pycom13g19800

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012496
Physical Location & Seq
Forward (+)
15731079 .. 15731914
836 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 486 bp
ATGTATTTGATCGTTGTCGGTTTTGCTAGTTGGTGTCTCAACAGGTTCATCAATGGCCAGACCAACCACCCAAGTTTTGGAGGAAATGGTGCGACAATGTTCTTTTTGATATTCTCCATGTTGGCTGGAGTGATGGGCATAGCGTCAAAGCTGGCCGGAGCAAACCACATCAGGTCTTGGAGGAGTGATAGCTTAGCTGCAGCAGGATCATCCGCCATCGTCGCGTGGGCTCTCACTGCACTGGCCTTTGGGTTGGCATGCAAGGAAATAAACATGGGAGGATACAGAGGATGGAGACTGAGGGTCTTGGAGGCTTTCGTAATAATCCTGATGTTCACTCAGCTCTTGTACCTCTTGATGCTTCATGCGGGCGTCTTCAGCAGCAAGTACGGCCCGGGCTACCGTGACACCGACTACCCAGTTACTGGCGGGGATCCGATACACAAGGGCACCACTGGAGGAGTCCCTGCTTCTAGGGTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

162

Amino Acids

17.27

Weight (kDa)

9.69

Isoelectric Point (pI)

27.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 1 - 124 1.2e-52 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04560
fragaria_vesca FvH4_4g05050 FvH4_4g05050
malus_domestica MD13G1224200.v1.1 MD16G1229000.v1.1
prunus_persica Prupe.1G050900_v2.0.a1 Prupe.1G050900_v2.0.a1
pyrus_communis pycom13g19800
rosa_chinensis RchiOBHm_Chr4g0395971
rosa_laevigata RLG00000009584
rosa_multiflora Rmu_sc0001103.1_g000004
rosa_roxburghii Rroxscaffold_5G00340730
rosa_rugosa Rorug03G0353100
rosa_samantha Rh4AG064300 Rh4AG066300 Rh4BG063000 Rh4CG069400 Rh4DG059500
rosa_wichuraiana Rw4G005190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 449
AccB7I CCANNNNNTGG 2 cut(s) 77, 425
AccII CGCG 1 cut(s) 224
AciI CCGC 3 cut(s) 213, 368, 429
AclWI GGATC 3 cut(s) 214, 428, 441
AcoI YGGCCR 2 cut(s) 55, 153
AcuI CTGAAG 1 cut(s) 361
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 2 cut(s) 350, 389
AfiI CCNNNNNNNGG 2 cut(s) 77, 425
AhdI GACNNNNNGTC 1 cut(s) 302
AluBI AGCT 4 cut(s) 151, 192, 197, 343
AluI AGCT 4 cut(s) 151, 192, 197, 343
Alw26I GTCTC 2 cut(s) 41, 289
AlwI GGATC 3 cut(s) 214, 428, 441
AlwNI CAGNNNCTG 1 cut(s) 425
Ama87I CYCGRG 1 cut(s) 394
AoxI GGCC 4 cut(s) 55, 153, 243, 391
ApeKI GCWGC 3 cut(s) 197, 200, 381
AspS9I GGNCC 1 cut(s) 392
AsuC2I CCSGG 2 cut(s) 395, 396
AvaI CYCGRG 1 cut(s) 394
BaeGI GKGCMC 1 cut(s) 452
BalI TGGCCA 1 cut(s) 57
BamHI GGATCC 1 cut(s) 433
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 367
BbvI GCAGC 3 cut(s) 184, 212, 393
BccI CCATC 3 cut(s) 127, 224, 285
BceAI ACGGC 1 cut(s) 406
BciVI GTATCC 1 cut(s) 275
BcnI CCSGG 2 cut(s) 395, 396
BcoDI GTCTC 2 cut(s) 41, 289
BfaI CTAG 2 cut(s) 27, 474
BfmI CTRYAG 1 cut(s) 198
BfuI GTATCC 1 cut(s) 275
BisI GCNGC 3 cut(s) 198, 201, 382
BlpI GCTNAGC 1 cut(s) 193
BlsI GCNGC 3 cut(s) 199, 202, 383
Bme1390I CCNGG 2 cut(s) 395, 396
BmeRI GACNNNNNGTC 1 cut(s) 302
BmeT110I CYCGRG 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 2 cut(s) 435, 451
BmrFI CCNGG 2 cut(s) 395, 396
BmrI ACTGGG 1 cut(s) 413
BmsI GCATC 1 cut(s) 348
BmuI ACTGGG 1 cut(s) 413
BpiI GAAGAC 1 cut(s) 367
BpmI CTGGAG 2 cut(s) 147, 477
Bpu1102I GCTNAGC 1 cut(s) 193
BpuMI CCSGG 2 cut(s) 395, 396
BsaHI GRCGYC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 394
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 425
Bse1I ACTGG 4 cut(s) 246, 419, 430, 460
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 2 cut(s) 209, 296
BseLI CCNNNNNNNGG 2 cut(s) 77, 425
BseMII CTCAG 2 cut(s) 290, 353
BseNI ACTGG 4 cut(s) 246, 419, 430, 460
BseRI GAGGAG 2 cut(s) 196, 474
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 3 cut(s) 184, 212, 393
BsgI GTGCAG 1 cut(s) 222
Bsh1236I CGCG 1 cut(s) 224
BshFI GGCC 4 cut(s) 57, 155, 245, 393
BshNI GGYRCC 1 cut(s) 449
BsiHKCI CYCGRG 1 cut(s) 394
BsiSI CCGG 2 cut(s) 156, 395
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 2 cut(s) 77, 425
BsmAI GTCTC 2 cut(s) 41, 289
BsmFI GGGAC 1 cut(s) 449
BsnI GGCC 4 cut(s) 57, 155, 245, 393
BsoBI CYCGRG 1 cut(s) 394
Bsp1286I GDGCHC 2 cut(s) 232, 452
Bsp143I GATC 3 cut(s) 9, 206, 433
Bsp1720I GCTNAGC 1 cut(s) 193
BspACI CCGC 3 cut(s) 213, 368, 429
BspANI GGCC 4 cut(s) 57, 155, 245, 393
BspCNI CTCAG 2 cut(s) 291, 352
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 2 cut(s) 435, 451
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 3 cut(s) 214, 428, 441
BspT107I GGYRCC 1 cut(s) 449
BsrI ACTGG 4 cut(s) 246, 419, 430, 460
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 3 cut(s) 9, 206, 433
BssNI GRCGYC 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 404
BstACI GRCGYC 1 cut(s) 372
BstC8I GCNNGC 3 cut(s) 153, 259, 370
BstDEI CTNAG 3 cut(s) 193, 299, 339
BstF5I GGATG 2 cut(s) 209, 296
BstFNI CGCG 1 cut(s) 224
BstKTI GATC 3 cut(s) 12, 209, 436
BstMAI GTCTC 2 cut(s) 41, 289
BstMBI GATC 3 cut(s) 9, 206, 433
BstMWI GCNNNNNNNGC 4 cut(s) 221, 236, 378, 390
BstNSI RCATGY 1 cut(s) 261
BstSCI CCNGG 2 cut(s) 393, 394
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 452
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 3 cut(s) 184, 212, 393
BstV2I GAAGAC 1 cut(s) 367
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BsuI GTATCC 1 cut(s) 275
BsuRI GGCC 4 cut(s) 57, 155, 245, 393
BtsCI GGATG 2 cut(s) 209, 296
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 3 cut(s) 234, 239, 453
Cac8I GCNNGC 3 cut(s) 153, 259, 370
CaiI CAGNNNCTG 1 cut(s) 425
Cfr13I GGNCC 1 cut(s) 392
Cfr9I CCCGGG 1 cut(s) 394
CseI GACGC 2 cut(s) 132, 361
Csp6I GTAC 2 cut(s) 349, 388
CviAII CATG 4 cut(s) 118, 258, 274, 365
CviQI GTAC 2 cut(s) 349, 388
DdeI CTNAG 3 cut(s) 193, 299, 339
DpnI GATC 3 cut(s) 11, 208, 435
DpnII GATC 3 cut(s) 9, 206, 433
DriI GACNNNNNGTC 1 cut(s) 302
EaeI YGGCCR 2 cut(s) 55, 153
Eam1105I GACNNNNNGTC 1 cut(s) 302
EciI GGCGGA 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 361
Eco88I CYCGRG 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 232
FaeI CATG 4 cut(s) 121, 261, 277, 368
FaiI YATR 5 cut(s) 119, 140, 259, 275, 366
FaqI GGGAC 1 cut(s) 449
FatI CATG 4 cut(s) 117, 257, 273, 364
FauI CCCGC 2 cut(s) 361, 422
Fnu4HI GCNGC 3 cut(s) 198, 201, 382
FokI GGATG 2 cut(s) 196, 303
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 3 cut(s) 198, 201, 382
FspBI CTAG 2 cut(s) 27, 474
GluI GCNGC 3 cut(s) 198, 201, 382
GsuI CTGGAG 2 cut(s) 147, 477
HaeIII GGCC 4 cut(s) 57, 155, 245, 393
HapII CCGG 2 cut(s) 156, 395
HgaI GACGC 2 cut(s) 132, 361
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 4 cut(s) 121, 261, 277, 368
HinfI GANTC 1 cut(s) 462
HpaII CCGG 2 cut(s) 156, 395
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 1 cut(s) 438
Hpy188III TCNNGA 2 cut(s) 328, 355
Hpy8I GTNNAC 1 cut(s) 336
Hpy99I CGWCG 1 cut(s) 224
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4V TGCA 3 cut(s) 200, 239, 261
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 236, 378, 390
HpyF3I CTNAG 3 cut(s) 193, 299, 339
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 4 cut(s) 121, 261, 277, 368
Kzo9I GATC 3 cut(s) 9, 206, 433
LmnI GCTCC 1 cut(s) 158
Lsp1109I GCAGC 3 cut(s) 184, 212, 393
LweI GCATC 1 cut(s) 348
MaeI CTAG 2 cut(s) 27, 474
MaeIII GTNAC 2 cut(s) 404, 421
MalI GATC 3 cut(s) 11, 208, 435
MboI GATC 3 cut(s) 9, 206, 433
MboII GAAGA 1 cut(s) 367
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 2 cut(s) 232, 452
MlsI TGGCCA 1 cut(s) 57
MluNI TGGCCA 1 cut(s) 57
MlyI GAGTC 1 cut(s) 471
MnlI CCTC 8 cut(s) 74, 174, 272, 281, 294, 304, 362, 452
Mox20I TGGCCA 1 cut(s) 57
MscI TGGCCA 1 cut(s) 57
MseI TTAA 1 cut(s) 484
Msp20I TGGCCA 1 cut(s) 57
MspI CCGG 2 cut(s) 156, 395
MspR9I CCNGG 2 cut(s) 395, 396
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 4 cut(s) 221, 236, 378, 390
NciI CCSGG 2 cut(s) 395, 396
NdeII GATC 3 cut(s) 9, 206, 433
NlaIII CATG 4 cut(s) 121, 261, 277, 368
NlaIV GGNNCC 2 cut(s) 435, 451
NmuCI GTSAC 1 cut(s) 404
NspI RCATGY 1 cut(s) 261
PaeI GCATGC 1 cut(s) 261
PflMI CCANNNNNTGG 2 cut(s) 77, 425
PkrI GCNGC 3 cut(s) 199, 202, 383
PleI GAGTC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 470
PspN4I GGNNCC 2 cut(s) 435, 451
PspPI GGNCC 1 cut(s) 392
PstI CTGCAG 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 425
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 2 cut(s) 350, 389
RsaNI GTAC 2 cut(s) 349, 388
SaqAI TTAA 1 cut(s) 484
SatI GCNGC 3 cut(s) 198, 201, 382
Sau3AI GATC 3 cut(s) 9, 206, 433
Sau96I GGNCC 1 cut(s) 392
SchI GAGTC 1 cut(s) 471
ScrFI CCNGG 2 cut(s) 395, 396
SduI GDGCHC 2 cut(s) 232, 452
SetI ASST 7 cut(s) 47, 153, 176, 194, 199, 345, 354
SfaNI GCATC 1 cut(s) 348
SfcI CTRYAG 1 cut(s) 198
SmaI CCCGGG 1 cut(s) 396
SphI GCATGC 1 cut(s) 261
SrfI GCCCGGGC 1 cut(s) 396
SsiI CCGC 3 cut(s) 213, 368, 429
SspMI CTAG 2 cut(s) 27, 474
StyD4I CCNGG 2 cut(s) 393, 394
TaaI ACNGT 1 cut(s) 404
Tru1I TTAA 1 cut(s) 484
Tru9I TTAA 1 cut(s) 484
TscAI CASTG 3 cut(s) 241, 246, 460
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 3 cut(s) 197, 200, 381
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 2 cut(s) 37, 353
TspMI CCCGGG 1 cut(s) 394
TspRI CASTG 3 cut(s) 241, 246, 460
Van91I CCANNNNNTGG 2 cut(s) 77, 425
XceI RCATGY 1 cut(s) 261
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
XmaI CCCGGG 1 cut(s) 394
XspI CTAG 2 cut(s) 27, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.