pycom13g15250

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0015284
Physical Location & Seq
Forward (+)
11106370 .. 11107579
1210 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1035 bp
ATGACGGATACCAGACCGAGGACCTCAACGACTCCGTTAAAACAGACTTCAAGTAGGCCCGACTGGTGCGAAAGACCCAGTCAACTTCGGACGGATAGCCTTTGGAAAATCAAAATGTGGCGGGCTCCCCACGCGGCAAGTATCGAAGGCGGGTGGAAACGTCATTTCCCTCCGGTCCTTGTCTATAAAACCCTCATTTCTCCACAACACAACACACATAAAACGGATTTGCAGAAAAAATATTTCAGAGCTATAAAACCTCCTCCCCCCACCCATGTGAGGAAGAAGAGGAGAATATGGGGACTGAGATCTTACGGCCTCAGGATTGTCTCATCGAAAGGATCAGAGTCCGTCCGGCGTTGTTTTCGCGCCGGAAGCTACTACTATGGGAGCCCCATCGCTAACCAGAATTACGTTTCTAACCCTAGATCTAGAAAGCCGGCAGTGCGATCCGAATCCAGGAGGATCCAGGTGCAGCCGGCGGATGCGGCGCCGGTCGCGAAGAGGTCCAGCTCCCACGACGACCTTCGGGGCTTCAAGATGGAGAAAGTCACGATCTTGCGGCGAGGAGAGTCGCTGGACTCGAAGATGAATGAAAAGGGTGGTTTGGCCGGGACCGGGACTGCGAGGCTCCGGCCCGGGCCGGATATGGTGCAGAAGCAGGTTCGGATTGTGGATCTGAGGTCTCCGGTGGGCGGTAAGACCGACATGTACGCCGGATCGGCGTTCGCGATGTCACCGGAGCCGAGCTCGCTCCCGTTGCCGTCGTTTTCGAGGAAGAAGCAGGTGTCGAAGGTCGTCGACGACGACTCAGGAAAACCCGGATCCGAGGACCCCAAGAAGAGGACCCTGAATGGATCCGATCTGATACGGTTCTGTCCTTTGTTGTCTGCTCGGTTTCGAGGTCGAATCGCTCCACGGGGGGGAATTAGTAAATTACCTACTGTTTGCGGGTACTTGGTAGCTTATGACCTTTTTGTCCGAAGGGAAATATTGTGGGGTTGTTATGGTAAATTAAAAGTTAGAATGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

345

Amino Acids

38.72

Weight (kDa)

10.69

Isoelectric Point (pI)

67.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNRC PF15365 238 - 257 6.5e-08 Proline-rich nuclear receptor coactivator motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21570
fragaria_vesca FvH4_4g16740
malus_domestica MD03G1009700.v1.1
prunus_persica Prupe.1G145900_v2.0.a1
pyrus_communis pycom02g14100 pycom13g15250 pycom16g15000
rosa_chinensis RchiOBHm_Chr4g0420321
rosa_laevigata RLG00000007774
rosa_multiflora Rmu_sc0001767.1_g000003
rosa_roxburghii Rroxscaffold_5G00362970
rosa_rugosa Rorug04G0163400
rosa_samantha Rh4BG227300 Rh4CG238500 Rh4DG222900
rosa_wichuraiana Rw4G019350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 775
AasI GACNNNNNNGTC 1 cut(s) 977
Acc36I ACCTGC 2 cut(s) 652, 775
AccB1I GGYRCC 1 cut(s) 490
AccI GTMKAC 1 cut(s) 801
AccII CGCG 4 cut(s) 134, 369, 500, 731
AciI CCGC 8 cut(s) 121, 134, 150, 482, 488, 562, 696, 951
AcoI YGGCCR 1 cut(s) 609
AcyI GRCGYC 1 cut(s) 491
AfaI GTAC 2 cut(s) 713, 956
AfiI CCNNNNNNNGG 7 cut(s) 18, 279, 459, 618, 695, 843, 923
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 2 cut(s) 51, 538
AjnI CCWGG 2 cut(s) 458, 468
AleI CACNNNNGTG 1 cut(s) 275
AluBI AGCT 5 cut(s) 251, 378, 513, 750, 965
AluI AGCT 5 cut(s) 251, 378, 513, 750, 965
Alw21I GWGCWC 1 cut(s) 752
Alw26I GTCTC 2 cut(s) 334, 690
Ama87I CYCGRG 1 cut(s) 638
AoxI GGCC 5 cut(s) 56, 316, 609, 635, 641
ApeKI GCWGC 1 cut(s) 475
AspLEI GCGC 2 cut(s) 371, 493
AspS9I GGNCC 9 cut(s) 21, 57, 175, 507, 615, 636, 641, 832, 846
AsuC2I CCSGG 5 cut(s) 613, 619, 639, 640, 822
AsuHPI GGTGA 1 cut(s) 729
AvaI CYCGRG 1 cut(s) 638
AvaII GGWCC 6 cut(s) 21, 175, 507, 615, 832, 846
AxyI CCTNAGG 1 cut(s) 320
BamHI GGATCC 3 cut(s) 465, 824, 857
BanI GGYRCC 1 cut(s) 490
BanII GRGCYC 3 cut(s) 127, 395, 752
Bbv12I GWGCWC 1 cut(s) 752
BbvI GCAGC 1 cut(s) 487
BccI CCATC 2 cut(s) 404, 535
BceAI ACGGC 2 cut(s) 331, 748
BciT130I CCWGG 2 cut(s) 460, 470
BcnI CCSGG 5 cut(s) 613, 619, 639, 640, 822
BcoDI GTCTC 2 cut(s) 334, 690
BfaI CTAG 2 cut(s) 426, 432
BfoI RGCGCY 1 cut(s) 494
BfuAI ACCTGC 2 cut(s) 652, 775
BglI GCCNNNNNGGC 1 cut(s) 722
BglII AGATCT 2 cut(s) 308, 428
BisI GCNGC 4 cut(s) 135, 476, 489, 563
BlsI GCNGC 4 cut(s) 136, 477, 490, 564
Bme1390I CCNGG 7 cut(s) 460, 470, 613, 619, 639, 640, 822
Bme18I GGWCC 6 cut(s) 21, 175, 507, 615, 832, 846
BmeT110I CYCGRG 1 cut(s) 638
BmgT120I GGNCC 9 cut(s) 21, 57, 175, 507, 615, 636, 641, 832, 846
BmrFI CCNGG 7 cut(s) 460, 470, 613, 619, 639, 640, 822
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 475
BmuI ACTGGG 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 734, 766
BpuMI CCSGG 5 cut(s) 613, 619, 639, 640, 822
BsaBI GATNNNNATC 1 cut(s) 454
BsaHI GRCGYC 1 cut(s) 491
BsaI GGTCTC 1 cut(s) 690
BsaJI CCNNGG 4 cut(s) 17, 638, 828, 917
BsaWI WCCGGW 3 cut(s) 172, 688, 739
Bsc4I CCNNNNNNNGG 7 cut(s) 18, 279, 459, 618, 695, 843, 923
Bse118I RCCGGY 3 cut(s) 439, 478, 493
Bse1I ACTGG 2 cut(s) 68, 78
Bse21I CCTNAGG 1 cut(s) 320
Bse8I GATNNNNATC 1 cut(s) 454
BseBI CCWGG 2 cut(s) 460, 470
BseDI CCNNGG 4 cut(s) 17, 638, 828, 917
BseGI GGATG 1 cut(s) 490
BseJI GATNNNNATC 1 cut(s) 454
BseLI CCNNNNNNNGG 7 cut(s) 18, 279, 459, 618, 695, 843, 923
BseMII CTCAG 4 cut(s) 296, 334, 671, 825
BseNI ACTGG 2 cut(s) 68, 78
BseRI GAGGAG 3 cut(s) 252, 304, 582
BseXI GCAGC 1 cut(s) 487
BsgI GTGCAG 2 cut(s) 494, 674
Bsh1236I CGCG 4 cut(s) 134, 369, 500, 731
Bsh1285I CGRYCG 1 cut(s) 498
BshFI GGCC 5 cut(s) 58, 318, 611, 637, 643
BshNI GGYRCC 1 cut(s) 490
BsiEI CGRYCG 1 cut(s) 498
BsiHKAI GWGCWC 1 cut(s) 752
BsiHKCI CYCGRG 1 cut(s) 638
BslFI GGGAC 3 cut(s) 315, 628, 634
BslI CCNNNNNNNGG 7 cut(s) 18, 279, 459, 618, 695, 843, 923
BsmAI GTCTC 2 cut(s) 334, 690
BsmFI GGGAC 3 cut(s) 315, 628, 634
BsnI GGCC 5 cut(s) 58, 318, 611, 637, 643
Bso31I GGTCTC 1 cut(s) 690
BsoBI CYCGRG 1 cut(s) 638
Bsp1286I GDGCHC 3 cut(s) 127, 395, 752
Bsp68I TCGCGA 2 cut(s) 500, 731
BspACI CCGC 8 cut(s) 121, 134, 150, 482, 488, 562, 696, 951
BspANI GGCC 5 cut(s) 58, 318, 611, 637, 643
BspCNI CTCAG 4 cut(s) 297, 333, 672, 824
BspFNI CGCG 4 cut(s) 134, 369, 500, 731
BspMI ACCTGC 2 cut(s) 652, 775
BspT107I GGYRCC 1 cut(s) 490
BspTNI GGTCTC 1 cut(s) 690
BsrFI RCCGGY 3 cut(s) 439, 478, 493
BsrI ACTGG 2 cut(s) 68, 78
BssAI RCCGGY 3 cut(s) 439, 478, 493
BssECI CCNNGG 4 cut(s) 17, 638, 828, 917
BssNI GRCGYC 1 cut(s) 491
Bst2UI CCWGG 2 cut(s) 460, 470
Bst4CI ACNGT 2 cut(s) 873, 946
Bst6I CTCTTC 3 cut(s) 281, 497, 836
BstACI GRCGYC 1 cut(s) 491
BstC8I GCNNGC 4 cut(s) 123, 441, 480, 752
BstDEI CTNAG 4 cut(s) 305, 320, 680, 811
BstDSI CCRYGG 1 cut(s) 917
BstF5I GGATG 1 cut(s) 490
BstFNI CGCG 4 cut(s) 134, 369, 500, 731
BstH2I RGCGCY 1 cut(s) 494
BstHHI GCGC 2 cut(s) 371, 493
BstMAI GTCTC 2 cut(s) 334, 690
BstMCI CGRYCG 1 cut(s) 498
BstMWI GCNNNNNNNGC 8 cut(s) 131, 375, 445, 488, 497, 722, 751, 760
BstNI CCWGG 2 cut(s) 460, 470
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 7 cut(s) 458, 468, 611, 617, 637, 638, 820
BstUI CGCG 4 cut(s) 134, 369, 500, 731
BstV1I GCAGC 1 cut(s) 487
BstX2I RGATCY 6 cut(s) 308, 428, 465, 676, 824, 857
BstYI RGATCY 6 cut(s) 308, 428, 465, 676, 824, 857
Bsu36I CCTNAGG 1 cut(s) 320
BsuRI GGCC 5 cut(s) 58, 318, 611, 637, 643
BtgI CCRYGG 1 cut(s) 917
BtgZI GCGATG 2 cut(s) 382, 746
BtsCI GGATG 1 cut(s) 490
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 450
BtuMI TCGCGA 2 cut(s) 500, 731
BveI ACCTGC 2 cut(s) 652, 775
Cac8I GCNNGC 4 cut(s) 123, 441, 480, 752
CfoI GCGC 2 cut(s) 371, 493
Cfr10I RCCGGY 3 cut(s) 439, 478, 493
Cfr13I GGNCC 9 cut(s) 21, 57, 175, 507, 615, 636, 641, 832, 846
Cfr9I CCCGGG 1 cut(s) 638
Csp6I GTAC 2 cut(s) 712, 955
CviAII CATG 2 cut(s) 275, 709
CviQI GTAC 2 cut(s) 712, 955
DdeI CTNAG 4 cut(s) 305, 320, 680, 811
DinI GGCGCC 1 cut(s) 492
DrdI GACNNNNNNGTC 1 cut(s) 977
DseDI GACNNNNNNGTC 1 cut(s) 977
EaeI YGGCCR 1 cut(s) 609
Eam1104I CTCTTC 3 cut(s) 281, 497, 836
EarI CTCTTC 3 cut(s) 281, 497, 836
EciI GGCGGA 1 cut(s) 497
Ecl136II GAGCTC 1 cut(s) 750
Eco24I GRGCYC 3 cut(s) 127, 395, 752
Eco31I GGTCTC 1 cut(s) 690
Eco47I GGWCC 6 cut(s) 21, 175, 507, 615, 832, 846
Eco53kI GAGCTC 1 cut(s) 750
Eco81I CCTNAGG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 638
EcoICRI GAGCTC 1 cut(s) 750
EcoO109I RGGNCCY 3 cut(s) 21, 832, 846
EcoRII CCWGG 2 cut(s) 458, 468
EcoT38I GRGCYC 3 cut(s) 127, 395, 752
EgeI GGCGCC 1 cut(s) 492
EheI GGCGCC 1 cut(s) 492
FaeI CATG 2 cut(s) 278, 712
FaqI GGGAC 3 cut(s) 315, 628, 634
FatI CATG 2 cut(s) 274, 708
FauI CCCGC 3 cut(s) 114, 143, 944
FblI GTMKAC 1 cut(s) 801
Fnu4HI GCNGC 4 cut(s) 135, 476, 489, 563
FokI GGATG 1 cut(s) 497
FriOI GRGCYC 3 cut(s) 127, 395, 752
Fsp4HI GCNGC 4 cut(s) 135, 476, 489, 563
FspBI CTAG 2 cut(s) 426, 432
GlaI GCGC 2 cut(s) 370, 492
GluI GCNGC 4 cut(s) 135, 476, 489, 563
HaeII RGCGCY 1 cut(s) 494
HaeIII GGCC 5 cut(s) 58, 318, 611, 637, 643
HhaI GCGC 2 cut(s) 371, 493
Hin1I GRCGYC 1 cut(s) 491
Hin1II CATG 2 cut(s) 278, 712
Hin6I GCGC 2 cut(s) 369, 491
HinP1I GCGC 2 cut(s) 369, 491
HincII GTYRAC 2 cut(s) 83, 802
HindII GTYRAC 2 cut(s) 83, 802
HinfI GANTC 7 cut(s) 31, 347, 455, 572, 581, 809, 909
HphI GGTGA 1 cut(s) 729
Hpy166II GTNNAC 2 cut(s) 83, 802
Hpy188III TCNNGA 7 cut(s) 322, 432, 499, 538, 553, 730, 813
Hpy8I GTNNAC 2 cut(s) 83, 802
Hpy99I CGWCG 5 cut(s) 524, 769, 803, 806, 809
HpyAV CCTTC 4 cut(s) 140, 536, 787, 978
HpyCH4III ACNGT 2 cut(s) 873, 946
HpyCH4IV ACGT 2 cut(s) 160, 414
HpyCH4V TGCA 3 cut(s) 232, 475, 655
HpyF10VI GCNNNNNNNGC 8 cut(s) 131, 375, 445, 488, 497, 722, 751, 760
HpyF3I CTNAG 4 cut(s) 305, 320, 680, 811
HpySE526I ACGT 2 cut(s) 160, 414
Hsp92I GRCGYC 1 cut(s) 491
Hsp92II CATG 2 cut(s) 278, 712
HspAI GCGC 2 cut(s) 369, 491
KasI GGCGCC 1 cut(s) 490
KroI GCCGGC 2 cut(s) 439, 478
KroNI GCCGGC 2 cut(s) 441, 480
LmnI GCTCC 7 cut(s) 130, 390, 518, 636, 742, 759, 919
Lsp1109I GCAGC 1 cut(s) 487
LweI GCATC 1 cut(s) 475
MaeI CTAG 2 cut(s) 426, 432
MaeII ACGT 2 cut(s) 160, 414
MaeIII GTNAC 2 cut(s) 550, 735
MboII GAAGA 6 cut(s) 295, 298, 514, 598, 790, 853
MflI RGATCY 6 cut(s) 308, 428, 465, 676, 824, 857
MhlI GDGCHC 3 cut(s) 127, 395, 752
MluCI AATT 4 cut(s) 409, 927, 935, 1013
Mly113I GGCGCC 1 cut(s) 491
MlyI GAGTC 5 cut(s) 25, 356, 575, 581, 803
MroNI GCCGGC 2 cut(s) 439, 478
MseI TTAA 2 cut(s) 38, 1016
MslI CAYNNNNRTG 1 cut(s) 275
MspR9I CCNGG 7 cut(s) 460, 470, 613, 619, 639, 640, 822
MvaI CCWGG 2 cut(s) 460, 470
MvnI CGCG 4 cut(s) 134, 369, 500, 731
MwoI GCNNNNNNNGC 8 cut(s) 131, 375, 445, 488, 497, 722, 751, 760
NaeI GCCGGC 2 cut(s) 441, 480
NarI GGCGCC 1 cut(s) 491
NciI CCSGG 5 cut(s) 613, 619, 639, 640, 822
NgoMIV GCCGGC 2 cut(s) 439, 478
NlaIII CATG 2 cut(s) 278, 712
NmeAIII GCCGAG 1 cut(s) 771
NmuCI GTSAC 2 cut(s) 550, 735
NruI TCGCGA 2 cut(s) 500, 731
NspI RCATGY 1 cut(s) 712
OliI CACNNNNGTG 1 cut(s) 275
PaqCI CACCTGC 1 cut(s) 775
PciI ACATGT 1 cut(s) 708
PcsI WCGNNNNNNNCGW 3 cut(s) 581, 728, 804
PdiI GCCGGC 2 cut(s) 441, 480
PfeI GAWTC 2 cut(s) 455, 909
PflFI GACNNNGTC 1 cut(s) 78
PfoI TCCNGGA 1 cut(s) 458
PkrI GCNGC 4 cut(s) 136, 477, 490, 564
PleI GAGTC 5 cut(s) 25, 355, 575, 580, 803
PluTI GGCGCC 1 cut(s) 494
PpsI GAGTC 5 cut(s) 25, 355, 575, 580, 803
PpuMI RGGWCCY 3 cut(s) 21, 832, 846
PscI ACATGT 1 cut(s) 708
Psp124BI GAGCTC 1 cut(s) 752
Psp5II RGGWCCY 3 cut(s) 21, 832, 846
Psp6I CCWGG 2 cut(s) 458, 468
PspGI CCWGG 2 cut(s) 458, 468
PspPI GGNCC 9 cut(s) 21, 57, 175, 507, 615, 636, 641, 832, 846
PspPPI RGGWCCY 3 cut(s) 21, 832, 846
PsuI RGATCY 6 cut(s) 308, 428, 465, 676, 824, 857
PsyI GACNNNGTC 1 cut(s) 78
RruI TCGCGA 2 cut(s) 500, 731
RsaI GTAC 2 cut(s) 713, 956
RsaNI GTAC 2 cut(s) 712, 955
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 752
SalI GTCGAC 1 cut(s) 800
SaqAI TTAA 2 cut(s) 38, 1016
SatI GCNGC 4 cut(s) 135, 476, 489, 563
Sau96I GGNCC 9 cut(s) 21, 57, 175, 507, 615, 636, 641, 832, 846
SchI GAGTC 5 cut(s) 25, 356, 575, 581, 803
ScrFI CCNGG 7 cut(s) 460, 470, 613, 619, 639, 640, 822
SduI GDGCHC 3 cut(s) 127, 395, 752
SfaNI GCATC 1 cut(s) 475
SfoI GGCGCC 1 cut(s) 492
SgrDI CGTCGACG 1 cut(s) 800
SinI GGWCC 6 cut(s) 21, 175, 507, 615, 832, 846
SmaI CCCGGG 1 cut(s) 640
SmiMI CAYNNNNRTG 1 cut(s) 275
SrfI GCCCGGGC 1 cut(s) 640
Sse9I AATT 4 cut(s) 409, 927, 935, 1013
SsiI CCGC 8 cut(s) 121, 134, 150, 482, 488, 562, 696, 951
SspDI GGCGCC 1 cut(s) 490
SspI AATATT 2 cut(s) 242, 993
SspMI CTAG 2 cut(s) 426, 432
SstI GAGCTC 1 cut(s) 752
StyD4I CCNGG 7 cut(s) 458, 468, 611, 617, 637, 638, 820
TaaI ACNGT 2 cut(s) 873, 946
TaiI ACGT 2 cut(s) 163, 417
TaqI TCGA 8 cut(s) 144, 335, 584, 773, 791, 801, 901, 907
TaqII GACCGA 2 cut(s) 31, 719
TasI AATT 4 cut(s) 409, 927, 935, 1013
TauI GCSGC 3 cut(s) 137, 491, 565
TfiI GAWTC 2 cut(s) 455, 909
Tru1I TTAA 2 cut(s) 38, 1016
Tru9I TTAA 2 cut(s) 38, 1016
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 2 cut(s) 550, 735
TseI GCWGC 1 cut(s) 475
Tsp45I GTSAC 2 cut(s) 550, 735
TspDTI ATGAA 2 cut(s) 605, 609
TspGWI ACGGA 5 cut(s) 20, 24, 107, 239, 340
TspMI CCCGGG 1 cut(s) 638
TspRI CASTG 1 cut(s) 450
Tth111I GACNNNGTC 1 cut(s) 78
VpaK11BI GGWCC 6 cut(s) 21, 175, 507, 615, 832, 846
XbaI TCTAGA 1 cut(s) 431
XceI RCATGY 1 cut(s) 712
XmaI CCCGGG 1 cut(s) 638
XmiI GTMKAC 1 cut(s) 801
XspI CTAG 2 cut(s) 426, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.