pycom13g17920

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012075
Physical Location & Seq
Forward (+)
13884333 .. 13887015
2683 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 969 bp
ATGTATATGTTTGTCGAGTCTCTTTCAAGAAAACAAGCCGTGGGCTTGGAGACAATTATTTATATTCAGCCCATCAAAACGACTCCGAAGTCGATAACTTTGACACCCCAATTATACATGCGGATACAAACCCAGTTCGACAAGAGCCCTATATACCAACTGCCAAAACTGAAATTTGAGATTCCCGGCACAACAAACACAGTTCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAAGAGGAAGGAAATGGACCGATACATCCTCAAAGCATTGGAAGGTGAATTTTTATGGTATGATGAGAGTCCTCCGGTAGTACAGAATCAAAGTGCTTTTGTGCCGTACACAAACAGACACATTAGTAATCAGCTCCCTAATGGTGTGACCAAATCCATGAACATGAACATGAGGATGCTGCAATTCTTGAGGAAAAGCTGGCAACCTGCAACTGCAAGAAATGAAGCTGGAGATGACGGCAAAGAACGGGGTTTTCGCCACATGATCAACGAGCGCATGAGGAGGGAGAAGCAGAAGCACTGCTACTTAGCCTTGCATTCTATGCTGCCCGCTGGAACCAGGAATGATAAGAATTGGATTGTGCAAATGGCAACAACGAATATTCAGCAGCTGAAGAGGTATGAGGAGGAGCTGAGAAAGAAGAACATGGAGCTTGAAACACTTCTGGTAGAAAATGAAAAGGAGGGAGTGAAATGGACAAAGATTAAATTAAGGGTGGCTAATCCTACATCGGGAATTGATTCTATGTTGGAGGTTCTTAAGTGCTTGCGACATTTGGGTTTGAAAGCCAGAAATATTAGCTCTAATTTCTCACTCGAGGAGTTTTCAGCAGAGCTGGAAATTGAGTCCAAGATTGGAGCCGCAGAGATAGAAGAGTTTGTACAAGAAACACTCTATGAAGCCGAGAGGAAATTGCATTTTCCATTTCCAGGAAGGTGA

Protein Analysis

323

Amino Acids

38.07

Weight (kDa)

9.47

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 169 - 215 1.2e-06 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43650 AT5G43650
fragaria_vesca FvH4_4g02610 FvH4_4g02610
malus_domestica MD13G1206900.v1.1 MD16G1208400.v1.1
prunus_persica Prupe.1G030500_v2.0.a1
pyrus_communis pycom13g17920 pycom16g17560
rosa_chinensis RchiOBHm_Chr4g0390311
rosa_laevigata RLG00000009925
rosa_multiflora Rmu_sc0010889.1_g000004
rosa_roxburghii Rroxscaffold_5G00336420
rosa_rugosa Rorug03G0330100
rosa_samantha Rh4AG031600 Rh4BG025600 Rh4CG034700 Rh4DG026700
rosa_wichuraiana Rw4G002510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 88
Acc36I ACCTGC 1 cut(s) 463
AciI CCGC 3 cut(s) 121, 579, 891
AcsI RAATTY 2 cut(s) 173, 296
AcuI CTGAAG 1 cut(s) 662
AfaI GTAC 3 cut(s) 330, 356, 912
AfiI CCNNNNNNNGG 2 cut(s) 761, 959
AflII CTTAAG 1 cut(s) 788
AgsI TTSAA 3 cut(s) 27, 686, 814
AjnI CCWGG 2 cut(s) 587, 958
AluBI AGCT 8 cut(s) 382, 447, 476, 640, 661, 682, 831, 865
AluI AGCT 8 cut(s) 382, 447, 476, 640, 661, 682, 831, 865
Alw26I GTCTC 2 cut(s) 24, 44
AlwNI CAGNNNCTG 1 cut(s) 640
Ama87I CYCGRG 1 cut(s) 845
ApeKI GCWGC 3 cut(s) 427, 574, 637
ApoI RAATTY 2 cut(s) 173, 296
Asp700I GAANNNNTTC 2 cut(s) 690, 769
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 1 cut(s) 265
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 845
AvaII GGWCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 149
BarI GAAGNNNNNNTAC 4 cut(s) 536, 568, 894, 926
BbvI GCAGC 3 cut(s) 414, 561, 649
BccI CCATC 1 cut(s) 80
BceAI ACGGC 3 cut(s) 23, 337, 502
BciT130I CCWGG 2 cut(s) 589, 960
BciVI GTATCC 1 cut(s) 117
BclI TGATCA 1 cut(s) 513
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 24, 44
BfrI CTTAAG 1 cut(s) 788
BfuAI ACCTGC 1 cut(s) 463
BfuI GTATCC 1 cut(s) 117
BisI GCNGC 4 cut(s) 428, 575, 638, 891
BlsI GCNGC 4 cut(s) 429, 576, 639, 892
Bme1390I CCNGG 3 cut(s) 186, 589, 960
Bme18I GGWCC 1 cut(s) 265
BmeT110I CYCGRG 1 cut(s) 845
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 2 cut(s) 586, 889
BmrFI CCNGG 3 cut(s) 186, 589, 960
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 414
BmuI ACTGGG 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 457
BpuMI CCSGG 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 2 cut(s) 761, 959
Bse1I ACTGG 1 cut(s) 133
BseBI CCWGG 2 cut(s) 589, 960
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 2 cut(s) 273, 429
BseLI CCNNNNNNNGG 2 cut(s) 761, 959
BseMII CTCAG 1 cut(s) 653
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 4 cut(s) 544, 668, 671, 863
BseXI GCAGC 3 cut(s) 414, 561, 649
BsiHKCI CYCGRG 1 cut(s) 845
BsiSI CCGG 2 cut(s) 186, 323
BslI CCNNNNNNNGG 2 cut(s) 761, 959
BsmAI GTCTC 2 cut(s) 24, 44
BsmI GAATGC 1 cut(s) 565
BsoBI CYCGRG 1 cut(s) 845
Bsp1286I GDGCHC 1 cut(s) 149
Bsp1407I TGTACA 1 cut(s) 910
Bsp143I GATC 1 cut(s) 513
BspACI CCGC 3 cut(s) 121, 579, 891
BspCNI CTCAG 1 cut(s) 654
BspLI GGNNCC 2 cut(s) 586, 889
BspMI ACCTGC 1 cut(s) 463
BspTI CTTAAG 1 cut(s) 788
BsrGI TGTACA 1 cut(s) 910
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 589, 960
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 3 cut(s) 245, 638, 897
BstAFI CTTAAG 1 cut(s) 788
BstAPI GCANNNNNTGC 1 cut(s) 571
BstAUI TGTACA 1 cut(s) 910
BstC8I GCNNGC 3 cut(s) 449, 579, 797
BstDEI CTNAG 2 cut(s) 556, 662
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 2 cut(s) 273, 429
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 1 cut(s) 516
BstMAI GTCTC 2 cut(s) 24, 44
BstMBI GATC 1 cut(s) 513
BstMWI GCNNNNNNNGC 1 cut(s) 571
BstNI CCWGG 2 cut(s) 589, 960
BstNSI RCATGY 1 cut(s) 121
BstSCI CCNGG 3 cut(s) 184, 587, 958
BstV1I GCAGC 3 cut(s) 414, 561, 649
BsuI GTATCC 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 39
BtsCI GGATG 2 cut(s) 273, 429
BtsI GCAGTG 1 cut(s) 547
BtsIMutI CAGTG 1 cut(s) 547
BveI ACCTGC 1 cut(s) 463
Cac8I GCNNGC 3 cut(s) 449, 579, 797
CaiI CAGNNNCTG 1 cut(s) 640
CfoI GCGC 1 cut(s) 525
Cfr13I GGNCC 1 cut(s) 265
Csp6I GTAC 3 cut(s) 329, 355, 911
CviAII CATG 7 cut(s) 118, 406, 412, 418, 511, 526, 676
CviQI GTAC 3 cut(s) 329, 355, 911
DdeI CTNAG 2 cut(s) 556, 662
DpnI GATC 1 cut(s) 515
DpnII GATC 1 cut(s) 513
DrdI GACNNNNNNGTC 1 cut(s) 88
DseDI GACNNNNNNGTC 1 cut(s) 88
Eam1104I CTCTTC 3 cut(s) 245, 638, 897
EarI CTCTTC 3 cut(s) 245, 638, 897
Eco24I GRGCYC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 662
Eco88I CYCGRG 1 cut(s) 845
EcoRII CCWGG 2 cut(s) 587, 958
EcoT38I GRGCYC 1 cut(s) 149
FaeI CATG 7 cut(s) 121, 409, 415, 421, 514, 529, 679
FatI CATG 7 cut(s) 117, 405, 411, 417, 510, 525, 675
FauI CCCGC 1 cut(s) 586
FbaI TGATCA 1 cut(s) 513
Fnu4HI GCNGC 4 cut(s) 428, 575, 638, 891
FokI GGATG 2 cut(s) 260, 436
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 4 cut(s) 428, 575, 638, 891
GlaI GCGC 1 cut(s) 524
GluI GCNGC 4 cut(s) 428, 575, 638, 891
GsuI CTGGAG 1 cut(s) 498
HapII CCGG 2 cut(s) 186, 323
HhaI GCGC 1 cut(s) 525
Hin1II CATG 7 cut(s) 121, 409, 415, 421, 514, 529, 679
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HinfI GANTC 7 cut(s) 17, 82, 181, 316, 334, 770, 875
HpaII CCGG 2 cut(s) 186, 323
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 2 cut(s) 205, 357
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 3 cut(s) 27, 436, 762
Hpy8I GTNNAC 2 cut(s) 205, 357
HpyAV CCTTC 3 cut(s) 250, 284, 957
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 6 cut(s) 430, 458, 464, 565, 613, 946
HpyF10VI GCNNNNNNNGC 1 cut(s) 571
HpyF3I CTNAG 2 cut(s) 556, 662
Hsp92II CATG 7 cut(s) 121, 409, 415, 421, 514, 529, 679
HspAI GCGC 1 cut(s) 523
Ksp22I TGATCA 1 cut(s) 513
Kzo9I GATC 1 cut(s) 513
LmnI GCTCC 4 cut(s) 387, 658, 679, 887
Lsp1109I GCAGC 3 cut(s) 414, 561, 649
LweI GCATC 1 cut(s) 414
MaeIII GTNAC 1 cut(s) 394
MalI GATC 1 cut(s) 515
MboI GATC 1 cut(s) 513
MboII GAAGA 5 cut(s) 259, 262, 655, 682, 914
MhlI GDGCHC 1 cut(s) 149
MlyI GAGTC 4 cut(s) 26, 76, 325, 884
MmeI TCCRAC 1 cut(s) 759
MroXI GAANNNNTTC 2 cut(s) 690, 769
MseI TTAA 3 cut(s) 735, 740, 789
MslI CAYNNNNRTG 3 cut(s) 410, 416, 422
MspA1I CMGCKG 2 cut(s) 581, 640
MspCI CTTAAG 1 cut(s) 788
MspI CCGG 2 cut(s) 186, 323
MspR9I CCNGG 3 cut(s) 186, 589, 960
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 2 cut(s) 589, 960
MwoI GCNNNNNNNGC 1 cut(s) 571
NciI CCSGG 1 cut(s) 186
NdeII GATC 1 cut(s) 513
NlaIII CATG 7 cut(s) 121, 409, 415, 421, 514, 529, 679
NlaIV GGNNCC 2 cut(s) 586, 889
NmeAIII GCCGAG 1 cut(s) 958
NmuCI GTSAC 1 cut(s) 394
NspI RCATGY 1 cut(s) 121
PaeR7I CTCGAG 1 cut(s) 845
PctI GAATGC 1 cut(s) 565
PdmI GAANNNNTTC 2 cut(s) 690, 769
PfeI GAWTC 3 cut(s) 181, 334, 770
PfoI TCCNGGA 1 cut(s) 958
PkrI GCNGC 4 cut(s) 429, 576, 639, 892
PleI GAGTC 4 cut(s) 25, 76, 324, 883
PpsI GAGTC 4 cut(s) 25, 76, 324, 883
Psp6I CCWGG 2 cut(s) 587, 958
PspGI CCWGG 2 cut(s) 587, 958
PspN4I GGNNCC 2 cut(s) 586, 889
PspPI GGNCC 1 cut(s) 265
PspXI VCTCGAGB 1 cut(s) 845
PstNI CAGNNNCTG 1 cut(s) 640
PvuII CAGCTG 1 cut(s) 640
RsaI GTAC 3 cut(s) 330, 356, 912
RsaNI GTAC 3 cut(s) 329, 355, 911
RseI CAYNNNNRTG 3 cut(s) 410, 416, 422
SaqAI TTAA 3 cut(s) 735, 740, 789
SatI GCNGC 4 cut(s) 428, 575, 638, 891
Sau3AI GATC 1 cut(s) 513
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 4 cut(s) 26, 76, 325, 884
ScrFI CCNGG 3 cut(s) 186, 589, 960
SduI GDGCHC 1 cut(s) 149
SfaNI GCATC 1 cut(s) 414
Sfr274I CTCGAG 1 cut(s) 845
SinI GGWCC 1 cut(s) 265
SlaI CTCGAG 1 cut(s) 845
SmiMI CAYNNNNRTG 3 cut(s) 410, 416, 422
SmlI CTYRAG 3 cut(s) 436, 788, 845
SmoI CTYRAG 3 cut(s) 436, 788, 845
SsiI CCGC 3 cut(s) 121, 579, 891
SspI AATATT 2 cut(s) 631, 826
StyD4I CCNGG 3 cut(s) 184, 587, 958
TaaI ACNGT 1 cut(s) 202
TaqI TCGA 4 cut(s) 15, 92, 138, 846
TaqII GACCGA 1 cut(s) 282
TatI WGTACW 2 cut(s) 328, 910
TauI GCSGC 1 cut(s) 893
TfiI GAWTC 3 cut(s) 181, 334, 770
Tru1I TTAA 3 cut(s) 735, 740, 789
Tru9I TTAA 3 cut(s) 735, 740, 789
TscAI CASTG 1 cut(s) 554
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 3 cut(s) 427, 574, 637
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 5 cut(s) 422, 428, 486, 720, 942
TspRI CASTG 1 cut(s) 554
Vha464I CTTAAG 1 cut(s) 788
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 2 cut(s) 173, 296
XceI RCATGY 1 cut(s) 121
XhoI CTCGAG 1 cut(s) 845
XmnI GAANNNNTTC 2 cut(s) 690, 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.