pycom13g14320

Belongs to the TCTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011211
Physical Location & Seq
Forward (+)
10341230 .. 10343392
2163 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 708 bp
ATGAGATTTTTGGATGAGTACATTCCCGTAATTTCACAGTTGCCCACGATCCTGCCATTCCGTGTTCTTCCCAAACCCTCGCCTCGCCTATATATATCGGTTACCAGGGCGTTCTCAAACCCTCTCATTCCCTTGCTGCGCCGCTCTCTGCCCTCCTCTCAAATCCTAATCTTTGTTGTTGGAGCGATCCGAGCCGCAATTATGTTGGTTTACCAAGACCTCCTCACCGGCGATGAGCTTCTCTCGGACTCGTTTCCATACAGGGAAATCCACAATGGAGTGCTCTGGGAAGTTGATGGCAAGTGGGTTGTTCAAGGAGCTGTTGATGTAGACATTGGTGCAAATCCATCTGCTGAAGGTGGAGGTGAGGATGAGGGTGTTGATGATCAAGCCGTCAAGGTTGTTGACATTGTTGACACATTTAGACTTCAGGAGCAACCTCCATACGACAAGAAGCAGTTTGTCACATGGGTGAAGAGGTATATCAAACTGTTGACACCCAAGTTGGAGGGGGAGAGCCAAGAGGTGTTCAAGAAGAACATTGAGGCAGCAACCAAGTTTCTGATTGGGAAGCTCAGCGACCTCCAATTCTTTGTTGGGGAGAGCATGCATGATGATGGCGTTTTGGTCTTTGCCTACTACAAGGAGGGCGCGACCGACCCAACATTTATCTACTTTGCTCATGGTTTGAAGGAGGTCAAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCTP

Protein Analysis

236

Amino Acids

26.48

Weight (kDa)

5.08

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCTP PF00838 68 - 231 1.2e-57 Translationally controlled tumour protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05540 AT3G16640
fragaria_vesca FvH4_4g18300
malus_domestica MD13G1167500.v1.1 MD13G1167600.v1.1
prunus_persica Prupe.1G134900_v2.0.a1 Prupe.1G134900_v2.0.a1
pyrus_communis pycom13g14320
rosa_chinensis RchiOBHm_Chr4g0422701
rosa_laevigata RLG00000007606
rosa_multiflora Rmu_sc0000830.1_g000051
rosa_roxburghii Rroxscaffold_5G00364620
rosa_rugosa Rorug04G0181000
rosa_samantha Rh4AG240900 Rh4BG244100 Rh4CG254900 Rh4DG239200 Rh5CG492100
rosa_wichuraiana Rw4G020790 Rw4G020800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 144
AccI GTMKAC 1 cut(s) 330
AccII CGCG 1 cut(s) 653
AciI CCGC 2 cut(s) 142, 195
AclWI GGATC 2 cut(s) 43, 181
AcuI CTGAAG 2 cut(s) 375, 413
AfaI GTAC 1 cut(s) 20
AgsI TTSAA 3 cut(s) 314, 532, 691
AjnI CCWGG 1 cut(s) 104
AleI CACNNNNGTG 1 cut(s) 470
AluBI AGCT 3 cut(s) 238, 320, 574
AluI AGCT 3 cut(s) 238, 320, 574
Alw21I GWGCWC 1 cut(s) 285
AlwI GGATC 2 cut(s) 43, 181
ApeKI GCWGC 2 cut(s) 136, 548
AspLEI GCGC 2 cut(s) 141, 653
AsuHPI GGTGA 3 cut(s) 217, 377, 484
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 123, 560
BccI CCATC 3 cut(s) 290, 355, 611
BceAI ACGGC 1 cut(s) 377
BciT130I CCWGG 1 cut(s) 106
BclI TGATCA 1 cut(s) 385
BisI GCNGC 4 cut(s) 137, 142, 195, 549
BlpI GCTNAGC 1 cut(s) 575
BlsI GCNGC 4 cut(s) 138, 143, 196, 550
Bme1390I CCNGG 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 106
BplI GAGNNNNNCTC 2 cut(s) 227, 259
Bpu1102I GCTNAGC 1 cut(s) 575
BsaJI CCNNGG 1 cut(s) 105
BsaXI ACNNNNNCTCC 1 cut(s) 686
Bse118I RCCGGY 1 cut(s) 227
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 19, 376
BseMII CTCAG 1 cut(s) 589
BseRI GAGGAG 2 cut(s) 145, 212
BseXI GCAGC 2 cut(s) 123, 560
Bsh1236I CGCG 1 cut(s) 653
Bsh1285I CGRYCG 1 cut(s) 657
BsiEI CGRYCG 1 cut(s) 657
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 3 cut(s) 48, 186, 385
Bsp1720I GCTNAGC 1 cut(s) 575
BspACI CCGC 2 cut(s) 142, 195
BspCNI CTCAG 1 cut(s) 588
BspFNI CGCG 1 cut(s) 653
BspPI GGATC 2 cut(s) 43, 181
BsrBI CCGCTC 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 227
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 3 cut(s) 48, 186, 385
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 2 cut(s) 39, 492
Bst6I CTCTTC 1 cut(s) 470
BstC8I GCNNGC 1 cut(s) 608
BstDEI CTNAG 1 cut(s) 575
BstEII GGTNACC 1 cut(s) 100
BstF5I GGATG 2 cut(s) 19, 376
BstFNI CGCG 1 cut(s) 653
BstHHI GCGC 2 cut(s) 141, 653
BstKTI GATC 3 cut(s) 51, 189, 388
BstMBI GATC 3 cut(s) 48, 186, 385
BstMCI CGRYCG 1 cut(s) 657
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 610
BstPI GGTNACC 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 104
BstUI CGCG 1 cut(s) 653
BstV1I GCAGC 2 cut(s) 123, 560
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 2 cut(s) 19, 376
Cac8I GCNNGC 1 cut(s) 608
CfoI GCGC 2 cut(s) 141, 653
Cfr10I RCCGGY 1 cut(s) 227
Csp6I GTAC 1 cut(s) 19
CviAII CATG 4 cut(s) 468, 607, 611, 683
CviJI RGCY 6 cut(s) 194, 238, 320, 392, 519, 574
CviKI_1 RGCY 6 cut(s) 194, 238, 320, 392, 519, 574
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 575
DpnI GATC 3 cut(s) 50, 188, 387
DpnII GATC 3 cut(s) 48, 186, 385
Eam1104I CTCTTC 1 cut(s) 470
EarI CTCTTC 1 cut(s) 470
Eco57I CTGAAG 2 cut(s) 375, 413
Eco91I GGTNACC 1 cut(s) 100
EcoO65I GGTNACC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 104
EcoT22I ATGCAT 1 cut(s) 612
FaeI CATG 4 cut(s) 471, 610, 614, 686
FatI CATG 4 cut(s) 467, 606, 610, 682
FbaI TGATCA 1 cut(s) 385
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 4 cut(s) 137, 142, 195, 549
FokI GGATG 2 cut(s) 26, 383
Fsp4HI GCNGC 4 cut(s) 137, 142, 195, 549
GlaI GCGC 2 cut(s) 140, 652
GluI GCNGC 4 cut(s) 137, 142, 195, 549
HapII CCGG 1 cut(s) 228
HhaI GCGC 2 cut(s) 141, 653
Hin1II CATG 4 cut(s) 471, 610, 614, 686
Hin6I GCGC 2 cut(s) 139, 651
HinP1I GCGC 2 cut(s) 139, 651
HincII GTYRAC 3 cut(s) 406, 415, 495
HindII GTYRAC 3 cut(s) 406, 415, 495
HinfI GANTC 1 cut(s) 248
HpaII CCGG 1 cut(s) 228
HphI GGTGA 3 cut(s) 217, 377, 484
Hpy166II GTNNAC 5 cut(s) 211, 331, 406, 415, 495
Hpy188I TCNGA 3 cut(s) 191, 247, 564
Hpy188III TCNNGA 2 cut(s) 431, 532
Hpy8I GTNNAC 5 cut(s) 211, 331, 406, 415, 495
HpyAV CCTTC 2 cut(s) 350, 685
HpyCH4III ACNGT 2 cut(s) 39, 492
HpyCH4V TGCA 2 cut(s) 341, 610
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 575
Hsp92II CATG 4 cut(s) 471, 610, 614, 686
HspAI GCGC 2 cut(s) 139, 651
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 3 cut(s) 48, 186, 385
LmnI GCTCC 3 cut(s) 182, 317, 433
LpnPI CCDG 7 cut(s) 65, 91, 118, 241, 247, 271, 416
Lsp1109I GCAGC 2 cut(s) 123, 560
MaeIII GTNAC 2 cut(s) 100, 463
MalI GATC 3 cut(s) 50, 188, 387
MbiI CCGCTC 1 cut(s) 144
MboI GATC 3 cut(s) 48, 186, 385
MboII GAAGA 3 cut(s) 59, 487, 547
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 3 cut(s) 30, 198, 587
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 2 cut(s) 160, 486
Mph1103I ATGCAT 1 cut(s) 612
MslI CAYNNNNRTG 2 cut(s) 470, 615
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 106
MvnI CGCG 1 cut(s) 653
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 3 cut(s) 48, 186, 385
NlaIII CATG 4 cut(s) 471, 610, 614, 686
NmuCI GTSAC 1 cut(s) 463
NsiI ATGCAT 1 cut(s) 612
NspI RCATGY 1 cut(s) 610
OliI CACNNNNGTG 1 cut(s) 470
PaeI GCATGC 1 cut(s) 610
PkrI GCNGC 4 cut(s) 138, 143, 196, 550
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 104
PspEI GGTNACC 1 cut(s) 100
PspGI CCWGG 1 cut(s) 104
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
RseI CAYNNNNRTG 2 cut(s) 470, 615
SatI GCNGC 4 cut(s) 137, 142, 195, 549
Sau3AI GATC 3 cut(s) 48, 186, 385
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 285
SgrAI CRCCGGYG 1 cut(s) 227
SmiMI CAYNNNNRTG 2 cut(s) 470, 615
SphI GCATGC 1 cut(s) 610
Sse9I AATT 3 cut(s) 30, 198, 587
SsiI CCGC 2 cut(s) 142, 195
StyD4I CCNGG 1 cut(s) 104
TaaI ACNGT 2 cut(s) 39, 492
TaqII GACCGA 1 cut(s) 671
TasI AATT 3 cut(s) 30, 198, 587
TatI WGTACW 1 cut(s) 18
TauI GCSGC 2 cut(s) 144, 197
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 2 cut(s) 136, 548
Tsp45I GTSAC 1 cut(s) 463
TspGWI ACGGA 1 cut(s) 50
XceI RCATGY 1 cut(s) 610
XcmI CCANNNNNNNNNTGG 1 cut(s) 593
XmiI GTMKAC 1 cut(s) 330
Zsp2I ATGCAT 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.