Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011485

Physical Location & Seq

Genomic Coordinates Reverse (-)

15453333 .. 15456437

Gene Structure 3105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGTATATTTTGGTTATAAAGAGCGGTGGTAGAGAGAGAACTAACATAGGAAAGGAAAATAAGAAAGAAAAGTCGTCCTCCCAGACCCCCAGCCAGCTAGTATTAGGTTCTGTGTGGCAAGAAATGCAAACACCACCTTATTTTGGGGAGCAAGATGTGGCGCGATGTGAGAAATGCATGCAAATCTTGTATCACGCCCTTCTTACACGTGGCCACACCATGCACTTGGGCTCATGCGGGCCTTCCCAACGGGTCCAGCCAGCGCATAAAACGCAAGCCCGCGGATCCTCCAAATATAAAGACCCGATTCCAAAACCGCTGCCTCTCTCATTTCTCCTCCTTCCAATCAACAGAACCCAGACGCTCAAGCGAATCAAAAGCTTTCCACAAGTGACAACAATGGCGACAGAGATTGCAGCAGCGGCGCCGCCACCAGCGGTAGACACAGAGGAGAATATTTCTGCGGCGGTGGCCGCCGATACCAAGATACAGGCAAGCAGCGGTCCCCACAAGCTGGAGAGAAAGTGGACCTTTTGGTTCGATAACCAATCCAAGCCCAAGCAAGGCGCTGCGTGGGGCTCCTCCCTCCGCAAAGCCTACACCTTCGATACCGTCCAGGAGTTCTGGTGTCTGTACGATCAGGTATTCAAGCCAAGCAAGTTGACACCGAATGCAGACTTTCACTTGTTCCGGGCTGGAGTTGAACCGAAATGGGAGGATCCCGAGTGTGCTAGTGGAGGGAAGTGGACCGTCATCAGCAGCAGGAAGGCCAACCTTGATACCATGTGGCTAGAGACTTTGATGGCACTGATAGGGGAGCAATTTGATGAGGCGGATGAGATTTGTGGAGTGGTAGCAAGTGTGCGCCAGAGGCAGGACAAACTTGCACTATGGACTAGGAATGCTGCAAACGAAGCTGCACAGATGAGCATTGGGAGAAAGTGGAAGGAGATAATCGATGTTACCGATAAGATGACCTACAGCTTCCACGACGATTCCAAAAGGGAAAGATCGGCAAAGCCTCGATACAATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000340 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005845 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0010467 GO:0019538 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032991 GO:0034518 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080134 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910

Pfam Domains

Protein Families

IF4E

Protein Analysis

346

Amino Acids

38.92

Weight (kDa)

9.22

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF4E	PF01652	171 - 327	1.7e-55	Eukaryotic initiation factor 4E

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35620 AT5G35620 AT5G35620
fragaria_vesca	FvH4_4g04440
malus_domestica	MD13G1219900.v1.1 MD16G1225300.v1.1
prunus_persica	Prupe.1G046600_v2.0.a1 Prupe.1G046600_v2.0.a1
pyrus_communis	pycom13g19450 pycom16g18820
rosa_chinensis	RchiOBHm_Chr4g0395001
rosa_laevigata	RLG00000009651
rosa_multiflora	Rmu_sc0005802.1_g000033
rosa_roxburghii	Rroxscaffold_5G00339980
rosa_rugosa	Rorug03G0360100.1
rosa_samantha	Rh4AG056400 Rh4BG055100 Rh4CG061000 Rh4DG052600
rosa_wichuraiana	Rw4G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	424
AccB7I	CCANNNNNTGG	1 cut(s)	514
AccBSI	CCGCTC	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	2 cut(s)	163, 282
AclWI	GGATC	4 cut(s)	279, 292, 713, 726
AcoI	YGGCCR	2 cut(s)	211, 471
AcvI	CACGTG	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	425
AfaI	GTAC	1 cut(s)	635
AfiI	CCNNNNNNNGG	4 cut(s)	143, 514, 563, 874
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	649, 704
AjnI	CCWGG	1 cut(s)	615
AluBI	AGCT	5 cut(s)	97, 381, 514, 917, 984
AluI	AGCT	5 cut(s)	97, 381, 514, 917, 984
Alw26I	GTCTC	1 cut(s)	788
AlwI	GGATC	4 cut(s)	279, 292, 713, 726
Ama87I	CYCGRG	1 cut(s)	722
AoxI	GGCC	4 cut(s)	211, 239, 471, 768
ApeKI	GCWGC	8 cut(s)	319, 416, 419, 498, 569, 759, 905, 917
AspLEI	GCGC	5 cut(s)	163, 265, 427, 569, 867
AspS9I	GGNCC	5 cut(s)	239, 253, 503, 528, 747
AsuC2I	CCSGG	1 cut(s)	692
AvaI	CYCGRG	1 cut(s)	722
AvaII	GGWCC	4 cut(s)	253, 503, 528, 747
BalI	TGGCCA	1 cut(s)	213
BamHI	GGATCC	2 cut(s)	284, 718
BanI	GGYRCC	1 cut(s)	424
BanII	GRGCYC	2 cut(s)	233, 581
BbrPI	CACGTG	1 cut(s)	209
BbvI	GCAGC	8 cut(s)	306, 428, 431, 510, 556, 771, 892, 904
BccI	CCATC	1 cut(s)	796
BciT130I	CCWGG	1 cut(s)	617
BcnI	CCSGG	1 cut(s)	692
BcoDI	GTCTC	1 cut(s)	788
BfaI	CTAG	4 cut(s)	98, 732, 791, 897
BfmI	CTRYAG	1 cut(s)	979
BfoI	RGCGCY	2 cut(s)	428, 570
Bme1390I	CCNGG	2 cut(s)	617, 692
Bme18I	GGWCC	4 cut(s)	253, 503, 528, 747
BmeT110I	CYCGRG	1 cut(s)	722
BmgT120I	GGNCC	5 cut(s)	239, 253, 503, 528, 747
BmiI	GGNNCC	6 cut(s)	254, 286, 426, 505, 580, 720
BmrFI	CCNGG	2 cut(s)	617, 692
BpmI	CTGGAG	2 cut(s)	536, 717
BpuEI	CTTGAG	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	692
Bsa29I	ATCGAT	1 cut(s)	957
BsaAI	YACGTR	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	280
BsaXI	ACNNNNNCTCC	4 cut(s)	509, 539, 611, 641
Bsc4I	CCNNNNNNNGG	4 cut(s)	143, 514, 563, 874
BseBI	CCWGG	1 cut(s)	617
BseCI	ATCGAT	1 cut(s)	957
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	841
BseLI	CCNNNNNNNGG	4 cut(s)	143, 514, 563, 874
BseRI	GAGGAG	3 cut(s)	326, 464, 571
BseXI	GCAGC	8 cut(s)	306, 428, 431, 510, 556, 771, 892, 904
BseYI	CCCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	903
Bsh1236I	CGCG	2 cut(s)	163, 282
BshFI	GGCC	4 cut(s)	213, 241, 473, 770
BshNI	GGYRCC	1 cut(s)	424
BshVI	ATCGAT	1 cut(s)	957
BsiHKCI	CYCGRG	1 cut(s)	722
BsiSI	CCGG	1 cut(s)	691
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	4 cut(s)	143, 514, 563, 874
BsmAI	GTCTC	1 cut(s)	788
BsmFI	GGGAC	1 cut(s)	489
BsmI	GAATGC	2 cut(s)	676, 907
BsnI	GGCC	4 cut(s)	213, 241, 473, 770
BsoBI	CYCGRG	1 cut(s)	722
Bsp1286I	GDGCHC	2 cut(s)	233, 581
Bsp143I	GATC	4 cut(s)	284, 637, 718, 1010
BspANI	GGCC	4 cut(s)	213, 241, 473, 770
BspDI	ATCGAT	1 cut(s)	957
BspFNI	CGCG	2 cut(s)	163, 282
BspLI	GGNNCC	6 cut(s)	254, 286, 426, 505, 580, 720
BspPI	GGATC	4 cut(s)	279, 292, 713, 726
BspT107I	GGYRCC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	4 cut(s)	284, 637, 718, 1010
BssNI	GRCGYC	1 cut(s)	425
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	2 cut(s)	613, 751
BstACI	GRCGYC	1 cut(s)	425
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	7 cut(s)	95, 179, 239, 261, 276, 280, 496
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	1 cut(s)	841
BstFNI	CGCG	2 cut(s)	163, 282
BstH2I	RGCGCY	2 cut(s)	428, 570
BstHHI	GCGC	5 cut(s)	163, 265, 427, 569, 867
BstKTI	GATC	4 cut(s)	287, 640, 721, 1013
BstMAI	GTCTC	1 cut(s)	788
BstMBI	GATC	4 cut(s)	284, 637, 718, 1010
BstMWI	GCNNNNNNNGC	7 cut(s)	124, 271, 422, 470, 473, 871, 914
BstNI	CCWGG	1 cut(s)	617
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	615, 690
BstSFI	CTRYAG	1 cut(s)	979
BstUI	CGCG	2 cut(s)	163, 282
BstV1I	GCAGC	8 cut(s)	306, 428, 431, 510, 556, 771, 892, 904
BstX2I	RGATCY	2 cut(s)	284, 718
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	2 cut(s)	284, 718
Bsu15I	ATCGAT	1 cut(s)	957
BsuRI	GGCC	4 cut(s)	213, 241, 473, 770
BsuTUI	ATCGAT	1 cut(s)	957
BtgI	CCRYGG	1 cut(s)	280
BtgZI	GCGATG	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	841
BtsIMutI	CAGTG	1 cut(s)	806
Cac8I	GCNNGC	7 cut(s)	95, 179, 239, 261, 276, 280, 496
CfoI	GCGC	5 cut(s)	163, 265, 427, 569, 867
Cfr13I	GGNCC	5 cut(s)	239, 253, 503, 528, 747
Cfr42I	CCGCGG	1 cut(s)	283
ClaI	ATCGAT	1 cut(s)	957
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	634
CviAII	CATG	4 cut(s)	178, 220, 234, 784
CviQI	GTAC	1 cut(s)	634
DinI	GGCGCC	1 cut(s)	426
DpnI	GATC	4 cut(s)	286, 639, 720, 1012
DpnII	GATC	4 cut(s)	284, 637, 718, 1010
EaeI	YGGCCR	2 cut(s)	211, 471
EciI	GGCGGA	1 cut(s)	848
Eco24I	GRGCYC	2 cut(s)	233, 581
Eco47I	GGWCC	4 cut(s)	253, 503, 528, 747
Eco72I	CACGTG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	722
EcoRII	CCWGG	1 cut(s)	615
EcoT22I	ATGCAT	1 cut(s)	179
EcoT38I	GRGCYC	2 cut(s)	233, 581
EgeI	GGCGCC	1 cut(s)	426
EheI	GGCGCC	1 cut(s)	426
FaeI	CATG	4 cut(s)	181, 223, 237, 787
FalI	AAGNNNNNCTT	2 cut(s)	515, 547
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	4 cut(s)	177, 219, 233, 783
FauI	CCCGC	2 cut(s)	230, 287
FblI	GTMKAC	1 cut(s)	441
FokI	GGATG	1 cut(s)	848
FriOI	GRGCYC	2 cut(s)	233, 581
FspBI	CTAG	4 cut(s)	98, 732, 791, 897
GlaI	GCGC	5 cut(s)	162, 264, 426, 568, 866
GsaI	CCCAGC	1 cut(s)	93
GsuI	CTGGAG	2 cut(s)	536, 717
HaeII	RGCGCY	2 cut(s)	428, 570
HaeIII	GGCC	4 cut(s)	213, 241, 473, 770
HapII	CCGG	1 cut(s)	691
HgaI	GACGC	1 cut(s)	370
HhaI	GCGC	5 cut(s)	163, 265, 427, 569, 867
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	4 cut(s)	181, 223, 237, 787
Hin6I	GCGC	5 cut(s)	161, 263, 425, 567, 865
HinP1I	GCGC	5 cut(s)	161, 263, 425, 567, 865
HincII	GTYRAC	1 cut(s)	663
HindII	GTYRAC	1 cut(s)	663
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	3 cut(s)	307, 372, 995
HpaII	CCGG	1 cut(s)	691
Hpy166II	GTNNAC	4 cut(s)	442, 528, 663, 747
Hpy188III	TCNNGA	1 cut(s)	722
Hpy8I	GTNNAC	4 cut(s)	442, 528, 663, 747
Hpy99I	CGWCG	1 cut(s)	995
HpyAV	CCTTC	6 cut(s)	209, 252, 350, 613, 760, 940
HpyCH4III	ACNGT	2 cut(s)	613, 751
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	9 cut(s)	127, 177, 181, 223, 416, 674, 887, 908, 920
HpyF10VI	GCNNNNNNNGC	7 cut(s)	124, 271, 422, 470, 473, 871, 914
HpySE526I	ACGT	1 cut(s)	208
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	4 cut(s)	181, 223, 237, 787
HspAI	GCGC	5 cut(s)	161, 263, 425, 567, 865
KasI	GGCGCC	1 cut(s)	424
KspI	CCGCGG	1 cut(s)	283
Kzo9I	GATC	4 cut(s)	284, 637, 718, 1010
LmnI	GCTCC	3 cut(s)	148, 584, 817
Lsp1109I	GCAGC	8 cut(s)	306, 428, 431, 510, 556, 771, 892, 904
MaeI	CTAG	4 cut(s)	98, 732, 791, 897
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	2 cut(s)	391, 961
MalI	GATC	4 cut(s)	286, 639, 720, 1012
MbiI	CCGCTC	1 cut(s)	24
MboI	GATC	4 cut(s)	284, 637, 718, 1010
MflI	RGATCY	2 cut(s)	284, 718
MhlI	GDGCHC	2 cut(s)	233, 581
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	1 cut(s)	821
MluNI	TGGCCA	1 cut(s)	213
Mly113I	GGCGCC	1 cut(s)	425
Mox20I	TGGCCA	1 cut(s)	213
Mph1103I	ATGCAT	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	213
Msp20I	TGGCCA	1 cut(s)	213
MspA1I	CMGCKG	5 cut(s)	282, 319, 422, 437, 501
MspI	CCGG	1 cut(s)	691
MspR9I	CCNGG	2 cut(s)	617, 692
Mva1269I	GAATGC	2 cut(s)	676, 907
MvaI	CCWGG	1 cut(s)	617
MvnI	CGCG	2 cut(s)	163, 282
MwoI	GCNNNNNNNGC	7 cut(s)	124, 271, 422, 470, 473, 871, 914
NarI	GGCGCC	1 cut(s)	425
NciI	CCSGG	1 cut(s)	692
NdeII	GATC	4 cut(s)	284, 637, 718, 1010
NlaIII	CATG	4 cut(s)	181, 223, 237, 787
NlaIV	GGNNCC	6 cut(s)	254, 286, 426, 505, 580, 720
NmuCI	GTSAC	1 cut(s)	391
NsiI	ATGCAT	1 cut(s)	179
NspI	RCATGY	1 cut(s)	181
PaeI	GCATGC	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	963
PctI	GAATGC	2 cut(s)	676, 907
PfeI	GAWTC	3 cut(s)	307, 372, 995
PflMI	CCANNNNNTGG	1 cut(s)	514
PfoI	TCCNGGA	1 cut(s)	615
PluTI	GGCGCC	1 cut(s)	428
PmaCI	CACGTG	1 cut(s)	209
PmlI	CACGTG	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	615
PspCI	CACGTG	1 cut(s)	209
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	6 cut(s)	254, 286, 426, 505, 580, 720
PspPI	GGNCC	5 cut(s)	239, 253, 503, 528, 747
PsuI	RGATCY	2 cut(s)	284, 718
RsaI	GTAC	1 cut(s)	635
RsaNI	GTAC	1 cut(s)	634
SacII	CCGCGG	1 cut(s)	283
Sau3AI	GATC	4 cut(s)	284, 637, 718, 1010
Sau96I	GGNCC	5 cut(s)	239, 253, 503, 528, 747
ScrFI	CCNGG	2 cut(s)	617, 692
SduI	GDGCHC	2 cut(s)	233, 581
SfcI	CTRYAG	1 cut(s)	979
SfoI	GGCGCC	1 cut(s)	426
Sfr303I	CCGCGG	1 cut(s)	283
SgrBI	CCGCGG	1 cut(s)	283
SinI	GGWCC	4 cut(s)	253, 503, 528, 747
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	1 cut(s)	821
SspDI	GGCGCC	1 cut(s)	424
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	4 cut(s)	98, 732, 791, 897
StyD4I	CCNGG	2 cut(s)	615, 690
TaaI	ACNGT	2 cut(s)	613, 751
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	4 cut(s)	540, 606, 957, 1024
TasI	AATT	1 cut(s)	821
TauI	GCSGC	4 cut(s)	425, 430, 467, 476
TfiI	GAWTC	3 cut(s)	307, 372, 995
TscAI	CASTG	1 cut(s)	813
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	8 cut(s)	319, 416, 419, 498, 569, 759, 905, 917
Tsp45I	GTSAC	1 cut(s)	391
TspRI	CASTG	1 cut(s)	813
Van91I	CCANNNNNTGG	1 cut(s)	514
VpaK11BI	GGWCC	4 cut(s)	253, 503, 528, 747
XceI	RCATGY	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	4 cut(s)	98, 732, 791, 897
Zsp2I	ATGCAT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.