Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0012322

Physical Location & Seq

Genomic Coordinates Reverse (-)

19120647 .. 19122294

Gene Structure 1648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGATTCTCAAGTGCTTCGCGCCACTACAATGCTTCCATGTTCCCCACCATCCAACCGTTCGTTTAGTTCATCCCAACGTCACCTCTCCAACCCCATCCTCGTTAATCACAAATAGAAGGGGAGCATTATCCACTACTTTAATCTCCACCACATTATTCACGCTGACACCTCCTTCAAAGTCCGCCACCAGAACCGAATTCTCAGAGCTTCCAAACTCCGGCGGGGTCAAGGCTCTGGACCTTCGCCTTGGTGATGGTCAAGTACCCGCCGATGGCGACCAGGTTTCTGTTCATTACTATGGAAGATTGGCAGCAAAACAAGGATGGCGATTTGATTCGACATATGATCATAAAGATGAAAATGGTGAACCGATTCCTTTTGTGTTCGTGATTGGGTCCGGCAAAGTCATTTCGGGGATTGAAACAGCAGTTAAATCTATGAAAGTGGGTGGTGTTCGTCGGGTTGTTATACCGCCATCCCAAGGGTATCTGAGCACGTCACAAGAACCTATACCACCTAATTTTTTTGACAGACAGAGACTGTTTACTACCATTTTTAATCCTACTCGTCTTGCTAATGGAGAAGGATCAACATTGGGGACTCTCGTGTTCGATATTGAGTTAGTCAGCCTGAGGCATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

215

Amino Acids

23.38

Weight (kDa)

9.23

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	89 - 209	7.9e-21	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19830
fragaria_vesca	FvH4_4g09390 FvH4_4g09390
malus_domestica	MD00G1111500.v1.1
prunus_persica	Prupe.1G087100_v2.0.a1 Prupe.1G087100_v2.0.a1
pyrus_communis	pycom13g22030
rosa_chinensis	RchiOBHm_Chr4g0402661
rosa_multiflora	Rmu_sc0009850.1_g000005 Rmu_sc0013411.1_g000001
rosa_roxburghii	Rroxscaffold_5G00347410
rosa_rugosa	Rorug04G0037500 Rorug04G0037600
rosa_samantha	Rh4AG115100 Rh4BG107700 Rh4CG122000 Rh4DG107500
rosa_wichuraiana	Rw0G015110 Rw4G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	20
AciI	CCGC	4 cut(s)	183, 222, 267, 473
AclWI	GGATC	1 cut(s)	595
AcsI	RAATTY	1 cut(s)	197
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	3 cut(s)	218, 272, 482
AgsI	TTSAA	2 cut(s)	177, 422
AjiI	CACGTC	1 cut(s)	498
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw21I	GWGCWC	1 cut(s)	497
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	1 cut(s)	595
AlwNI	CAGNNNCTG	1 cut(s)	541
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	197
Asp700I	GAANNNNTTC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	2 cut(s)	238, 396
AsuHPI	GGTGA	3 cut(s)	73, 263, 377
AvaII	GGWCC	2 cut(s)	238, 396
AxyI	CCTNAGG	1 cut(s)	632
BauI	CACGAG	1 cut(s)	605
Bbv12I	GWGCWC	1 cut(s)	497
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	6 cut(s)	57, 103, 248, 266, 318, 484
BciT130I	CCWGG	1 cut(s)	281
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	532
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	2 cut(s)	238, 396
BmgBI	CACGTC	1 cut(s)	498
BmgT120I	GGNCC	2 cut(s)	238, 396
BmiI	GGNNCC	1 cut(s)	397
BmrFI	CCNGG	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	247, 481
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 272, 482
Bse21I	CCTNAGG	1 cut(s)	632
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	247, 481
BseGI	GGATG	5 cut(s)	49, 70, 95, 329, 476
BseLI	CCNNNNNNNGG	3 cut(s)	218, 272, 482
BseMII	CTCAG	3 cut(s)	216, 482, 623
BseXI	GCAGC	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	497
BsiSI	CCGG	2 cut(s)	219, 399
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	3 cut(s)	218, 272, 482
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	1 cut(s)	613
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp143I	GATC	2 cut(s)	346, 587
BspACI	CCGC	4 cut(s)	183, 222, 267, 473
BspCNI	CTCAG	3 cut(s)	215, 483, 624
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	397
BspPI	GGATC	1 cut(s)	595
BssECI	CCNNGG	2 cut(s)	247, 481
BssMI	GATC	2 cut(s)	346, 587
BssSI	CACGAG	1 cut(s)	605
BssT1I	CCWWGG	2 cut(s)	247, 481
Bst2BI	CACGAG	1 cut(s)	605
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	58, 543
BstDEI	CTNAG	3 cut(s)	202, 491, 632
BstF5I	GGATG	5 cut(s)	49, 70, 95, 329, 476
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	2 cut(s)	349, 590
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	2 cut(s)	346, 587
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	323
Bsu36I	CCTNAGG	1 cut(s)	632
BtrI	CACGTC	1 cut(s)	498
BtsCI	GGATG	5 cut(s)	49, 70, 95, 329, 476
CaiI	CAGNNNCTG	1 cut(s)	541
CfoI	GCGC	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	238, 396
CsiI	ACCWGGT	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	3 cut(s)	208, 233, 630
CviKI_1	RGCY	3 cut(s)	208, 233, 630
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	3 cut(s)	202, 491, 632
DpnI	GATC	2 cut(s)	348, 589
DpnII	GATC	2 cut(s)	346, 587
EciI	GGCGGA	1 cut(s)	172
Eco130I	CCWWGG	2 cut(s)	247, 481
Eco47I	GGWCC	2 cut(s)	238, 396
Eco81I	CCTNAGG	1 cut(s)	632
EcoRI	GAATTC	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	2 cut(s)	247, 481
ErhI	CCWWGG	2 cut(s)	247, 481
FaeI	CATG	1 cut(s)	41
FaiI	YATR	8 cut(s)	39, 300, 343, 345, 351, 440, 470, 512
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	1 cut(s)	37
FauI	CCCGC	2 cut(s)	215, 274
FauNDI	CATATG	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	5 cut(s)	36, 57, 82, 336, 463
Fsp4HI	GCNGC	1 cut(s)	312
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	312
HapII	CCGG	2 cut(s)	219, 399
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	1 cut(s)	41
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	4 cut(s)	4, 335, 373, 601
HpaII	CCGG	2 cut(s)	219, 399
HphI	GGTGA	3 cut(s)	73, 263, 377
Hpy166II	GTNNAC	2 cut(s)	368, 546
Hpy188I	TCNGA	2 cut(s)	205, 492
Hpy188III	TCNNGA	2 cut(s)	236, 388
Hpy8I	GTNNAC	2 cut(s)	368, 546
Hpy99I	CGWCG	1 cut(s)	462
HpyAV	CCTTC	4 cut(s)	111, 183, 251, 578
HpyCH4III	ACNGT	2 cut(s)	58, 543
HpyCH4IV	ACGT	2 cut(s)	78, 497
HpyF3I	CTNAG	3 cut(s)	202, 491, 632
HpySE526I	ACGT	2 cut(s)	78, 497
Hsp92II	CATG	1 cut(s)	41
HspAI	GCGC	1 cut(s)	20
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	346, 587
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	6 cut(s)	202, 221, 232, 266, 293, 412
Lsp1109I	GCAGC	1 cut(s)	323
MabI	ACCWGGT	1 cut(s)	279
MaeII	ACGT	2 cut(s)	78, 497
MaeIII	GTNAC	2 cut(s)	79, 498
MalI	GATC	2 cut(s)	348, 589
MboI	GATC	2 cut(s)	346, 587
MboII	GAAGA	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	497
MluCI	AATT	2 cut(s)	197, 520
MlyI	GAGTC	1 cut(s)	595
MmeI	TCCRAC	2 cut(s)	77, 113
MnlI	CCTC	4 cut(s)	94, 109, 180, 627
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	4 cut(s)	104, 140, 432, 558
MslI	CAYNNNNRTG	3 cut(s)	28, 297, 354
MspI	CCGG	2 cut(s)	219, 399
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	20
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	2 cut(s)	346, 587
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	1 cut(s)	397
NmuCI	GTSAC	2 cut(s)	79, 498
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	4, 335, 373
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	397
PspPI	GGNCC	2 cut(s)	238, 396
PstNI	CAGNNNCTG	1 cut(s)	541
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
RseI	CAYNNNNRTG	3 cut(s)	28, 297, 354
SaqAI	TTAA	4 cut(s)	104, 140, 432, 558
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	2 cut(s)	346, 587
Sau96I	GGNCC	2 cut(s)	238, 396
SchI	GAGTC	1 cut(s)	595
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	497
SetI	ASST	9 cut(s)	81, 86, 172, 210, 243, 285, 500, 511, 520
SexAI	ACCWGGT	1 cut(s)	279
SinI	GGWCC	2 cut(s)	238, 396
SmiMI	CAYNNNNRTG	3 cut(s)	28, 297, 354
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	2 cut(s)	197, 520
SsiI	CCGC	4 cut(s)	183, 222, 267, 473
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	2 cut(s)	247, 481
TaaI	ACNGT	2 cut(s)	58, 543
TaiI	ACGT	2 cut(s)	81, 500
TaqI	TCGA	2 cut(s)	338, 612
TasI	AATT	2 cut(s)	197, 520
TfiI	GAWTC	3 cut(s)	4, 335, 373
Tru1I	TTAA	4 cut(s)	104, 140, 432, 558
Tru9I	TTAA	4 cut(s)	104, 140, 432, 558
TseFI	GTSAC	2 cut(s)	79, 498
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	2 cut(s)	79, 498
TspDTI	ATGAA	4 cut(s)	59, 281, 372, 455
VpaK11BI	GGWCC	2 cut(s)	238, 396
XapI	RAATTY	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.