Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009955

Physical Location & Seq

Genomic Coordinates Reverse (-)

39274443 .. 39280695

Gene Structure 6253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG228600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2397 bp

ATGGCCGCCGGTGACACCTCATCTGTCTGGGACTGGGGCGATCTCCTCGACTTCACCGTCGACGACGACTTGGCCATCTCATGGGGCTCCGCCGACCCGCCCAACCCGCCCGAGGTCCACCACCTGCCCCCGCCGGACGACCCGCCGGAGAATCCGAATCCGGATCCGAATCCGAGCCCCCCAGCGCCGGCGGCAAGGATAAGGAAGCGCGACCCGAGGCTGGCGTGCTCCAACTTTCTGGCGGGTCACGTGCCGTGCGCGTGTCCGGAGGTGGACGAGAAAATGATGGAACTGGAGGAGGAGGAAGCCGGGCACGGGAAGAAGCGGGTCAGGACGGTTCGGGCCCCGCCCGGGACGGCCCGGTGTCAGGTCCCGACTTGTGGGGCCGACATTAAGGAGCTCAAAGGCTATCACCGCAGGCACAGAGTCTGCCTTGCCTGCGCCAATGCCACCACCGTCGTCCTCGGCGGCGACACCAAGCGTTATTGTCAGCAGTGTGGCAAGTTCCATGTCTTATCTGATTTTGATGAAGGTAAGCGGAGCTGTCGAAGAAAATTAGAGCGTCACAATAACAGAAGAAGAAGAAAACCGAGTGATTCAAAAGCAGGGAAGGAATCTCAAAGGGAAGTTCAAACTGAAGGTGGCACTCATGATGGTGAAGCAGGAGAAGACAGTTTACAGTTAAGCAGCCAGATAAATGAGAAGGAAGACTTGGTGGAGTCAGAAGGTGGGGGTATTTCTACCCTCTTTTCAATGCCTAATTCCCAGAATGTCGGCAGTGATGGTGTTGCATCGGCCCTGACTTCTGGTGATACCGAAATGGATGGAAGAAAACATGATTCCAATCACTCTCTTTCTCCGCCACAGTGTGACAACAAAAGTGTCTACTCATCTATGTGTCCGACAGGTCGTATCTCATTCAAGCTCTATGATTGGAATCCAGCAGAATTCCCTAGAAGACTTCGGCACCAAATATTCCAATGGTTGGCTAGTATGCCGGTTGAGTTGGAGGGGTATATCCGTCCTGGATGTATTATCTTGACTGTTTTTATTGCAATGCCAAAGTTTATGTGGATGAAGTTACTTGATGATCCTGCATCTTATCTACATAACTTTGTTATCGTACCTGGACGGATGCTATCGGGGAGGGGAAATATGCTTGTTTATCTCAATGACATGATTTTCCGTGTTGTAAAAGATGGGACTTCTGTAATAAAAGCCAAAGTGGAGGTGCGGGCCCCCAGGCTACATTATATTCATCCTACATGTTTTGAAGCAGGCAAGCCAATGGAGTTTTTTGTCTGTGGAAGTAATTTGTTACAACCCAAACTTAGGTTTCTTGTATCCTTCTCTGGAAAGTATCTGGCCGATAATTATGATCCGGAATCCTCTCATACTCAGATTGAAGGGGACAGCACTGCTGGTAATATAGATCATCAACTTTACAAGATACATGTGCCTCGTACAGAAGCAACTAGTTTTGGTCCTGCGTTTATTGAGGTTGAAAATGAATCTGGGTTATCAAACTTTTTACCTGTACTCATTGGGAACAAAGAGATTTGTGCTGAAATGGAGACTATTCAAAAAAGATTAGAAGAATCTCTTTTTGTGCGAGGATCATCAGACGTTTCTTTCAGTGGTTCTCTGTTGACCTCTTGTGAAGCATCTTCACTCAGACACAGAGCATTTTCTGAAGTTATTTTAGATATAGCATGGCTTCTTAGAAAGCCCTCCTCAGAAAATGTCCAACAGATCATGACTTCTTCACAGGCACAAAGATTCAATAATTTATTGAACTTATTGATATTCTTCAAGTCAACAACCATACTGGAGAAAGTGTTAGAAAATCTGAACACTCTGATGGATAATGTAGAGATAAACAACCCCGATAGTGGCAGTATTGATGCTGATATGAGGCTATTACAAAAGTACATGGATTGTGCTCGTGATATTCTTTGTCAAAAACTGCAAAGTTCTGGGGTTTCAGTTGTGGAGCCTGGAAGCTTGGTGCAGAAAGAGGATCTTATTTCTCAAAGTCTAAGCTGCTTTCAGAGCAAACAACATTTTCCCATACACACTCAGGATACAGAGATTATTGTAGATGGTAAGATGGATGCGATGTTGGGTTCAACGTCTAATGAGAGAAGTGAGACTCTTCCACTTTTAAACAAAAAAGCAGCCACGAAAGCCAACCTTATCAAACAGGCTAACTGTGGTATTTCTTCTGGGGAGCTCCTAAGCTCTCGCTCTAGGCGAATATTCTTGGGATTTCACCCCACTCTCTATGTAATTTCTGCCACAGCTATGTGTTTAGGAATTTGTGCGGTCGTCTTTCATCCGCACAAGGTTGGTGAATTAGCAGTAACAATACGCAGGTGTCTATTTGACAAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0035874 GO:0040008 GO:0042594 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046983 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071496 GO:0080090 GO:0120126 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

798

Amino Acids

88.6

Weight (kDa)

6.21

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	122 - 196	7.7e-28	SBP domain
Ig_SPL7	PF26102	410 - 525	6.8e-37	SPL7-like, immunoglobulin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18830 AT5G18830 AT5G18830
fragaria_vesca	FvH4_4g16910 FvH4_4g16910 FvH4_4g16910 FvH4_4g16910
malus_domestica	MD13G1175800.v1.1 MD16G1177600.v1.1
prunus_persica	Prupe.1G144600_v2.0.a1
pyrus_communis	pycom13g15150 pycom16g14900
rosa_chinensis	RchiOBHm_Chr4g0420491
rosa_laevigata	RLG00000007757
rosa_roxburghii	Rroxscaffold_5G00363110
rosa_rugosa	Rorug04G0164300
rosa_samantha	Rh4AG225900 Rh4BG228600 Rh4CG240200 Rh4DG224300
rosa_wichuraiana	Rw4G019500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	132, 2364
AasI	GACNNNNNNGTC	1 cut(s)	56
Acc36I	ACCTGC	2 cut(s)	132, 2364
AccB1I	GGYRCC	1 cut(s)	966
AccB7I	CCANNNNNTGG	2 cut(s)	81, 985
AccI	GTMKAC	2 cut(s)	60, 885
AccII	CGCG	2 cut(s)	210, 260
AccIII	TCCGGA	3 cut(s)	160, 265, 1381
AclWI	GGATC	6 cut(s)	158, 171, 1085, 1373, 1624, 2028
AcoI	YGGCCR	3 cut(s)	3, 72, 1365
AcsI	RAATTY	2 cut(s)	947, 2316
AcuI	CTGAAG	2 cut(s)	657, 1713
AcvI	CACGTG	1 cut(s)	250
AdeI	CACNNNGTG	1 cut(s)	869
AfaI	GTAC	4 cut(s)	1125, 1465, 1539, 1931
AflIII	ACRYGT	2 cut(s)	1265, 1453
AhlI	ACTAGT	1 cut(s)	1475
AjnI	CCWGG	4 cut(s)	1024, 1126, 1241, 1996
AjuI	GAANNNNNNNTTGG	2 cut(s)	695, 727
AluBI	AGCT	8 cut(s)	400, 543, 925, 2004, 2043, 2233, 2241, 2303
AluI	AGCT	8 cut(s)	400, 543, 925, 2004, 2043, 2233, 2241, 2303
Alw21I	GWGCWC	4 cut(s)	230, 402, 1945, 2235
Alw26I	GTCTC	2 cut(s)	1568, 2144
AlwI	GGATC	6 cut(s)	158, 171, 1085, 1373, 1624, 2028
AlwNI	CAGNNNCTG	1 cut(s)	429
Ama87I	CYCGRG	3 cut(s)	110, 214, 350
Aor13HI	TCCGGA	3 cut(s)	160, 265, 1381
AoxI	GGCC	8 cut(s)	3, 72, 342, 357, 384, 795, 1236, 1365
ApaI	GGGCCC	2 cut(s)	346, 1240
ApeKI	GCWGC	3 cut(s)	687, 2043, 2177
ApoI	RAATTY	2 cut(s)	947, 2316
AspLEI	GCGC	4 cut(s)	187, 210, 260, 443
AsuC2I	CCSGG	4 cut(s)	310, 351, 352, 361
AsuHPI	GGTGA	7 cut(s)	23, 46, 404, 668, 821, 2264, 2363
AvaI	CYCGRG	3 cut(s)	110, 214, 350
AvaII	GGWCC	3 cut(s)	115, 370, 1484
BaeGI	GKGCMC	3 cut(s)	315, 346, 1240
BalI	TGGCCA	1 cut(s)	74
BamHI	GGATCC	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	966
BanII	GRGCYC	6 cut(s)	89, 179, 346, 402, 1240, 2235
BarI	GAAGNNNNNNTAC	2 cut(s)	660, 692
BauI	CACGAG	1 cut(s)	1944
BbrPI	CACGTG	1 cut(s)	250
BbsI	GAAGAC	3 cut(s)	675, 714, 964
Bbv12I	GWGCWC	4 cut(s)	230, 402, 1945, 2235
BbvI	GCAGC	3 cut(s)	699, 2030, 2189
BccI	CCATC	9 cut(s)	83, 280, 647, 776, 818, 1193, 1855, 2096, 2104
BceAI	ACGGC	2 cut(s)	238, 372
BciT130I	CCWGG	4 cut(s)	1026, 1128, 1243, 1998
BciVI	GTATCC	2 cut(s)	1354, 2077
BcnI	CCSGG	4 cut(s)	310, 351, 352, 361
BcoDI	GTCTC	2 cut(s)	1568, 2144
BcuI	ACTAGT	1 cut(s)	1475
BfaI	CTAG	4 cut(s)	954, 990, 1476, 2250
BfoI	RGCGCY	1 cut(s)	188
BfuAI	ACCTGC	2 cut(s)	132, 2364
BfuI	GTATCC	2 cut(s)	1354, 2077
BisI	GCNGC	6 cut(s)	6, 192, 469, 688, 2044, 2178
BlsI	GCNGC	6 cut(s)	7, 193, 470, 689, 2045, 2179
Bme1390I	CCNGG	8 cut(s)	310, 351, 352, 361, 1026, 1128, 1243, 1998
Bme18I	GGWCC	3 cut(s)	115, 370, 1484
BmeT110I	CYCGRG	3 cut(s)	110, 214, 350
BmrFI	CCNGG	8 cut(s)	310, 351, 352, 361, 1026, 1128, 1243, 1998
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	6 cut(s)	800, 1106, 1125, 1673, 1894, 2104
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	3 cut(s)	675, 714, 964
BpmI	CTGGAG	2 cut(s)	314, 1850
Bpu10I	CCTNAGC	1 cut(s)	2237
BpuMI	CCSGG	4 cut(s)	310, 351, 352, 361
BsaAI	YACGTR	1 cut(s)	250
BsaBI	GATNNNNATC	3 cut(s)	168, 843, 936
BsaJI	CCNNGG	5 cut(s)	111, 215, 350, 463, 1241
BsaWI	WCCGGW	3 cut(s)	160, 265, 1381
BsaXI	ACNNNNNCTCC	2 cut(s)	1823, 1853
Bse118I	RCCGGY	3 cut(s)	8, 187, 997
Bse1I	ACTGG	3 cut(s)	38, 297, 1833
Bse3DI	GCAATG	1 cut(s)	1062
Bse8I	GATNNNNATC	3 cut(s)	168, 843, 936
BseAI	TCCGGA	3 cut(s)	160, 265, 1381
BseBI	CCWGG	4 cut(s)	1026, 1128, 1243, 1998
BseDI	CCNNGG	5 cut(s)	111, 215, 350, 463, 1241
BseGI	GGATG	7 cut(s)	829, 1034, 1080, 1140, 1258, 2119, 2335
BseJI	GATNNNNATC	3 cut(s)	168, 843, 936
BseMI	GCAATG	1 cut(s)	1062
BseMII	CTCAG	4 cut(s)	1412, 1687, 1749, 2093
BseNI	ACTGG	3 cut(s)	38, 297, 1833
BseRI	GAGGAG	4 cut(s)	35, 311, 314, 1723
BseSI	GKGCMC	3 cut(s)	315, 346, 1240
BseXI	GCAGC	3 cut(s)	699, 2030, 2189
BseYI	CCCAGC	1 cut(s)	181
BsgI	GTGCAG	1 cut(s)	2030
Bsh1236I	CGCG	2 cut(s)	210, 260
Bsh1285I	CGRYCG	1 cut(s)	2328
BshFI	GGCC	8 cut(s)	5, 74, 344, 359, 386, 797, 1238, 1367
BshNI	GGYRCC	1 cut(s)	966
BsiEI	CGRYCG	1 cut(s)	2328
BsiHKAI	GWGCWC	4 cut(s)	230, 402, 1945, 2235
BsiHKCI	CYCGRG	3 cut(s)	110, 214, 350
BslFI	GGGAC	5 cut(s)	44, 356, 367, 1216, 1424
BsmAI	GTCTC	2 cut(s)	1568, 2144
BsmFI	GGGAC	5 cut(s)	44, 356, 367, 1216, 1424
BsnI	GGCC	8 cut(s)	5, 74, 344, 359, 386, 797, 1238, 1367
BsoBI	CYCGRG	3 cut(s)	110, 214, 350
Bsp120I	GGGCCC	2 cut(s)	342, 1236
Bsp1286I	GDGCHC	9 cut(s)	89, 179, 230, 315, 346, 402, 1240, 1945, 2235
Bsp13I	TCCGGA	3 cut(s)	160, 265, 1381
Bsp143I	GATC	8 cut(s)	40, 163, 1090, 1378, 1432, 1616, 1752, 2020
BspANI	GGCC	8 cut(s)	5, 74, 344, 359, 386, 797, 1238, 1367
BspCNI	CTCAG	4 cut(s)	1411, 1686, 1748, 2092
BspEI	TCCGGA	3 cut(s)	160, 265, 1381
BspFNI	CGCG	2 cut(s)	210, 260
BspHI	TCATGA	2 cut(s)	649, 1755
BspMI	ACCTGC	2 cut(s)	132, 2364
BspPI	GGATC	6 cut(s)	158, 171, 1085, 1373, 1624, 2028
BspT107I	GGYRCC	1 cut(s)	966
BsrDI	GCAATG	1 cut(s)	1062
BsrFI	RCCGGY	3 cut(s)	8, 187, 997
BsrI	ACTGG	3 cut(s)	38, 297, 1833
BssAI	RCCGGY	3 cut(s)	8, 187, 997
BssECI	CCNNGG	5 cut(s)	111, 215, 350, 463, 1241
BssMI	GATC	8 cut(s)	40, 163, 1090, 1378, 1432, 1616, 1752, 2020
BssSI	CACGAG	1 cut(s)	1944
Bst2BI	CACGAG	1 cut(s)	1944
Bst2UI	CCWGG	4 cut(s)	1026, 1128, 1243, 1998
Bst4CI	ACNGT	8 cut(s)	58, 337, 457, 674, 681, 867, 1045, 2213
Bst6I	CTCTTC	1 cut(s)	2160
BstBAI	YACGTR	1 cut(s)	250
BstC8I	GCNNGC	8 cut(s)	189, 222, 226, 419, 439, 1236, 1279, 1283
BstDEI	CTNAG	8 cut(s)	1331, 1398, 1673, 1721, 1735, 2039, 2079, 2237
BstF5I	GGATG	7 cut(s)	829, 1034, 1080, 1140, 1258, 2119, 2335
BstFNI	CGCG	2 cut(s)	210, 260
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	4 cut(s)	187, 210, 260, 443
BstKTI	GATC	8 cut(s)	43, 166, 1093, 1381, 1435, 1619, 1755, 2023
BstMAI	GTCTC	2 cut(s)	1568, 2144
BstMBI	GATC	8 cut(s)	40, 163, 1090, 1378, 1432, 1616, 1752, 2020
BstMCI	CGRYCG	1 cut(s)	2328
BstMWI	GCNNNNNNNGC	6 cut(s)	106, 191, 414, 438, 2052, 2186
BstNI	CCWGG	4 cut(s)	1026, 1128, 1243, 1998
BstNSI	RCATGY	2 cut(s)	1269, 1457
BstSCI	CCNGG	8 cut(s)	308, 349, 350, 359, 1024, 1126, 1241, 1996
BstSLI	GKGCMC	3 cut(s)	315, 346, 1240
BstUI	CGCG	2 cut(s)	210, 260
BstV1I	GCAGC	3 cut(s)	699, 2030, 2189
BstV2I	GAAGAC	3 cut(s)	675, 714, 964
BstX2I	RGATCY	2 cut(s)	163, 2020
BstXI	CCANNNNNNTGG	1 cut(s)	238
BstYI	RGATCY	2 cut(s)	163, 2020
BsuI	GTATCC	2 cut(s)	1354, 2077
BsuRI	GGCC	8 cut(s)	5, 74, 344, 359, 386, 797, 1238, 1367
BtgZI	GCGATG	1 cut(s)	2132
BtsCI	GGATG	7 cut(s)	829, 1034, 1080, 1140, 1258, 2119, 2335
BtsI	GCAGTG	3 cut(s)	500, 784, 1416
BtsIMutI	CAGTG	5 cut(s)	500, 784, 872, 1416, 1642
BveI	ACCTGC	2 cut(s)	132, 2364
Cac8I	GCNNGC	8 cut(s)	189, 222, 226, 419, 439, 1236, 1279, 1283
CaiI	CAGNNNCTG	1 cut(s)	429
CciI	TCATGA	2 cut(s)	649, 1755
CfoI	GCGC	4 cut(s)	187, 210, 260, 443
Cfr10I	RCCGGY	3 cut(s)	8, 187, 997
Cfr9I	CCCGGG	1 cut(s)	350
CseI	GACGC	1 cut(s)	551
Csp6I	GTAC	4 cut(s)	1124, 1464, 1538, 1930
CviQI	GTAC	4 cut(s)	1124, 1464, 1538, 1930
DdeI	CTNAG	8 cut(s)	1331, 1398, 1673, 1721, 1735, 2039, 2079, 2237
DpnI	GATC	8 cut(s)	42, 165, 1092, 1380, 1434, 1618, 1754, 2022
DpnII	GATC	8 cut(s)	40, 163, 1090, 1378, 1432, 1616, 1752, 2020
DraI	TTTAAA	1 cut(s)	2166
DraIII	CACNNNGTG	1 cut(s)	869
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
EaeI	YGGCCR	3 cut(s)	3, 72, 1365
Eam1104I	CTCTTC	1 cut(s)	2160
EarI	CTCTTC	1 cut(s)	2160
EciI	GGCGGA	2 cut(s)	79, 849
Ecl136II	GAGCTC	2 cut(s)	400, 2233
Eco24I	GRGCYC	6 cut(s)	89, 179, 346, 402, 1240, 2235
Eco47I	GGWCC	3 cut(s)	115, 370, 1484
Eco53kI	GAGCTC	2 cut(s)	400, 2233
Eco57I	CTGAAG	2 cut(s)	657, 1713
Eco72I	CACGTG	1 cut(s)	250
Eco88I	CYCGRG	3 cut(s)	110, 214, 350
EcoICRI	GAGCTC	2 cut(s)	400, 2233
EcoO109I	RGGNCCY	3 cut(s)	343, 370, 1237
EcoRI	GAATTC	1 cut(s)	947
EcoRII	CCWGG	4 cut(s)	1024, 1126, 1241, 1996
EcoT38I	GRGCYC	6 cut(s)	89, 179, 346, 402, 1240, 2235
FalI	AAGNNNNNCTT	8 cut(s)	695, 727, 1587, 1619, 2007, 2039, 2178, 2210
FaqI	GGGAC	5 cut(s)	44, 356, 367, 1216, 1424
FauI	CCCGC	8 cut(s)	105, 114, 138, 150, 235, 318, 354, 1227
FblI	GTMKAC	2 cut(s)	60, 885
Fnu4HI	GCNGC	6 cut(s)	6, 192, 469, 688, 2044, 2178
FokI	GGATG	7 cut(s)	836, 1041, 1087, 1147, 1245, 2126, 2322
FriOI	GRGCYC	6 cut(s)	89, 179, 346, 402, 1240, 2235
Fsp4HI	GCNGC	6 cut(s)	6, 192, 469, 688, 2044, 2178
FspBI	CTAG	4 cut(s)	954, 990, 1476, 2250
GlaI	GCGC	4 cut(s)	186, 209, 259, 442
GluI	GCNGC	6 cut(s)	6, 192, 469, 688, 2044, 2178
GsaI	CCCAGC	1 cut(s)	185
GsuI	CTGGAG	2 cut(s)	314, 1850
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	8 cut(s)	5, 74, 344, 359, 386, 797, 1238, 1367
HgaI	GACGC	1 cut(s)	551
HhaI	GCGC	4 cut(s)	187, 210, 260, 443
Hin6I	GCGC	4 cut(s)	185, 208, 258, 441
HinP1I	GCGC	4 cut(s)	185, 208, 258, 441
HincII	GTYRAC	3 cut(s)	61, 1650, 1818
HindII	GTYRAC	3 cut(s)	61, 1650, 1818
HindIII	AAGCTT	1 cut(s)	2002
HphI	GGTGA	7 cut(s)	23, 46, 404, 668, 821, 2264, 2363
Hpy166II	GTNNAC	7 cut(s)	61, 118, 274, 677, 886, 1650, 1818
Hpy8I	GTNNAC	7 cut(s)	61, 118, 274, 677, 886, 1650, 1818
Hpy99I	CGWCG	4 cut(s)	62, 65, 68, 461
HpyAV	CCTTC	7 cut(s)	524, 604, 632, 697, 719, 1357, 1400
HpyCH4III	ACNGT	8 cut(s)	58, 337, 457, 674, 681, 867, 1045, 2213
HpyCH4IV	ACGT	3 cut(s)	249, 1626, 2132
HpyCH4V	TGCA	5 cut(s)	791, 1055, 1097, 1969, 2011
HpyF10VI	GCNNNNNNNGC	6 cut(s)	106, 191, 414, 438, 2052, 2186
HpyF3I	CTNAG	8 cut(s)	1331, 1398, 1673, 1721, 1735, 2039, 2079, 2237
HpySE526I	ACGT	3 cut(s)	249, 1626, 2132
HspAI	GCGC	4 cut(s)	185, 208, 258, 441
Kpn2I	TCCGGA	3 cut(s)	160, 265, 1381
KroI	GCCGGC	1 cut(s)	187
KroNI	GCCGGC	1 cut(s)	189
Kzo9I	GATC	8 cut(s)	40, 163, 1090, 1378, 1432, 1616, 1752, 2020
LmnI	GCTCC	7 cut(s)	92, 233, 397, 540, 1993, 2230, 2238
Lsp1109I	GCAGC	3 cut(s)	699, 2030, 2189
LweI	GCATC	6 cut(s)	800, 1106, 1125, 1673, 1894, 2104
MaeI	CTAG	4 cut(s)	954, 990, 1476, 2250
MaeII	ACGT	3 cut(s)	249, 1626, 2132
MaeIII	GTNAC	7 cut(s)	11, 245, 563, 869, 1080, 1317, 2362
MalI	GATC	8 cut(s)	42, 165, 1092, 1380, 1434, 1618, 1754, 2022
MboI	GATC	8 cut(s)	40, 163, 1090, 1378, 1432, 1616, 1752, 2020
MflI	RGATCY	2 cut(s)	163, 2020
MhlI	GDGCHC	9 cut(s)	89, 179, 230, 315, 346, 402, 1240, 1945, 2235
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	9 cut(s)	554, 760, 947, 1312, 1372, 1786, 2289, 2316, 2354
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	3 cut(s)	435, 728, 2146
MmeI	TCCRAC	4 cut(s)	255, 926, 987, 1771
Mox20I	TGGCCA	1 cut(s)	74
MreI	CGCCGGCG	1 cut(s)	187
MroI	TCCGGA	3 cut(s)	160, 265, 1381
MroNI	GCCGGC	1 cut(s)	187
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	4 cut(s)	393, 683, 2165, 2395
MslI	CAYNNNNRTG	4 cut(s)	654, 895, 1859, 2303
Msp20I	TGGCCA	1 cut(s)	74
MspR9I	CCNGG	8 cut(s)	310, 351, 352, 361, 1026, 1128, 1243, 1998
MvaI	CCWGG	4 cut(s)	1026, 1128, 1243, 1998
MvnI	CGCG	2 cut(s)	210, 260
MwoI	GCNNNNNNNGC	6 cut(s)	106, 191, 414, 438, 2052, 2186
NaeI	GCCGGC	1 cut(s)	189
NciI	CCSGG	4 cut(s)	310, 351, 352, 361
NdeII	GATC	8 cut(s)	40, 163, 1090, 1378, 1432, 1616, 1752, 2020
NgoMIV	GCCGGC	1 cut(s)	187
NmeAIII	GCCGAG	1 cut(s)	444
NmuCI	GTSAC	4 cut(s)	11, 245, 563, 869
NspI	RCATGY	2 cut(s)	1269, 1457
PagI	TCATGA	2 cut(s)	649, 1755
PaqCI	CACCTGC	2 cut(s)	132, 2364
PciI	ACATGT	2 cut(s)	1265, 1453
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 2251
PdiI	GCCGGC	1 cut(s)	189
PflMI	CCANNNNNTGG	2 cut(s)	81, 985
PfoI	TCCNGGA	1 cut(s)	1024
PkrI	GCNGC	6 cut(s)	7, 193, 470, 689, 2045, 2179
PleI	GAGTC	3 cut(s)	434, 727, 2146
PmaCI	CACGTG	1 cut(s)	250
PmlI	CACGTG	1 cut(s)	250
PpsI	GAGTC	3 cut(s)	434, 727, 2146
Ppu21I	YACGTR	1 cut(s)	250
PpuMI	RGGWCCY	1 cut(s)	370
PscI	ACATGT	2 cut(s)	1265, 1453
Psp124BI	GAGCTC	2 cut(s)	402, 2235
Psp5II	RGGWCCY	1 cut(s)	370
Psp6I	CCWGG	4 cut(s)	1024, 1126, 1241, 1996
PspCI	CACGTG	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	181
PspGI	CCWGG	4 cut(s)	1024, 1126, 1241, 1996
PspOMI	GGGCCC	2 cut(s)	342, 1236
PspPPI	RGGWCCY	1 cut(s)	370
PstNI	CAGNNNCTG	1 cut(s)	429
PsuI	RGATCY	2 cut(s)	163, 2020
RsaI	GTAC	4 cut(s)	1125, 1465, 1539, 1931
RsaNI	GTAC	4 cut(s)	1124, 1464, 1538, 1930
RseI	CAYNNNNRTG	4 cut(s)	654, 895, 1859, 2303
SacI	GAGCTC	2 cut(s)	402, 2235
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	4 cut(s)	393, 683, 2165, 2395
SatI	GCNGC	6 cut(s)	6, 192, 469, 688, 2044, 2178
Sau3AI	GATC	8 cut(s)	40, 163, 1090, 1378, 1432, 1616, 1752, 2020
SchI	GAGTC	3 cut(s)	435, 728, 2146
ScrFI	CCNGG	8 cut(s)	310, 351, 352, 361, 1026, 1128, 1243, 1998
SduI	GDGCHC	9 cut(s)	89, 179, 230, 315, 346, 402, 1240, 1945, 2235
SfaNI	GCATC	6 cut(s)	800, 1106, 1125, 1673, 1894, 2104
SgrAI	CRCCGGYG	2 cut(s)	8, 187
SgrDI	CGTCGACG	1 cut(s)	59
SinI	GGWCC	3 cut(s)	115, 370, 1484
SmaI	CCCGGG	1 cut(s)	352
SmiMI	CAYNNNNRTG	4 cut(s)	654, 895, 1859, 2303
SpeI	ACTAGT	1 cut(s)	1475
Sse9I	AATT	9 cut(s)	554, 760, 947, 1312, 1372, 1786, 2289, 2316, 2354
SspI	AATATT	2 cut(s)	975, 2259
SspMI	CTAG	4 cut(s)	954, 990, 1476, 2250
SstI	GAGCTC	2 cut(s)	402, 2235
StyD4I	CCNGG	8 cut(s)	308, 349, 350, 359, 1024, 1126, 1241, 1996
TaaI	ACNGT	8 cut(s)	58, 337, 457, 674, 681, 867, 1045, 2213
TaiI	ACGT	3 cut(s)	252, 1629, 2135
TaqI	TCGA	3 cut(s)	48, 60, 547
TasI	AATT	9 cut(s)	554, 760, 947, 1312, 1372, 1786, 2289, 2316, 2354
TatI	WGTACW	2 cut(s)	1537, 1929
TauI	GCSGC	3 cut(s)	8, 194, 471
Tru1I	TTAA	4 cut(s)	393, 683, 2165, 2395
Tru9I	TTAA	4 cut(s)	393, 683, 2165, 2395
TscAI	CASTG	5 cut(s)	500, 784, 872, 1423, 1642
TseFI	GTSAC	4 cut(s)	11, 245, 563, 869
TseI	GCWGC	3 cut(s)	687, 2043, 2177
Tsp45I	GTSAC	4 cut(s)	11, 245, 563, 869
TspDTI	ATGAA	5 cut(s)	543, 1091, 1247, 1524, 2324
TspGWI	ACGGA	3 cut(s)	1010, 1147, 1175
TspMI	CCCGGG	1 cut(s)	350
TspRI	CASTG	5 cut(s)	500, 784, 872, 1423, 1642
Van91I	CCANNNNNTGG	2 cut(s)	81, 985
VpaK11BI	GGWCC	3 cut(s)	115, 370, 1484
XapI	RAATTY	2 cut(s)	947, 2316
XceI	RCATGY	2 cut(s)	1269, 1457
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1068
XmaI	CCCGGG	1 cut(s)	350
XmiI	GTMKAC	2 cut(s)	60, 885
XspI	CTAG	4 cut(s)	954, 990, 1476, 2250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.