Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009955

Physical Location & Seq

Genomic Coordinates Forward (+)

11024298 .. 11026732

Gene Structure 2435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCTTCTGGTGAAACCCAAAAGGATGCAAGAAAACATGATTCTAACAACTCTCTTTCTCCGCCTAATTGCGACAACAAAAGCTACTCATCTATGTGTCCGACAGGTCGTATATCATTCAAGCTCTATGATTGGAATCCAGCAGAATTTCCTAGAAGACTCCGGCACCAAATCTTCCAATGGTTGGCCAATATGCCGGTTGAGTTGGAGGGATATATCCGCCCCGGATGTACTATCTTGACTGTTTTTATTGCAATGCCCAAGTTTATGTGGATGAAGTTGCTTGAAGATCCTGTATCATACATACATGAGTTTGTTGCTGTACCTGGGAAAATGCTATCTGGGAGAGGCAATATACTTATTTATCTAAACGACATGATTTTCCGTATTGTAAAAGATGGGACTTCTGTAATAAAGAAAAAAGTGGAGGTGCGAGCCCCAAGGCTTCATTACGTTCATCCTACATTTTTTGAGGCTGGCAAACCCATGGAGTTTGTTGCCTGTGGAAGTAATTTATTACAACCCAAATTTCGGTTTCTGGTATCCTTCTCCGGAAAGTATCTGGCCTATAATTATTCTCCTCCATCTTCTCATAGTCAGATTGAAGGGGACACTGCTAGTAATTTGGACCATCAATTGTGCAAGATACAGGTCCCTCAAACTGACGCAGATTGTTTTGGTCCTGCATTTATTGAGATTGAGAATGAATCTGGCTTATCCAACTTTATCCCGGTACTCATTGGGGACAAAGAGGTTTGTGCAGAAATGAAGACCATTCAGAATAGATATGAAGAATCTTTCTCTTCGCAAGGATTACACTGTTCTTTCAGTGGTTCTCTTTCAAACTCCTGTGAAGCATCTTCACTGAGGCACACAGCATTTTCTGAAGTTATTTTAGATATAGCATGGTTATTAAAACAGCCCTCGTCAGAAAACTTTCAACAGATCGATGACTGCTTCACAGATTCAAAGATTCAACTATCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0035874 GO:0040008 GO:0042594 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046983 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071496 GO:0080090 GO:0120126 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

330

Amino Acids

37.18

Weight (kDa)

6.15

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ig_SPL7	PF26102	143 - 258	6.3e-39	SPL7-like, immunoglobulin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18830 AT5G18830 AT5G18830
fragaria_vesca	FvH4_4g16910 FvH4_4g16910 FvH4_4g16910 FvH4_4g16910
malus_domestica	MD13G1175800.v1.1 MD16G1177600.v1.1
prunus_persica	Prupe.1G144600_v2.0.a1
pyrus_communis	pycom13g15150 pycom16g14900
rosa_chinensis	RchiOBHm_Chr4g0420491
rosa_laevigata	RLG00000007757
rosa_roxburghii	Rroxscaffold_5G00363110
rosa_rugosa	Rorug04G0164300
rosa_samantha	Rh4AG225900 Rh4BG228600 Rh4CG240200 Rh4DG224300
rosa_wichuraiana	Rw4G019500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	184
AccIII	TCCGGA	1 cut(s)	551
AciI	CCGC	2 cut(s)	62, 220
AclWI	GGATC	1 cut(s)	284
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	2 cut(s)	146, 527
AcuI	CTGAAG	1 cut(s)	906
AfaI	GTAC	3 cut(s)	232, 324, 735
AfiI	CCNNNNNNNGG	2 cut(s)	184, 531
AgsI	TTSAA	7 cut(s)	121, 287, 605, 843, 941, 969, 977
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	2 cut(s)	84, 124
AluI	AGCT	2 cut(s)	84, 124
AlwI	GGATC	1 cut(s)	284
Aor13HI	TCCGGA	1 cut(s)	551
AoxI	GGCC	2 cut(s)	186, 564
ApoI	RAATTY	2 cut(s)	146, 527
Asp700I	GAANNNNTTC	1 cut(s)	936
AspS9I	GGNCC	3 cut(s)	628, 652, 680
AsuC2I	CCSGG	2 cut(s)	225, 731
AsuHPI	GGTGA	1 cut(s)	23
AvaII	GGWCC	3 cut(s)	628, 652, 680
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	439
BbsI	GAAGAC	2 cut(s)	163, 776
BccI	CCATC	3 cut(s)	392, 592, 639
BciT130I	CCWGG	1 cut(s)	327
BciVI	GTATCC	1 cut(s)	553
BcnI	CCSGG	2 cut(s)	225, 731
BfaI	CTAG	2 cut(s)	153, 618
BfuI	GTATCC	1 cut(s)	553
Bme1390I	CCNGG	3 cut(s)	225, 327, 731
Bme18I	GGWCC	3 cut(s)	628, 652, 680
BmgT120I	GGNCC	3 cut(s)	628, 652, 680
BmiI	GGNNCC	2 cut(s)	167, 654
BmrFI	CCNGG	3 cut(s)	225, 327, 731
BmsI	GCATC	2 cut(s)	16, 866
BpiI	GAAGAC	2 cut(s)	163, 776
BpuMI	CCSGG	2 cut(s)	225, 731
Bsa29I	ATCGAT	1 cut(s)	948
BsaBI	GATNNNNATC	1 cut(s)	135
BsaJI	CCNNGG	4 cut(s)	223, 326, 440, 486
BsaWI	WCCGGW	1 cut(s)	551
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 531
Bse118I	RCCGGY	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	261
Bse8I	GATNNNNATC	1 cut(s)	135
BseAI	TCCGGA	1 cut(s)	551
BseBI	CCWGG	1 cut(s)	327
BseCI	ATCGAT	1 cut(s)	948
BseDI	CCNNGG	4 cut(s)	223, 326, 440, 486
BseGI	GGATG	4 cut(s)	31, 233, 279, 457
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	184, 531
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	857
BseRI	GAGGAG	1 cut(s)	570
BsgI	GTGCAG	1 cut(s)	780
BshFI	GGCC	2 cut(s)	188, 566
BshNI	GGYRCC	1 cut(s)	165
BshVI	ATCGAT	1 cut(s)	948
BsiSI	CCGG	5 cut(s)	163, 197, 225, 552, 731
BslFI	GGGAC	4 cut(s)	415, 623, 638, 758
BslI	CCNNNNNNNGG	2 cut(s)	184, 531
BsmFI	GGGAC	4 cut(s)	415, 623, 638, 758
BsnI	GGCC	2 cut(s)	188, 566
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp13I	TCCGGA	1 cut(s)	551
Bsp143I	GATC	2 cut(s)	289, 945
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	2 cut(s)	62, 220
BspANI	GGCC	2 cut(s)	188, 566
BspCNI	CTCAG	1 cut(s)	858
BspDI	ATCGAT	1 cut(s)	948
BspEI	TCCGGA	1 cut(s)	551
BspLI	GGNNCC	2 cut(s)	167, 654
BspPI	GGATC	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	4 cut(s)	223, 326, 440, 486
BssMI	GATC	2 cut(s)	289, 945
BssT1I	CCWWGG	2 cut(s)	440, 486
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	244, 821
Bst6I	CTCTTC	1 cut(s)	808
BstC8I	GCNNGC	2 cut(s)	435, 478
BstDEI	CTNAG	1 cut(s)	866
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	4 cut(s)	31, 233, 279, 457
BstKTI	GATC	2 cut(s)	292, 948
BstMBI	GATC	2 cut(s)	289, 945
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	3 cut(s)	223, 325, 729
BstV2I	GAAGAC	2 cut(s)	163, 776
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
Bsu15I	ATCGAT	1 cut(s)	948
BsuI	GTATCC	1 cut(s)	553
BsuRI	GGCC	2 cut(s)	188, 566
BsuTUI	ATCGAT	1 cut(s)	948
BtgI	CCRYGG	1 cut(s)	486
BtsCI	GGATG	4 cut(s)	31, 233, 279, 457
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	4 cut(s)	612, 817, 835, 863
Cac8I	GCNNGC	2 cut(s)	435, 478
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	3 cut(s)	628, 652, 680
ClaI	ATCGAT	1 cut(s)	948
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	3 cut(s)	231, 323, 734
CviAII	CATG	5 cut(s)	38, 308, 376, 487, 906
CviQI	GTAC	3 cut(s)	231, 323, 734
DdeI	CTNAG	1 cut(s)	866
DpnI	GATC	2 cut(s)	291, 947
DpnII	GATC	2 cut(s)	289, 945
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	808
EarI	CTCTTC	1 cut(s)	808
EciI	GGCGGA	2 cut(s)	51, 209
Eco130I	CCWWGG	2 cut(s)	440, 486
Eco24I	GRGCYC	1 cut(s)	439
Eco47I	GGWCC	3 cut(s)	628, 652, 680
Eco57I	CTGAAG	1 cut(s)	906
EcoO109I	RGGNCCY	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	2 cut(s)	440, 486
EcoT38I	GRGCYC	1 cut(s)	439
ErhI	CCWWGG	2 cut(s)	440, 486
FaeI	CATG	5 cut(s)	41, 311, 379, 490, 909
FaqI	GGGAC	4 cut(s)	415, 623, 638, 758
FatI	CATG	5 cut(s)	37, 307, 375, 486, 905
FokI	GGATG	4 cut(s)	38, 240, 286, 444
FriOI	GRGCYC	1 cut(s)	439
FspBI	CTAG	2 cut(s)	153, 618
HaeIII	GGCC	2 cut(s)	188, 566
HapII	CCGG	5 cut(s)	163, 197, 225, 552, 731
HgaI	GACGC	1 cut(s)	674
Hin1II	CATG	5 cut(s)	41, 311, 379, 490, 909
HinfI	GANTC	7 cut(s)	41, 136, 159, 707, 794, 965, 973
HpaII	CCGG	5 cut(s)	163, 197, 225, 552, 731
HphI	GGTGA	1 cut(s)	23
Hpy188I	TCNGA	5 cut(s)	102, 600, 780, 886, 931
Hpy188III	TCNNGA	2 cut(s)	238, 552
HpyAV	CCTTC	2 cut(s)	556, 599
HpyCH4III	ACNGT	2 cut(s)	244, 821
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	5 cut(s)	29, 254, 642, 686, 761
HpyF3I	CTNAG	1 cut(s)	866
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	5 cut(s)	41, 311, 379, 490, 909
Kpn2I	TCCGGA	1 cut(s)	551
Kzo9I	GATC	2 cut(s)	289, 945
LweI	GCATC	2 cut(s)	16, 866
MaeI	CTAG	2 cut(s)	153, 618
MaeII	ACGT	1 cut(s)	453
MalI	GATC	2 cut(s)	291, 947
MboI	GATC	2 cut(s)	289, 945
MboII	GAAGA	8 cut(s)	166, 168, 299, 579, 781, 795, 803, 852
MfeI	CAATTG	1 cut(s)	635
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	439
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	7 cut(s)	67, 146, 511, 527, 571, 622, 635
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	153
MmeI	TCCRAC	3 cut(s)	125, 186, 744
MnlI	CCTC	9 cut(s)	202, 341, 421, 466, 591, 666, 745, 861, 934
Mox20I	TGGCCA	1 cut(s)	188
MroI	TCCGGA	1 cut(s)	551
MroXI	GAANNNNTTC	1 cut(s)	936
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	2 cut(s)	914, 988
MslI	CAYNNNNRTG	1 cut(s)	94
Msp20I	TGGCCA	1 cut(s)	188
MspI	CCGG	5 cut(s)	163, 197, 225, 552, 731
MspR9I	CCNGG	3 cut(s)	225, 327, 731
MunI	CAATTG	1 cut(s)	635
MvaI	CCWGG	1 cut(s)	327
NciI	CCSGG	2 cut(s)	225, 731
NcoI	CCATGG	1 cut(s)	486
NdeII	GATC	2 cut(s)	289, 945
NlaIII	CATG	5 cut(s)	41, 311, 379, 490, 909
NlaIV	GGNNCC	2 cut(s)	167, 654
PdmI	GAANNNNTTC	1 cut(s)	936
PfeI	GAWTC	6 cut(s)	41, 136, 707, 794, 965, 973
PflMI	CCANNNNNTGG	1 cut(s)	184
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
PpuMI	RGGWCCY	1 cut(s)	652
Psp5II	RGGWCCY	1 cut(s)	652
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	167, 654
PspPI	GGNCC	3 cut(s)	628, 652, 680
PspPPI	RGGWCCY	1 cut(s)	652
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	3 cut(s)	232, 324, 735
RsaNI	GTAC	3 cut(s)	231, 323, 734
RseI	CAYNNNNRTG	1 cut(s)	94
SaqAI	TTAA	2 cut(s)	914, 988
Sau3AI	GATC	2 cut(s)	289, 945
Sau96I	GGNCC	3 cut(s)	628, 652, 680
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	3 cut(s)	225, 327, 731
SduI	GDGCHC	1 cut(s)	439
SetI	ASST	8 cut(s)	86, 109, 126, 328, 432, 456, 654, 756
SfaNI	GCATC	2 cut(s)	16, 866
SinI	GGWCC	3 cut(s)	628, 652, 680
SmiMI	CAYNNNNRTG	1 cut(s)	94
Sse9I	AATT	7 cut(s)	67, 146, 511, 527, 571, 622, 635
SsiI	CCGC	2 cut(s)	62, 220
SspMI	CTAG	2 cut(s)	153, 618
StyD4I	CCNGG	3 cut(s)	223, 325, 729
StyI	CCWWGG	2 cut(s)	440, 486
TaaI	ACNGT	2 cut(s)	244, 821
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	1 cut(s)	948
TasI	AATT	7 cut(s)	67, 146, 511, 527, 571, 622, 635
TatI	WGTACW	1 cut(s)	230
TfiI	GAWTC	6 cut(s)	41, 136, 707, 794, 965, 973
Tru1I	TTAA	2 cut(s)	914, 988
Tru9I	TTAA	2 cut(s)	914, 988
TscAI	CASTG	4 cut(s)	619, 824, 835, 870
TspDTI	ATGAA	6 cut(s)	290, 437, 446, 720, 782, 804
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	4 cut(s)	619, 824, 835, 870
Van91I	CCANNNNNTGG	1 cut(s)	184
VpaK11BI	GGWCC	3 cut(s)	628, 652, 680
XapI	RAATTY	2 cut(s)	146, 527
XmnI	GAANNNNTTC	1 cut(s)	936
XspI	CTAG	2 cut(s)	153, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.