pycom13g20300

Phd finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0013146
Physical Location & Seq
Forward (+)
16330341 .. 16332587
2247 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 714 bp
ATGTCTTTCCTTGAAGAATTCAACGCCAATTTGGAATCTCTGCCTAATATTTTGGCTAAGAATTATTCGGTGATGCGCACTCTAGATCAAAGTTTACAAGATATCCAGAGACAAAATGAACAACGCTGCGAACAAGAAATTGAGGACATAAAGCGTGAAATTAAGTCTGGGAATATTACACCTGATACTTCCCTTATTAGATTCTCAGATGAGGCTCTTGATGAGCAGAAGCACAGTGTTGGGATTGCAGACGAAAAGGTTCTTTTGGCTGTACGGGCATATGATCTGGTGGATACACACATACAACAACTTGATCAGTACTTGAAAACTTTTGAGGAAGAGCTGCGTGAAAGAGATAGTGCTGCCGCAAGCGCCTTGCCTGCTCCAAATCCCGATAGTGGTGCAAAATCTGGAAAGAGTAGTGAAGGTGGTAGAGGAGGGCGTAAGAAAACAAGACTAGCAACAGCCGCGGCAGCAGCAGCAACTGCATCTGTCAATCCTACTGCTATGGATTTAGATATACCAGTGGATCCAAATGAACCCACGTACTGTTTATGCAACCAAGTTAGCTACGGGGAGATGGTTGCATGCGAGAACCCCAATTGCAAGATAGAGTGGTTCCATTTTGGGTGTGTTGGTCTGAAGGACAAACCAAGAGGAAAGTGGTATTGTACAGATTGTGCTGCATTGAAACCTCGCCGGAAAGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ING

Protein Analysis

238

Amino Acids

26.31

Weight (kDa)

5.28

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ING PF12998 3 - 111 3.2e-20 Inhibitor of growth proteins N-terminal histone-binding
PHD-1st_NSD PF23011 190 - 228 6.4e-07 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24010
fragaria_vesca FvH4_4g05430 FvH4_4g05430 FvH4_4g05430 FvH4_4g05430
malus_domestica MD13G1230600.v1.1 MD13G1230700.v1.1
prunus_persica Prupe.1G056400_v2.0.a1
pyrus_communis pycom13g20300
rosa_chinensis RchiOBHm_Chr4g0396581
rosa_laevigata RLG00000009519
rosa_roxburghii Rroxscaffold_5G00341430
rosa_rugosa Rorug03G0348800 Rorug03G0348900
rosa_samantha Rh4AG070500 Rh4BG068400 Rh4DG065500
rosa_wichuraiana Rw4G005620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 77
AccII CGCG 1 cut(s) 470
AciI CCGC 3 cut(s) 366, 468, 470
AclWI GGATC 2 cut(s) 524, 537
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 662
AfaI GTAC 4 cut(s) 273, 320, 548, 673
AfiI CCNNNNNNNGG 1 cut(s) 398
AgsI TTSAA 4 cut(s) 14, 22, 325, 691
AluBI AGCT 2 cut(s) 343, 570
AluI AGCT 2 cut(s) 343, 570
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 2 cut(s) 524, 537
AlwNI CAGNNNCTG 1 cut(s) 485
ApeKI GCWGC 7 cut(s) 126, 343, 362, 473, 476, 479, 683
ApoI RAATTY 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 258
AspLEI GCGC 2 cut(s) 78, 374
AsuHPI GGTGA 1 cut(s) 82
BamHI GGATCC 1 cut(s) 529
BbvI GCAGC 7 cut(s) 113, 330, 349, 485, 488, 491, 670
BccI CCATC 1 cut(s) 574
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciVI GTATCC 1 cut(s) 286
BclI TGATCA 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 2 cut(s) 83, 458
BfoI RGCGCY 1 cut(s) 375
BfuI GTATCC 1 cut(s) 286
BglI GCCNNNNNGGC 1 cut(s) 705
BmcAI AGTACT 1 cut(s) 320
BmiI GGNNCC 2 cut(s) 531, 620
BmsI GCATC 2 cut(s) 63, 497
BsaAI YACGTR 1 cut(s) 546
BsaJI CCNNGG 1 cut(s) 468
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse1I ACTGG 1 cut(s) 524
BseDI CCNNGG 1 cut(s) 468
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 524
BseRI GAGGAG 1 cut(s) 450
BseXI GCAGC 7 cut(s) 113, 330, 349, 485, 488, 491, 670
Bsh1236I CGCG 1 cut(s) 470
BsiSI CCGG 1 cut(s) 700
BslI CCNNNNNNNGG 1 cut(s) 398
BsmAI GTCTC 1 cut(s) 103
Bsp1407I TGTACA 1 cut(s) 671
Bsp143I GATC 4 cut(s) 85, 283, 313, 529
BspACI CCGC 3 cut(s) 366, 468, 470
BspCNI CTCAG 1 cut(s) 218
BspFNI CGCG 1 cut(s) 470
BspLI GGNNCC 2 cut(s) 531, 620
BspPI GGATC 2 cut(s) 524, 537
BspQI GCTCTTC 1 cut(s) 333
BsrGI TGTACA 1 cut(s) 671
BsrI ACTGG 1 cut(s) 524
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 4 cut(s) 85, 283, 313, 529
Bst4CI ACNGT 2 cut(s) 236, 551
Bst6I CTCTTC 1 cut(s) 333
BstAPI GCANNNNNTGC 1 cut(s) 485
BstAUI TGTACA 1 cut(s) 671
BstBAI YACGTR 1 cut(s) 546
BstC8I GCNNGC 3 cut(s) 370, 381, 589
BstDEI CTNAG 2 cut(s) 57, 205
BstDSI CCRYGG 1 cut(s) 468
BstFNI CGCG 1 cut(s) 470
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 2 cut(s) 78, 374
BstKTI GATC 4 cut(s) 88, 286, 316, 532
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 4 cut(s) 85, 283, 313, 529
BstMWI GCNNNNNNNGC 9 cut(s) 275, 371, 380, 467, 473, 476, 479, 485, 705
BstNSI RCATGY 1 cut(s) 591
BstUI CGCG 1 cut(s) 470
BstV1I GCAGC 7 cut(s) 113, 330, 349, 485, 488, 491, 670
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuI GTATCC 1 cut(s) 286
BtgI CCRYGG 1 cut(s) 468
BtsIMutI CAGTG 2 cut(s) 241, 531
Cac8I GCNNGC 3 cut(s) 370, 381, 589
CaiI CAGNNNCTG 1 cut(s) 485
CfoI GCGC 2 cut(s) 78, 374
Cfr42I CCGCGG 1 cut(s) 471
Csp6I GTAC 4 cut(s) 272, 319, 547, 672
CviAII CATG 1 cut(s) 588
CviJI RGCY 6 cut(s) 56, 215, 269, 343, 467, 570
CviKI_1 RGCY 6 cut(s) 56, 215, 269, 343, 467, 570
CviQI GTAC 4 cut(s) 272, 319, 547, 672
DdeI CTNAG 2 cut(s) 57, 205
DpnI GATC 4 cut(s) 87, 285, 315, 531
DpnII GATC 4 cut(s) 85, 283, 313, 529
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco32I GATATC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 662
EcoRI GAATTC 1 cut(s) 17
EcoRV GATATC 1 cut(s) 103
FaeI CATG 1 cut(s) 591
FaiI YATR 8 cut(s) 149, 280, 282, 302, 509, 521, 556, 589
FatI CATG 1 cut(s) 587
FauNDI CATATG 1 cut(s) 280
FbaI TGATCA 1 cut(s) 313
FspAI RTGCGCAY 1 cut(s) 77
FspBI CTAG 2 cut(s) 83, 458
FspI TGCGCA 1 cut(s) 77
GlaI GCGC 2 cut(s) 77, 373
HaeII RGCGCY 1 cut(s) 375
HapII CCGG 1 cut(s) 700
HhaI GCGC 2 cut(s) 78, 374
Hin1II CATG 1 cut(s) 591
Hin6I GCGC 2 cut(s) 76, 372
HinP1I GCGC 2 cut(s) 76, 372
HinfI GANTC 2 cut(s) 35, 201
HpaII CCGG 1 cut(s) 700
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 2 cut(s) 208, 642
Hpy188III TCNNGA 5 cut(s) 83, 106, 218, 392, 411
Hpy8I GTNNAC 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 419, 637
HpyCH4III ACNGT 2 cut(s) 236, 551
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 7 cut(s) 248, 404, 488, 558, 587, 606, 686
HpyF10VI GCNNNNNNNGC 9 cut(s) 275, 371, 380, 467, 473, 476, 479, 485, 705
HpyF3I CTNAG 2 cut(s) 57, 205
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 1 cut(s) 591
HspAI GCGC 2 cut(s) 76, 372
Ksp22I TGATCA 1 cut(s) 313
KspI CCGCGG 1 cut(s) 471
Kzo9I GATC 4 cut(s) 85, 283, 313, 529
LguI GCTCTTC 1 cut(s) 333
LmnI GCTCC 1 cut(s) 388
LpnPI CCDG 7 cut(s) 119, 153, 195, 272, 393, 396, 537
Lsp1109I GCAGC 7 cut(s) 113, 330, 349, 485, 488, 491, 670
LweI GCATC 2 cut(s) 63, 497
MaeI CTAG 2 cut(s) 83, 458
MaeII ACGT 1 cut(s) 545
MalI GATC 4 cut(s) 87, 285, 315, 531
MboI GATC 4 cut(s) 85, 283, 313, 529
MboII GAAGA 2 cut(s) 26, 350
MfeI CAATTG 1 cut(s) 601
MflI RGATCY 1 cut(s) 529
MluCI AATT 6 cut(s) 17, 28, 61, 138, 159, 601
MnlI CCTC 7 cut(s) 136, 205, 328, 428, 431, 650, 705
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 1 cut(s) 700
MunI CAATTG 1 cut(s) 601
MvnI CGCG 1 cut(s) 470
MwoI GCNNNNNNNGC 9 cut(s) 275, 371, 380, 467, 473, 476, 479, 485, 705
NdeI CATATG 1 cut(s) 280
NdeII GATC 4 cut(s) 85, 283, 313, 529
NlaIII CATG 1 cut(s) 591
NlaIV GGNNCC 2 cut(s) 531, 620
NsbI TGCGCA 1 cut(s) 77
NspI RCATGY 1 cut(s) 591
PaeI GCATGC 1 cut(s) 591
PciSI GCTCTTC 1 cut(s) 333
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 35, 201
Ppu21I YACGTR 1 cut(s) 546
PspN4I GGNNCC 2 cut(s) 531, 620
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 1 cut(s) 529
RsaI GTAC 4 cut(s) 273, 320, 548, 673
RsaNI GTAC 4 cut(s) 272, 319, 547, 672
SacII CCGCGG 1 cut(s) 471
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 1 cut(s) 162
Sau3AI GATC 4 cut(s) 85, 283, 313, 529
ScaI AGTACT 1 cut(s) 320
SetI ASST 7 cut(s) 184, 261, 345, 430, 548, 572, 697
SfaNI GCATC 2 cut(s) 63, 497
Sfr303I CCGCGG 1 cut(s) 471
SgrBI CCGCGG 1 cut(s) 471
SphI GCATGC 1 cut(s) 591
Sse9I AATT 6 cut(s) 17, 28, 61, 138, 159, 601
SsiI CCGC 3 cut(s) 366, 468, 470
SspI AATATT 2 cut(s) 49, 175
SspMI CTAG 2 cut(s) 83, 458
TaaI ACNGT 2 cut(s) 236, 551
TaiI ACGT 1 cut(s) 548
TasI AATT 6 cut(s) 17, 28, 61, 138, 159, 601
TatI WGTACW 2 cut(s) 318, 671
TauI GCSGC 3 cut(s) 368, 470, 473
TfiI GAWTC 2 cut(s) 35, 201
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 2 cut(s) 241, 531
TseI GCWGC 7 cut(s) 126, 343, 362, 473, 476, 479, 683
TspDTI ATGAA 2 cut(s) 132, 552
TspRI CASTG 2 cut(s) 241, 531
XapI RAATTY 1 cut(s) 17
XbaI TCTAGA 1 cut(s) 82
XceI RCATGY 1 cut(s) 591
XcmI CCANNNNNNNNNTGG 1 cut(s) 660
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 2 cut(s) 83, 458
ZrmI AGTACT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.