT	3 cut(s)	208, 451, 666
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	3 cut(s)	11, 46, 717
BstF5I	GGATG	3 cut(s)	319, 638, 701
BstKTI	GATC	2 cut(s)	104, 428
BstMBI	GATC	2 cut(s)	101, 425
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	3 cut(s)	184, 185, 267
BstV1I	GCAGC	2 cut(s)	613, 700
BstXI	CCANNNNNNTGG	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	319, 638, 701
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	3 cut(s)	54, 140, 456
Cac8I	GCNNGC	1 cut(s)	403
Cfr9I	CCCGGG	1 cut(s)	185
CseI	GACGC	1 cut(s)	607
Csp6I	GTAC	3 cut(s)	421, 475, 566
CviAII	CATG	5 cut(s)	348, 418, 442, 478, 686
CviQI	GTAC	3 cut(s)	421, 475, 566
DdeI	CTNAG	3 cut(s)	11, 46, 717
DpnI	GATC	2 cut(s)	103, 427
DpnII	GATC	2 cut(s)	101, 425
Eco130I	CCWWGG	2 cut(s)	309, 559
Eco147I	AGGCCT	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	185
EcoT14I	CCWWGG	2 cut(s)	309, 559
ErhI	CCWWGG	2 cut(s)	309, 559
FaeI	CATG	5 cut(s)	351, 421, 445, 481, 689
FatI	CATG	5 cut(s)	347, 417, 441, 477, 685
FauNDI	CATATG	1 cut(s)	395
Fnu4HI	GCNGC	2 cut(s)	602, 714
FokI	GGATG	3 cut(s)	326, 625, 688
Fsp4HI	GCNGC	2 cut(s)	602, 714
FspBI	CTAG	3 cut(s)	326, 434, 605
GluI	GCNGC	2 cut(s)	602, 714
GsaI	CCCAGC	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	2 cut(s)	186, 269
HgaI	GACGC	1 cut(s)	607
Hin1II	CATG	5 cut(s)	351, 421, 445, 481, 689
HinfI	GANTC	4 cut(s)	27, 87, 174, 390
HpaII	CCGG	2 cut(s)	186, 269
Hpy166II	GTNNAC	2 cut(s)	162, 525
Hpy188I	TCNGA	4 cut(s)	75, 120, 655, 709
Hpy188III	TCNNGA	1 cut(s)	548
Hpy8I	GTNNAC	2 cut(s)	162, 525
Hpy99I	CGWCG	3 cut(s)	79, 109, 601
HpyAV	CCTTC	4 cut(s)	134, 668, 672, 704
HpyCH4III	ACNGT	3 cut(s)	208, 451, 666
HpyCH4IV	ACGT	2 cut(s)	77, 373
HpyCH4V	TGCA	4 cut(s)	138, 383, 401, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	3 cut(s)	11, 46, 717
HpySE526I	ACGT	2 cut(s)	77, 373
Hsp92II	CATG	5 cut(s)	351, 421, 445, 481, 689
KpnI	GGTACC	1 cut(s)	569
Kzo9I	GATC	2 cut(s)	101, 425
LmnI	GCTCC	2 cut(s)	70, 221
LpnPI	CCDG	8 cut(s)	23, 81, 170, 199, 282, 347, 387, 575
Lsp1109I	GCAGC	2 cut(s)	613, 700
LweI	GCATC	2 cut(s)	370, 700
MaeI	CTAG	3 cut(s)	326, 434, 605
MaeII	ACGT	2 cut(s)	77, 373
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	2 cut(s)	103, 427
MboI	GATC	2 cut(s)	101, 425
MboII	GAAGA	3 cut(s)	478, 578, 683
MluCI	AATT	2 cut(s)	191, 648
MlyI	GAGTC	1 cut(s)	36
MmeI	TCCRAC	3 cut(s)	4, 98, 648
MnlI	CCTC	7 cut(s)	103, 163, 273, 441, 509, 518, 715
MroXI	GAANNNNTTC	1 cut(s)	693
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	2 cut(s)	186, 269
MspR9I	CCNGG	3 cut(s)	186, 187, 269
MwoI	GCNNNNNNNGC	1 cut(s)	341
NciI	CCSGG	3 cut(s)	186, 187, 269
NdeI	CATATG	1 cut(s)	395
NdeII	GATC	2 cut(s)	101, 425
NlaIII	CATG	5 cut(s)	351, 421, 445, 481, 689
NlaIV	GGNNCC	2 cut(s)	307, 567
NspI	RCATGY	1 cut(s)	481
PceI	AGGCCT	1 cut(s)	9
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	3 cut(s)	87, 174, 390
PkrI	GCNGC	2 cut(s)	603, 715
Ple19I	CGATCG	1 cut(s)	104
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	374
PspFI	CCCAGC	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	307, 567
PvuI	CGATCG	1 cut(s)	104
RsaI	GTAC	3 cut(s)	422, 476, 567
RsaNI	GTAC	3 cut(s)	421, 475, 566
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	2 cut(s)	602, 714
Sau3AI	GATC	2 cut(s)	101, 425
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	3 cut(s)	186, 187, 269
SetI	ASST	8 cut(s)	80, 226, 246, 311, 346, 376, 571, 606
SfaNI	GCATC	2 cut(s)	370, 700
SmaI	CCCGGG	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	2 cut(s)	191, 648
SseBI	AGGCCT	1 cut(s)	9
SspMI	CTAG	3 cut(s)	326, 434, 605
StuI	AGGCCT	1 cut(s)	9
StyD4I	CCNGG	3 cut(s)	184, 185, 267
StyI	CCWWGG	2 cut(s)	309, 559
TaaI	ACNGT	3 cut(s)	208, 451, 666
TaiI	ACGT	2 cut(s)	80, 376
TaqI	TCGA	1 cut(s)	104
TasI	AATT	2 cut(s)	191, 648
TatI	WGTACW	1 cut(s)	474
TfiI	GAWTC	3 cut(s)	87, 174, 390
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	3 cut(s)	54, 147, 456
TseI	GCWGC	2 cut(s)	601, 713
TspDTI	ATGAA	4 cut(s)	382, 458, 483, 702
TspGWI	ACGGA	3 cut(s)	122, 438, 528
TspMI	CCCGGG	1 cut(s)	185
TspRI	CASTG	3 cut(s)	54, 147, 456
XapI	RAATTY	1 cut(s)	648
XceI	RCATGY	1 cut(s)	481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmaI	CCCGGG	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	3 cut(s)	326, 434, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.