Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009955

Physical Location & Seq

Genomic Coordinates Reverse (-)

42829685 .. 42836676

Gene Structure 6992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG224300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2469 bp

ATGCAAAAGTCCCCCCCTCTTTCCCCAACCCAATCACAACGGCAGCGTTTAGACCAACCTAGGGTTTCTCACATTCCTCAACCGCCCATGGCCGCCGGCGACACTTCATCTGTCTGGGACTGGGGCGATCTCCTCGACTTCACCGTGGACGACGACTTGGCCATCTCATGGGGCTCCGCCGACCCGCCCAACCCGCCCGAGGCCCACCACCTGCCCCCGCCGGACGACCCGCCGGAGAATCCGAATCCGAGCCCCCCGGCGCCGGCGGCGAGGATAAGGAAGCGCGACCCGAGACTGGCGTGCTCCAACTTTCTGGCGGGTCACGTGCCGTGCGCGTGCCCGGAGGTGGACGAGAAAATGATGGAACTGGAGGAGGAGGAAGCCGGGCACGGGAAGAAGCGGGTCAGGACGGTTCGGGCCCCGCCCGGGACGGCCCGGTGTCAGGTCCCGACTTGTGGGGCCGACATTAAGGAGCTCAAAGGCTATCACCGCAGGCACAGAGTCTGCCTTGCCTGCGCCAATGCAACCACCGTCGTCCTCGGCGGCGACGCCAAGCGTTATTGTCAGCAGTGTGGCAAGTTCCATGTCTTATCTGATTTTGATGAAGGTAAGCGGAGCTGTCGAAGAAAGTTAGAGCGTCACAATAACAGAAGAAGAAGAAAACCGAGTGATTCAAAAGCAGGGAAGGAATCTCAAAGGGAAGTTCAAACTGAAGGTGGCAATCGTGATGGTGAAGCAGGAGAAGACAGTTTACAGTTAAGCAGCCAGATAAATGAGAAGGAAGACTTGGTGGAGTCAGAAGGTGGGGGTATTTCTGCCCTCTTTTCAACGCCTAATTCCCAGAATGTCGGCAGTGATGGTGTTGCATCGGGCCTGACTTCTGGTGATACCCAAATGGATGGAAGAAAACATGATTCCAATCACTCTCTTTCTCCGCCACAGGGCGACAACAAAAGTGTCTACTCATCTATGTGTCCGACAGGTCGTATCTCATTCAAGCTCTATGATTGGAATCCAGCAGAATTCCCTAGAAGACTTCGGCACCAAATATTCCAATGGTTGGCTAGTATGCCGGTTGAGTTGGAGGGGTATATCCGTCCTGGATGTATTATCTTGACTGTTTTTATTGCAATGCCAAAGTTTATGTGGATGAAGTTACTTGATGATCCTGCATCGTATCTACATAACTTTGTTATCGTACCTGGAAGCATGCTATCGGGGAGGGGAAATATGCTTGTTTATCTCAATGACATGATTTTCCGTGTTGTAAAAGACAGAACTTCTGTAATAAAAGCCAAAGTGGAGGTGCGGGCCCCCAGGCTACATTATATTCATCCTACATGTTTTGAAGCAGGCAAGCCAATGGAGTTTTTTGTCTGTGGAAGTAATTTGTTACAACCCAAACTTAGGTTTCTTGTATCCTTCTCTGGAAAGTATCTGGCCGATAATTATGACCCGGAATCCTCTCATACTCAGATTGAAGGGGACAGCACTGCTGCTAATATAGATCATCAACTTTACAAGATACATGTGCCTCATACAGAAGCAACTAGTTTTGGTCCTGCGTTTATTGAGGTTGAAAATGAATCTGGGTTATCAAACTTTTTACCTGTACTCATTGGGAACAAAGAGATTTGTGCTGAAATGGAGACTATTCAAAAAAGATTAGAAGAATCTCTTTTTGTGCGAGGATCATCAGACGTTTCTTCCAGTGGTTCTCTGTTGACCTCTTGTGAAGCATCTTCACTCAGACACAGAGCATTTTCTGAAGTTATTTTAGATATAGCATGGCTTCTTAGAAAGCCCTCAGAAAATGTCCAACAGATCATGACTTCTTCACAGGCACAAAGATTCAATAATTTATTGAACTTATTGATATTCTTCAAGTCAACAACCATACTGGAGAAAGTGTTAGAAAATCTGAACACTCTGATGGATAATGTAGAGATAAACAACCCCGATAGTGGCAGTATTGATGCTGATATGAGGCTATTACAAAAGTACATGGATTGTGCTCATGATATTCTTTGTCAAAAACTTCAAAGTTCTGGGGTTTCAGTTGTGGAGCCTGGAAGCTTGGTGCAGAAACAGGATCTTATTTCTCAAAGTCTAAGCTGCTTTCAGAGCAAACAACATTTTCCCATACACACTCAGGATACAGAGATTATTGTAGATGGTAAGATGGATGCGATGTTGGGTTCAACGTCTAATGAGAGAAGTGAGACTCTTCCACTTTTAAACAAAAAAGCAGCCACGAAAGCCAACCTTATCAAACAGGCTAACTGTGGTATTTCTTCTGGGGAGCTCCTAAGCTCTCGCTCTAGGCGAACATTCTTGGGATTTCGCCCCACTCTCTATGTAATTTCTGCCACTGCTATGTGTTTAGGAATTTGTGCGGTCGTCTTTCATCCTCATAAGGTTGGCGAATTAGCAGTAACAATACGCAGGTGTCTATTTGACAAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0035874 GO:0040008 GO:0042594 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046983 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071496 GO:0080090 GO:0120126 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

822

Amino Acids

91.21

Weight (kDa)

6.69

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	147 - 221	8.5e-28	SBP domain
Ig_SPL7	PF26102	435 - 550	2.6e-37	SPL7-like, immunoglobulin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18830 AT5G18830 AT5G18830
fragaria_vesca	FvH4_4g16910 FvH4_4g16910 FvH4_4g16910 FvH4_4g16910
malus_domestica	MD13G1175800.v1.1 MD16G1177600.v1.1
prunus_persica	Prupe.1G144600_v2.0.a1
pyrus_communis	pycom13g15150 pycom16g14900
rosa_chinensis	RchiOBHm_Chr4g0420491
rosa_laevigata	RLG00000007757
rosa_roxburghii	Rroxscaffold_5G00363110
rosa_rugosa	Rorug04G0164300
rosa_samantha	Rh4AG225900 Rh4BG228600 Rh4CG240200 Rh4DG224300
rosa_wichuraiana	Rw4G019500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	219, 2436
Acc36I	ACCTGC	2 cut(s)	219, 2436
AccB1I	GGYRCC	2 cut(s)	259, 1041
AccB7I	CCANNNNNTGG	2 cut(s)	168, 1060
AccI	GTMKAC	1 cut(s)	960
AccII	CGCG	2 cut(s)	285, 335
AclWI	GGATC	3 cut(s)	1160, 1699, 2100
AcoI	YGGCCR	3 cut(s)	90, 159, 1440
AcsI	RAATTY	2 cut(s)	1022, 2388
AcuI	CTGAAG	2 cut(s)	732, 1788
AcvI	CACGTG	1 cut(s)	325
AcyI	GRCGYC	2 cut(s)	260, 549
AfaI	GTAC	3 cut(s)	1200, 1614, 2003
AflIII	ACRYGT	2 cut(s)	1340, 1528
AhlI	ACTAGT	1 cut(s)	1550
AjnI	CCWGG	4 cut(s)	1099, 1201, 1316, 2068
AjuI	GAANNNNNNNTTGG	2 cut(s)	770, 802
AluBI	AGCT	7 cut(s)	475, 618, 1000, 2076, 2115, 2305, 2313
AluI	AGCT	7 cut(s)	475, 618, 1000, 2076, 2115, 2305, 2313
Alw21I	GWGCWC	4 cut(s)	305, 477, 2017, 2307
Alw26I	GTCTC	3 cut(s)	286, 1643, 2216
AlwI	GGATC	3 cut(s)	1160, 1699, 2100
AlwNI	CAGNNNCTG	1 cut(s)	504
Ama87I	CYCGRG	3 cut(s)	197, 289, 425
AoxI	GGCC	9 cut(s)	90, 159, 201, 417, 432, 459, 871, 1311, 1440
ApaI	GGGCCC	2 cut(s)	421, 1315
ApeKI	GCWGC	5 cut(s)	43, 762, 1496, 2115, 2249
ApoI	RAATTY	2 cut(s)	1022, 2388
AspA2I	CCTAGG	1 cut(s)	59
AspLEI	GCGC	4 cut(s)	262, 285, 335, 518
AsuC2I	CCSGG	7 cut(s)	257, 341, 385, 426, 427, 436, 1457
AsuHPI	GGTGA	4 cut(s)	133, 479, 743, 896
AvaI	CYCGRG	3 cut(s)	197, 289, 425
AvaII	GGWCC	2 cut(s)	445, 1559
AvrII	CCTAGG	1 cut(s)	59
BaeGI	GKGCMC	4 cut(s)	341, 390, 421, 1315
BalI	TGGCCA	1 cut(s)	161
BanI	GGYRCC	2 cut(s)	259, 1041
BanII	GRGCYC	6 cut(s)	176, 254, 421, 477, 1315, 2307
BarI	GAAGNNNNNNTAC	2 cut(s)	735, 767
BbrPI	CACGTG	1 cut(s)	325
BbsI	GAAGAC	3 cut(s)	750, 789, 1039
Bbv12I	GWGCWC	4 cut(s)	305, 477, 2017, 2307
BbvI	GCAGC	5 cut(s)	55, 774, 1483, 2102, 2261
BccI	CCATC	8 cut(s)	170, 355, 722, 851, 893, 1927, 2168, 2176
BceAI	ACGGC	3 cut(s)	56, 313, 447
BciT130I	CCWGG	4 cut(s)	1101, 1203, 1318, 2070
BciVI	GTATCC	2 cut(s)	1429, 2149
BcnI	CCSGG	7 cut(s)	257, 341, 385, 426, 427, 436, 1457
BcoDI	GTCTC	3 cut(s)	286, 1643, 2216
BcuI	ACTAGT	1 cut(s)	1550
BfaI	CTAG	5 cut(s)	60, 1029, 1065, 1551, 2322
BfoI	RGCGCY	1 cut(s)	263
BfuAI	ACCTGC	2 cut(s)	219, 2436
BfuI	GTATCC	2 cut(s)	1429, 2149
BisI	GCNGC	8 cut(s)	44, 93, 267, 544, 763, 1497, 2116, 2250
BlnI	CCTAGG	1 cut(s)	59
BlsI	GCNGC	8 cut(s)	45, 94, 268, 545, 764, 1498, 2117, 2251
Bme18I	GGWCC	2 cut(s)	445, 1559
BmeT110I	CYCGRG	3 cut(s)	197, 289, 425
BmrI	ACTGGG	1 cut(s)	130
BmsI	GCATC	5 cut(s)	875, 1181, 1748, 1966, 2176
BmuI	ACTGGG	1 cut(s)	130
BpiI	GAAGAC	3 cut(s)	750, 789, 1039
BpmI	CTGGAG	2 cut(s)	389, 1922
Bpu10I	CCTNAGC	1 cut(s)	2309
BpuMI	CCSGG	7 cut(s)	257, 341, 385, 426, 427, 436, 1457
BsaAI	YACGTR	1 cut(s)	325
BsaBI	GATNNNNATC	2 cut(s)	918, 1011
BsaHI	GRCGYC	2 cut(s)	260, 549
BsaJI	CCNNGG	8 cut(s)	59, 87, 144, 198, 255, 425, 538, 1316
BsaXI	ACNNNNNCTCC	2 cut(s)	1895, 1925
Bse118I	RCCGGY	3 cut(s)	95, 262, 1072
Bse1I	ACTGG	5 cut(s)	125, 300, 372, 1710, 1905
Bse3DI	GCAATG	1 cut(s)	1137
Bse8I	GATNNNNATC	2 cut(s)	918, 1011
BseBI	CCWGG	4 cut(s)	1101, 1203, 1318, 2070
BseDI	CCNNGG	8 cut(s)	59, 87, 144, 198, 255, 425, 538, 1316
BseGI	GGATG	6 cut(s)	904, 1109, 1155, 1333, 2191, 2407
BseJI	GATNNNNATC	2 cut(s)	918, 1011
BseMI	GCAATG	1 cut(s)	1137
BseMII	CTCAG	4 cut(s)	1487, 1762, 1821, 2165
BseNI	ACTGG	5 cut(s)	125, 300, 372, 1710, 1905
BseRI	GAGGAG	3 cut(s)	122, 386, 389
BseSI	GKGCMC	4 cut(s)	341, 390, 421, 1315
BseXI	GCAGC	5 cut(s)	55, 774, 1483, 2102, 2261
BsgI	GTGCAG	1 cut(s)	2102
Bsh1236I	CGCG	2 cut(s)	285, 335
Bsh1285I	CGRYCG	1 cut(s)	2400
BshFI	GGCC	9 cut(s)	92, 161, 203, 419, 434, 461, 873, 1313, 1442
BshNI	GGYRCC	2 cut(s)	259, 1041
BsiEI	CGRYCG	1 cut(s)	2400
BsiHKAI	GWGCWC	4 cut(s)	305, 477, 2017, 2307
BsiHKCI	CYCGRG	3 cut(s)	197, 289, 425
BslFI	GGGAC	4 cut(s)	131, 431, 442, 1499
BsmAI	GTCTC	3 cut(s)	286, 1643, 2216
BsmFI	GGGAC	4 cut(s)	131, 431, 442, 1499
BsnI	GGCC	9 cut(s)	92, 161, 203, 419, 434, 461, 873, 1313, 1442
BsoBI	CYCGRG	3 cut(s)	197, 289, 425
Bsp120I	GGGCCC	2 cut(s)	417, 1311
Bsp143I	GATC	6 cut(s)	127, 1165, 1507, 1691, 1824, 2092
Bsp19I	CCATGG	1 cut(s)	87
BspANI	GGCC	9 cut(s)	92, 161, 203, 419, 434, 461, 873, 1313, 1442
BspCNI	CTCAG	4 cut(s)	1486, 1761, 1820, 2164
BspFNI	CGCG	2 cut(s)	285, 335
BspHI	TCATGA	2 cut(s)	1827, 2017
BspMI	ACCTGC	2 cut(s)	219, 2436
BspPI	GGATC	3 cut(s)	1160, 1699, 2100
BspT107I	GGYRCC	2 cut(s)	259, 1041
BsrDI	GCAATG	1 cut(s)	1137
BsrFI	RCCGGY	3 cut(s)	95, 262, 1072
BsrI	ACTGG	5 cut(s)	125, 300, 372, 1710, 1905
BssAI	RCCGGY	3 cut(s)	95, 262, 1072
BssECI	CCNNGG	8 cut(s)	59, 87, 144, 198, 255, 425, 538, 1316
BssMI	GATC	6 cut(s)	127, 1165, 1507, 1691, 1824, 2092
BssNI	GRCGYC	2 cut(s)	260, 549
BssT1I	CCWWGG	2 cut(s)	59, 87
Bst2UI	CCWGG	4 cut(s)	1101, 1203, 1318, 2070
Bst4CI	ACNGT	7 cut(s)	145, 412, 532, 749, 756, 1120, 2285
Bst6I	CTCTTC	1 cut(s)	2232
BstACI	GRCGYC	2 cut(s)	260, 549
BstBAI	YACGTR	1 cut(s)	325
BstDEI	CTNAG	8 cut(s)	1406, 1473, 1748, 1796, 1807, 2111, 2151, 2309
BstDSI	CCRYGG	2 cut(s)	87, 144
BstF5I	GGATG	6 cut(s)	904, 1109, 1155, 1333, 2191, 2407
BstFNI	CGCG	2 cut(s)	285, 335
BstH2I	RGCGCY	1 cut(s)	263
BstHHI	GCGC	4 cut(s)	262, 285, 335, 518
BstKTI	GATC	6 cut(s)	130, 1168, 1510, 1694, 1827, 2095
BstMAI	GTCTC	3 cut(s)	286, 1643, 2216
BstMBI	GATC	6 cut(s)	127, 1165, 1507, 1691, 1824, 2092
BstMCI	CGRYCG	1 cut(s)	2400
BstMWI	GCNNNNNNNGC	6 cut(s)	193, 266, 489, 513, 2124, 2258
BstNI	CCWGG	4 cut(s)	1101, 1203, 1318, 2070
BstNSI	RCATGY	3 cut(s)	1213, 1344, 1532
BstSLI	GKGCMC	4 cut(s)	341, 390, 421, 1315
BstUI	CGCG	2 cut(s)	285, 335
BstV1I	GCAGC	5 cut(s)	55, 774, 1483, 2102, 2261
BstV2I	GAAGAC	3 cut(s)	750, 789, 1039
BstX2I	RGATCY	1 cut(s)	2092
BstXI	CCANNNNNNTGG	2 cut(s)	313, 899
BstYI	RGATCY	1 cut(s)	2092
BsuI	GTATCC	2 cut(s)	1429, 2149
BsuRI	GGCC	9 cut(s)	92, 161, 203, 419, 434, 461, 873, 1313, 1442
BtgI	CCRYGG	2 cut(s)	87, 144
BtgZI	GCGATG	1 cut(s)	2204
BtsCI	GGATG	6 cut(s)	904, 1109, 1155, 1333, 2191, 2407
BtsI	GCAGTG	4 cut(s)	575, 859, 1491, 2370
BtsIMutI	CAGTG	5 cut(s)	575, 859, 1491, 1717, 2370
BveI	ACCTGC	2 cut(s)	219, 2436
CaiI	CAGNNNCTG	1 cut(s)	504
CciI	TCATGA	2 cut(s)	1827, 2017
CfoI	GCGC	4 cut(s)	262, 285, 335, 518
Cfr10I	RCCGGY	3 cut(s)	95, 262, 1072
Cfr9I	CCCGGG	1 cut(s)	425
CseI	GACGC	2 cut(s)	557, 626
Csp6I	GTAC	3 cut(s)	1199, 1613, 2002
CviQI	GTAC	3 cut(s)	1199, 1613, 2002
DdeI	CTNAG	8 cut(s)	1406, 1473, 1748, 1796, 1807, 2111, 2151, 2309
DinI	GGCGCC	1 cut(s)	261
DpnI	GATC	6 cut(s)	129, 1167, 1509, 1693, 1826, 2094
DpnII	GATC	6 cut(s)	127, 1165, 1507, 1691, 1824, 2092
DraI	TTTAAA	1 cut(s)	2238
EaeI	YGGCCR	3 cut(s)	90, 159, 1440
Eam1104I	CTCTTC	1 cut(s)	2232
EarI	CTCTTC	1 cut(s)	2232
EciI	GGCGGA	2 cut(s)	166, 924
Ecl136II	GAGCTC	2 cut(s)	475, 2305
Eco130I	CCWWGG	2 cut(s)	59, 87
Eco24I	GRGCYC	6 cut(s)	176, 254, 421, 477, 1315, 2307
Eco47I	GGWCC	2 cut(s)	445, 1559
Eco53kI	GAGCTC	2 cut(s)	475, 2305
Eco57I	CTGAAG	2 cut(s)	732, 1788
Eco72I	CACGTG	1 cut(s)	325
Eco88I	CYCGRG	3 cut(s)	197, 289, 425
EcoICRI	GAGCTC	2 cut(s)	475, 2305
EcoO109I	RGGNCCY	3 cut(s)	418, 445, 1312
EcoRI	GAATTC	1 cut(s)	1022
EcoRII	CCWGG	4 cut(s)	1099, 1201, 1316, 2068
EcoT14I	CCWWGG	2 cut(s)	59, 87
EcoT38I	GRGCYC	6 cut(s)	176, 254, 421, 477, 1315, 2307
EgeI	GGCGCC	1 cut(s)	261
EheI	GGCGCC	1 cut(s)	261
ErhI	CCWWGG	2 cut(s)	59, 87
FalI	AAGNNNNNCTT	6 cut(s)	770, 802, 1662, 1694, 2250, 2282
FaqI	GGGAC	4 cut(s)	131, 431, 442, 1499
FauI	CCCGC	8 cut(s)	192, 201, 225, 237, 310, 393, 429, 1302
FblI	GTMKAC	1 cut(s)	960
Fnu4HI	GCNGC	8 cut(s)	44, 93, 267, 544, 763, 1497, 2116, 2250
FokI	GGATG	6 cut(s)	911, 1116, 1162, 1320, 2198, 2394
FriOI	GRGCYC	6 cut(s)	176, 254, 421, 477, 1315, 2307
Fsp4HI	GCNGC	8 cut(s)	44, 93, 267, 544, 763, 1497, 2116, 2250
FspBI	CTAG	5 cut(s)	60, 1029, 1065, 1551, 2322
GlaI	GCGC	4 cut(s)	261, 284, 334, 517
GluI	GCNGC	8 cut(s)	44, 93, 267, 544, 763, 1497, 2116, 2250
GsuI	CTGGAG	2 cut(s)	389, 1922
HaeII	RGCGCY	1 cut(s)	263
HaeIII	GGCC	9 cut(s)	92, 161, 203, 419, 434, 461, 873, 1313, 1442
HgaI	GACGC	2 cut(s)	557, 626
HhaI	GCGC	4 cut(s)	262, 285, 335, 518
Hin1I	GRCGYC	2 cut(s)	260, 549
Hin6I	GCGC	4 cut(s)	260, 283, 333, 516
HinP1I	GCGC	4 cut(s)	260, 283, 333, 516
HincII	GTYRAC	2 cut(s)	1725, 1890
HindII	GTYRAC	2 cut(s)	1725, 1890
HindIII	AAGCTT	1 cut(s)	2074
HphI	GGTGA	4 cut(s)	133, 479, 743, 896
Hpy166II	GTNNAC	6 cut(s)	148, 349, 752, 961, 1725, 1890
Hpy188III	TCNNGA	8 cut(s)	406, 448, 725, 1114, 1428, 1828, 2018, 2153
Hpy8I	GTNNAC	6 cut(s)	148, 349, 752, 961, 1725, 1890
Hpy99I	CGWCG	3 cut(s)	155, 536, 551
HpyAV	CCTTC	7 cut(s)	599, 679, 707, 772, 794, 1432, 1475
HpyCH4III	ACNGT	7 cut(s)	145, 412, 532, 749, 756, 1120, 2285
HpyCH4IV	ACGT	3 cut(s)	324, 1701, 2204
HpyCH4V	TGCA	6 cut(s)	4, 524, 866, 1130, 1172, 2083
HpyF10VI	GCNNNNNNNGC	6 cut(s)	193, 266, 489, 513, 2124, 2258
HpyF3I	CTNAG	8 cut(s)	1406, 1473, 1748, 1796, 1807, 2111, 2151, 2309
HpySE526I	ACGT	3 cut(s)	324, 1701, 2204
Hsp92I	GRCGYC	2 cut(s)	260, 549
HspAI	GCGC	4 cut(s)	260, 283, 333, 516
KasI	GGCGCC	1 cut(s)	259
KroI	GCCGGC	2 cut(s)	95, 262
KroNI	GCCGGC	2 cut(s)	97, 264
Kzo9I	GATC	6 cut(s)	127, 1165, 1507, 1691, 1824, 2092
LmnI	GCTCC	7 cut(s)	179, 308, 472, 615, 2065, 2302, 2310
Lsp1109I	GCAGC	5 cut(s)	55, 774, 1483, 2102, 2261
LweI	GCATC	5 cut(s)	875, 1181, 1748, 1966, 2176
MaeI	CTAG	5 cut(s)	60, 1029, 1065, 1551, 2322
MaeII	ACGT	3 cut(s)	324, 1701, 2204
MaeIII	GTNAC	5 cut(s)	320, 638, 1155, 1392, 2434
MalI	GATC	6 cut(s)	129, 1167, 1509, 1693, 1826, 2094
MboI	GATC	6 cut(s)	127, 1165, 1507, 1691, 1824, 2092
MflI	RGATCY	1 cut(s)	2092
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	8 cut(s)	835, 1022, 1387, 1447, 1858, 2361, 2388, 2426
MluNI	TGGCCA	1 cut(s)	161
Mly113I	GGCGCC	1 cut(s)	260
MlyI	GAGTC	3 cut(s)	510, 803, 2218
MmeI	TCCRAC	4 cut(s)	330, 1001, 1062, 1843
Mox20I	TGGCCA	1 cut(s)	161
MreI	CGCCGGCG	2 cut(s)	95, 262
MroNI	GCCGGC	2 cut(s)	95, 262
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	4 cut(s)	468, 758, 2237, 2467
MslI	CAYNNNNRTG	3 cut(s)	970, 1931, 2375
Msp20I	TGGCCA	1 cut(s)	161
MvaI	CCWGG	4 cut(s)	1101, 1203, 1318, 2070
MvnI	CGCG	2 cut(s)	285, 335
MwoI	GCNNNNNNNGC	6 cut(s)	193, 266, 489, 513, 2124, 2258
NaeI	GCCGGC	2 cut(s)	97, 264
NarI	GGCGCC	1 cut(s)	260
NciI	CCSGG	7 cut(s)	257, 341, 385, 426, 427, 436, 1457
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	6 cut(s)	127, 1165, 1507, 1691, 1824, 2092
NgoMIV	GCCGGC	2 cut(s)	95, 262
NmeAIII	GCCGAG	1 cut(s)	519
NmuCI	GTSAC	2 cut(s)	320, 638
NspI	RCATGY	3 cut(s)	1213, 1344, 1532
PaeI	GCATGC	1 cut(s)	1213
PagI	TCATGA	2 cut(s)	1827, 2017
PaqCI	CACCTGC	2 cut(s)	219, 2436
PciI	ACATGT	2 cut(s)	1340, 1528
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 2323
PdiI	GCCGGC	2 cut(s)	97, 264
PflMI	CCANNNNNTGG	2 cut(s)	168, 1060
PfoI	TCCNGGA	1 cut(s)	1099
PkrI	GCNGC	8 cut(s)	45, 94, 268, 545, 764, 1498, 2117, 2251
PleI	GAGTC	3 cut(s)	509, 802, 2218
PluTI	GGCGCC	1 cut(s)	263
PmaCI	CACGTG	1 cut(s)	325
PmlI	CACGTG	1 cut(s)	325
PpsI	GAGTC	3 cut(s)	509, 802, 2218
Ppu21I	YACGTR	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	445
PscI	ACATGT	2 cut(s)	1340, 1528
Psp124BI	GAGCTC	2 cut(s)	477, 2307
Psp5II	RGGWCCY	1 cut(s)	445
Psp6I	CCWGG	4 cut(s)	1099, 1201, 1316, 2068
PspCI	CACGTG	1 cut(s)	325
PspGI	CCWGG	4 cut(s)	1099, 1201, 1316, 2068
PspOMI	GGGCCC	2 cut(s)	417, 1311
PspPPI	RGGWCCY	1 cut(s)	445
PstNI	CAGNNNCTG	1 cut(s)	504
PsuI	RGATCY	1 cut(s)	2092
RsaI	GTAC	3 cut(s)	1200, 1614, 2003
RsaNI	GTAC	3 cut(s)	1199, 1613, 2002
RseI	CAYNNNNRTG	3 cut(s)	970, 1931, 2375
SacI	GAGCTC	2 cut(s)	477, 2307
SaqAI	TTAA	4 cut(s)	468, 758, 2237, 2467
SatI	GCNGC	8 cut(s)	44, 93, 267, 544, 763, 1497, 2116, 2250
Sau3AI	GATC	6 cut(s)	127, 1165, 1507, 1691, 1824, 2092
SchI	GAGTC	3 cut(s)	510, 803, 2218
SfaNI	GCATC	5 cut(s)	875, 1181, 1748, 1966, 2176
SfoI	GGCGCC	1 cut(s)	261
SgrAI	CRCCGGYG	2 cut(s)	95, 262
SinI	GGWCC	2 cut(s)	445, 1559
SmaI	CCCGGG	1 cut(s)	427
SmiMI	CAYNNNNRTG	3 cut(s)	970, 1931, 2375
SpeI	ACTAGT	1 cut(s)	1550
SphI	GCATGC	1 cut(s)	1213
Sse9I	AATT	8 cut(s)	835, 1022, 1387, 1447, 1858, 2361, 2388, 2426
SspDI	GGCGCC	1 cut(s)	259
SspI	AATATT	1 cut(s)	1050
SspMI	CTAG	5 cut(s)	60, 1029, 1065, 1551, 2322
SstI	GAGCTC	2 cut(s)	477, 2307
StyI	CCWWGG	2 cut(s)	59, 87
TaaI	ACNGT	7 cut(s)	145, 412, 532, 749, 756, 1120, 2285
TaiI	ACGT	3 cut(s)	327, 1704, 2207
TaqI	TCGA	2 cut(s)	135, 622
TasI	AATT	8 cut(s)	835, 1022, 1387, 1447, 1858, 2361, 2388, 2426
TatI	WGTACW	2 cut(s)	1612, 2001
TauI	GCSGC	3 cut(s)	95, 269, 546
Tru1I	TTAA	4 cut(s)	468, 758, 2237, 2467
Tru9I	TTAA	4 cut(s)	468, 758, 2237, 2467
TscAI	CASTG	5 cut(s)	575, 859, 1498, 1717, 2377
TseFI	GTSAC	2 cut(s)	320, 638
TseI	GCWGC	5 cut(s)	43, 762, 1496, 2115, 2249
Tsp45I	GTSAC	2 cut(s)	320, 638
TspDTI	ATGAA	6 cut(s)	96, 618, 1166, 1322, 1599, 2396
TspGWI	ACGGA	2 cut(s)	1085, 1250
TspMI	CCCGGG	1 cut(s)	425
TspRI	CASTG	5 cut(s)	575, 859, 1498, 1717, 2377
Van91I	CCANNNNNTGG	2 cut(s)	168, 1060
VpaK11BI	GGWCC	2 cut(s)	445, 1559
XapI	RAATTY	2 cut(s)	1022, 2388
XceI	RCATGY	3 cut(s)	1213, 1344, 1532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1143
XmaI	CCCGGG	1 cut(s)	425
XmaJI	CCTAGG	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	960
XspI	CTAG	5 cut(s)	60, 1029, 1065, 1551, 2322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.