Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0015375

Physical Location & Seq

Genomic Coordinates Reverse (-)

974736 .. 977309

Gene Structure 2574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTTGCCTGTGAAAACTGCCCAGAAAGGAAAGGCCACAAGAGAGCCAGAGGGTTCGCAGCCAACCTTGTTGCAAGTGAGAACTCCCAAGAGTGGAAGGGCCAGAAGAGAGCTAGAGAAACGTGCCCCAAAGATCGTTGAGACGGGGAAGAAGACGTTGATTCTTCACGGTAGGAAGACGAGCAGTGTGATTAATTCTGCGTTATCGGACCTTTACCATTTGAAGAAGGACAGTGCTGTGAAATTCAGCCGCAGGAATGAGGATATTAGCCCTTTTGAAAGTGGGGGTGATACTTCCCTTGAGTTCTTCTCTCACAAAACCGATTGCAGCATTTTCGTCTTTGGCTCTCACTCAAAGAAGCGGCCTGACAATCTTGTCATAGGGAGAACTTATGATCACCATGTATATGATCTTGTAGAGGTTGGTGTTGAAAACTACAAACCATTGGAATCGTTTACATATGACAAGAAACTAGCACCACGGGTGGGGACGAAACCTTTCATTTGCTTTATTGGAGAAGGATTTGAAAGCGCAGGAGAGCTGCAACATTTGAAGGAAGTTTTGCTTGATCTGTTGCGAGGAGAGGTTGTAGAGAAATTAAATCTTGCCGGTTTAGATCGATCCTGCCATGTATATGTATGTACAGCTATATCTTCTAAAAAAGTGGTTCTTACTCAATGTGCACTGCGACTTAAAAAATCTGGCACAGTAGTTCCACGGATGGAGCTAGTTGAAGTTGGCCCCTCCATGGATTTAGTAGTTCGTCGGCATCGCCTTCCTAATGAAAGCCTAAGGAAAGAAGCAATGAGAGAAGGCAAAAATCAGCCTAAGAAGGACAAGAATATTAAACAGGACCTACTGCGGGGCAAGGTTGGGAAAATCAACATCCCAGATCAAAAGATTGGAGATACGGTGTATTATCACACAAAGGTTGGTGATACATTTGTGCCTAGCAAAACGAAGGGAGTTAAAAGGGAGCGACGCGAAGCTAGAATGAAACACGAGGGTAATGAGCGTACACCAAAGGTTCAACACATGCTAGAGCCCAAGAAAGCAAAAAAACTTAAAAGGGAGCGCCATGATCCTACAACAACCAATTATGCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

370

Amino Acids

41.86

Weight (kDa)

9.82

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Brix	PF04427	57 - 256	1.7e-36	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23620
fragaria_vesca	FvH4_6g17900
malus_domestica	MD12G1018000.v1.1 MD14G1016000.v1.1
prunus_persica	Prupe.7G117100_v2.0.a1
pyrus_communis	pycom12g01500 pycom14g01380
rosa_chinensis	RchiOBHm_Chr3g0472151
rosa_laevigata	RLG00000012848 RLG00000024101
rosa_multiflora	Rmu_sc0002532.1_g000027
rosa_roxburghii	Rroxscaffold_6G00409200
rosa_rugosa	Rorug03G0122700
rosa_samantha	Rh3AG174500 Rh3CG191000
rosa_wichuraiana	Rw3G016640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
AccII	CGCG	1 cut(s)	984
AciI	CCGC	3 cut(s)	250, 361, 862
AclWI	GGATC	2 cut(s)	615, 1076
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	2 cut(s)	643, 1018
AfiI	CCNNNNNNNGG	4 cut(s)	92, 485, 748, 862
AgsI	TTSAA	7 cut(s)	223, 278, 431, 527, 553, 734, 1031
AluBI	AGCT	5 cut(s)	112, 541, 647, 727, 989
AluI	AGCT	5 cut(s)	112, 541, 647, 727, 989
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	1 cut(s)	134
Alw44I	GTGCAC	1 cut(s)	681
AlwI	GGATC	2 cut(s)	615, 1076
AoxI	GGCC	4 cut(s)	33, 99, 362, 739
ApaLI	GTGCAC	1 cut(s)	681
ApeKI	GCWGC	3 cut(s)	58, 327, 541
ApoI	RAATTY	1 cut(s)	242
AseI	ATTAAT	1 cut(s)	192
Asp700I	GAANNNNTTC	1 cut(s)	497
AspLEI	GCGC	2 cut(s)	533, 1077
AspS9I	GGNCC	4 cut(s)	99, 208, 740, 853
AsuHPI	GGTGA	3 cut(s)	299, 389, 947
AvaII	GGWCC	2 cut(s)	208, 853
AxyI	CCTNAGG	1 cut(s)	791
BaeGI	GKGCMC	2 cut(s)	127, 685
BaeI	ACNNNNGTAYC	2 cut(s)	930, 963
BanII	GRGCYC	1 cut(s)	1047
BauI	CACGAG	1 cut(s)	1001
BbsI	GAAGAC	2 cut(s)	158, 182
Bbv12I	GWGCWC	1 cut(s)	685
BbvI	GCAGC	3 cut(s)	70, 339, 528
BccI	CCATC	1 cut(s)	715
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	6 cut(s)	113, 473, 728, 951, 990, 1040
BfoI	RGCGCY	1 cut(s)	1078
BisI	GCNGC	5 cut(s)	59, 250, 328, 362, 542
BlsI	GCNGC	5 cut(s)	60, 251, 329, 363, 543
Bme18I	GGWCC	2 cut(s)	208, 853
BmgT120I	GGNCC	4 cut(s)	99, 208, 740, 853
BmiI	GGNNCC	1 cut(s)	742
BmsI	GCATC	1 cut(s)	778
BpiI	GAAGAC	2 cut(s)	158, 182
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
BpuEI	CTTGAG	1 cut(s)	320
Bsa29I	ATCGAT	1 cut(s)	619
BsaJI	CCNNGG	3 cut(s)	479, 716, 747
BsaXI	ACNNNNNCTCC	4 cut(s)	573, 603, 897, 927
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 485, 748, 862
Bse118I	RCCGGY	1 cut(s)	608
Bse21I	CCTNAGG	1 cut(s)	791
Bse3DI	GCAATG	1 cut(s)	810
BseCI	ATCGAT	1 cut(s)	619
BseDI	CCNNGG	3 cut(s)	479, 716, 747
BseGI	GGATG	2 cut(s)	726, 885
BseLI	CCNNNNNNNGG	4 cut(s)	92, 485, 748, 862
BseMI	GCAATG	1 cut(s)	810
BseRI	GAGGAG	1 cut(s)	594
BseSI	GKGCMC	2 cut(s)	127, 685
BseXI	GCAGC	3 cut(s)	70, 339, 528
Bsh1236I	CGCG	1 cut(s)	984
BshFI	GGCC	4 cut(s)	35, 101, 364, 741
BshVI	ATCGAT	1 cut(s)	619
BsiHKAI	GWGCWC	1 cut(s)	685
BsiSI	CCGG	1 cut(s)	609
BslFI	GGGAC	1 cut(s)	502
BslI	CCNNNNNNNGG	4 cut(s)	92, 485, 748, 862
BsmAI	GTCTC	1 cut(s)	134
BsmBI	CGTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	502
BsnI	GGCC	4 cut(s)	35, 101, 364, 741
Bsp1286I	GDGCHC	3 cut(s)	127, 685, 1047
Bsp1407I	TGTACA	1 cut(s)	641
Bsp143I	GATC	8 cut(s)	132, 394, 409, 568, 616, 620, 892, 1081
Bsp19I	CCATGG	1 cut(s)	747
BspACI	CCGC	3 cut(s)	250, 361, 862
BspANI	GGCC	4 cut(s)	35, 101, 364, 741
BspDI	ATCGAT	1 cut(s)	619
BspFNI	CGCG	1 cut(s)	984
BspLI	GGNNCC	1 cut(s)	742
BspPI	GGATC	2 cut(s)	615, 1076
BsrDI	GCAATG	1 cut(s)	810
BsrFI	RCCGGY	1 cut(s)	608
BsrGI	TGTACA	1 cut(s)	641
BssAI	RCCGGY	1 cut(s)	608
BssECI	CCNNGG	3 cut(s)	479, 716, 747
BssMI	GATC	8 cut(s)	132, 394, 409, 568, 616, 620, 892, 1081
BssSI	CACGAG	1 cut(s)	1001
BssT1I	CCWWGG	1 cut(s)	747
Bst2BI	CACGAG	1 cut(s)	1001
Bst4CI	ACNGT	4 cut(s)	170, 233, 709, 913
Bst6I	CTCTTC	1 cut(s)	100
BstAUI	TGTACA	1 cut(s)	641
BstDEI	CTNAG	2 cut(s)	791, 828
BstDSI	CCRYGG	3 cut(s)	479, 716, 747
BstF5I	GGATG	2 cut(s)	726, 885
BstFNI	CGCG	1 cut(s)	984
BstH2I	RGCGCY	1 cut(s)	1078
BstHHI	GCGC	2 cut(s)	533, 1077
BstKTI	GATC	8 cut(s)	135, 397, 412, 571, 619, 623, 895, 1084
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	8 cut(s)	132, 394, 409, 568, 616, 620, 892, 1081
BstNSI	RCATGY	1 cut(s)	1039
BstSLI	GKGCMC	2 cut(s)	127, 685
BstUI	CGCG	1 cut(s)	984
BstV1I	GCAGC	3 cut(s)	70, 339, 528
BstV2I	GAAGAC	2 cut(s)	158, 182
Bsu15I	ATCGAT	1 cut(s)	619
Bsu36I	CCTNAGG	1 cut(s)	791
BsuRI	GGCC	4 cut(s)	35, 101, 364, 741
BsuTUI	ATCGAT	1 cut(s)	619
BtgI	CCRYGG	3 cut(s)	479, 716, 747
BtgZI	GCGATG	1 cut(s)	755
BtsCI	GGATG	2 cut(s)	726, 885
BtsI	GCAGTG	2 cut(s)	190, 683
BtsIMutI	CAGTG	3 cut(s)	190, 238, 683
CfoI	GCGC	2 cut(s)	533, 1077
Cfr10I	RCCGGY	1 cut(s)	608
Cfr13I	GGNCC	4 cut(s)	99, 208, 740, 853
ClaI	ATCGAT	1 cut(s)	619
CseI	GACGC	1 cut(s)	990
Csp6I	GTAC	2 cut(s)	642, 1017
CviAII	CATG	5 cut(s)	401, 629, 748, 1036, 1079
CviQI	GTAC	2 cut(s)	642, 1017
DdeI	CTNAG	2 cut(s)	791, 828
DpnI	GATC	8 cut(s)	134, 396, 411, 570, 618, 622, 894, 1083
DpnII	GATC	8 cut(s)	132, 394, 409, 568, 616, 620, 892, 1081
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	747
Eco24I	GRGCYC	1 cut(s)	1047
Eco47I	GGWCC	2 cut(s)	208, 853
Eco81I	CCTNAGG	1 cut(s)	791
EcoO109I	RGGNCCY	1 cut(s)	853
EcoT14I	CCWWGG	1 cut(s)	747
EcoT38I	GRGCYC	1 cut(s)	1047
ErhI	CCWWGG	1 cut(s)	747
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	5 cut(s)	404, 632, 751, 1039, 1082
FalI	AAGNNNNNCTT	4 cut(s)	549, 581, 654, 686
FaqI	GGGAC	1 cut(s)	502
FatI	CATG	5 cut(s)	400, 628, 747, 1035, 1078
FauI	CCCGC	1 cut(s)	855
FauNDI	CATATG	1 cut(s)	460
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	5 cut(s)	59, 250, 328, 362, 542
FokI	GGATG	2 cut(s)	733, 872
FriOI	GRGCYC	1 cut(s)	1047
Fsp4HI	GCNGC	5 cut(s)	59, 250, 328, 362, 542
FspBI	CTAG	6 cut(s)	113, 473, 728, 951, 990, 1040
GlaI	GCGC	2 cut(s)	532, 1076
GluI	GCNGC	5 cut(s)	59, 250, 328, 362, 542
HaeII	RGCGCY	1 cut(s)	1078
HaeIII	GGCC	4 cut(s)	35, 101, 364, 741
HapII	CCGG	1 cut(s)	609
HgaI	GACGC	1 cut(s)	990
HhaI	GCGC	2 cut(s)	533, 1077
Hin1II	CATG	5 cut(s)	404, 632, 751, 1039, 1082
Hin6I	GCGC	2 cut(s)	531, 1075
HinP1I	GCGC	2 cut(s)	531, 1075
HinfI	GANTC	2 cut(s)	160, 449
HpaII	CCGG	1 cut(s)	609
HphI	GGTGA	3 cut(s)	299, 389, 947
Hpy166II	GTNNAC	3 cut(s)	456, 683, 1019
Hpy188I	TCNGA	1 cut(s)	208
Hpy8I	GTNNAC	3 cut(s)	456, 683, 1019
Hpy99I	CGWCG	2 cut(s)	768, 984
HpyAV	CCTTC	8 cut(s)	90, 220, 512, 547, 785, 806, 826, 955
HpyCH4III	ACNGT	4 cut(s)	170, 233, 709, 913
HpyCH4IV	ACGT	2 cut(s)	121, 155
HpyCH4V	TGCA	4 cut(s)	73, 327, 544, 683
HpyF3I	CTNAG	2 cut(s)	791, 828
HpySE526I	ACGT	2 cut(s)	121, 155
Hsp92II	CATG	5 cut(s)	404, 632, 751, 1039, 1082
HspAI	GCGC	2 cut(s)	531, 1075
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	8 cut(s)	132, 394, 409, 568, 616, 620, 892, 1081
LmnI	GCTCC	3 cut(s)	724, 976, 1072
Lsp1109I	GCAGC	3 cut(s)	70, 339, 528
LweI	GCATC	1 cut(s)	778
MaeI	CTAG	6 cut(s)	113, 473, 728, 951, 990, 1040
MaeII	ACGT	2 cut(s)	121, 155
MalI	GATC	8 cut(s)	134, 396, 411, 570, 618, 622, 894, 1083
MboI	GATC	8 cut(s)	132, 394, 409, 568, 616, 620, 892, 1081
MboII	GAAGA	8 cut(s)	117, 155, 160, 163, 187, 235, 298, 645
MhlI	GDGCHC	3 cut(s)	127, 685, 1047
MluCI	AATT	4 cut(s)	193, 242, 596, 1096
MnlI	CCTC	7 cut(s)	43, 253, 412, 572, 577, 754, 997
MroXI	GAANNNNTTC	1 cut(s)	497
MseI	TTAA	6 cut(s)	192, 599, 693, 846, 969, 1065
MslI	CAYNNNNRTG	2 cut(s)	405, 633
MspI	CCGG	1 cut(s)	609
MvnI	CGCG	1 cut(s)	984
NcoI	CCATGG	1 cut(s)	747
NdeI	CATATG	1 cut(s)	460
NdeII	GATC	8 cut(s)	132, 394, 409, 568, 616, 620, 892, 1081
NlaIII	CATG	5 cut(s)	404, 632, 751, 1039, 1082
NlaIV	GGNNCC	1 cut(s)	742
NspI	RCATGY	1 cut(s)	1039
PdmI	GAANNNNTTC	1 cut(s)	497
PfeI	GAWTC	2 cut(s)	160, 449
PkrI	GCNGC	5 cut(s)	60, 251, 329, 363, 543
PpuMI	RGGWCCY	1 cut(s)	853
PshBI	ATTAAT	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	853
PspN4I	GGNNCC	1 cut(s)	742
PspPI	GGNCC	4 cut(s)	99, 208, 740, 853
PspPPI	RGGWCCY	1 cut(s)	853
RsaI	GTAC	2 cut(s)	643, 1018
RsaNI	GTAC	2 cut(s)	642, 1017
RseI	CAYNNNNRTG	2 cut(s)	405, 633
SaqAI	TTAA	6 cut(s)	192, 599, 693, 846, 969, 1065
SatI	GCNGC	5 cut(s)	59, 250, 328, 362, 542
Sau3AI	GATC	8 cut(s)	132, 394, 409, 568, 616, 620, 892, 1081
Sau96I	GGNCC	4 cut(s)	99, 208, 740, 853
SduI	GDGCHC	3 cut(s)	127, 685, 1047
SfaNI	GCATC	1 cut(s)	778
SinI	GGWCC	2 cut(s)	208, 853
SmiMI	CAYNNNNRTG	2 cut(s)	405, 633
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	4 cut(s)	193, 242, 596, 1096
SsiI	CCGC	3 cut(s)	250, 361, 862
SspI	AATATT	1 cut(s)	844
SspMI	CTAG	6 cut(s)	113, 473, 728, 951, 990, 1040
StyI	CCWWGG	1 cut(s)	747
TaaI	ACNGT	4 cut(s)	170, 233, 709, 913
TaiI	ACGT	2 cut(s)	124, 158
TaqI	TCGA	1 cut(s)	619
TasI	AATT	4 cut(s)	193, 242, 596, 1096
TatI	WGTACW	1 cut(s)	641
TauI	GCSGC	2 cut(s)	252, 364
TfiI	GAWTC	2 cut(s)	160, 449
Tru1I	TTAA	6 cut(s)	192, 599, 693, 846, 969, 1065
Tru9I	TTAA	6 cut(s)	192, 599, 693, 846, 969, 1065
TscAI	CASTG	3 cut(s)	190, 238, 690
TseI	GCWGC	3 cut(s)	58, 327, 541
TspDTI	ATGAA	3 cut(s)	490, 798, 1010
TspGWI	ACGGA	1 cut(s)	733
TspRI	CASTG	3 cut(s)	190, 238, 690
VneI	GTGCAC	1 cut(s)	681
VpaK11BI	GGWCC	2 cut(s)	208, 853
VspI	ATTAAT	1 cut(s)	192
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	1 cut(s)	1039
XmnI	GAANNNNTTC	1 cut(s)	497
XspI	CTAG	6 cut(s)	113, 473, 728, 951, 990, 1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.